Bruno Victal <mirai@HIDDEN>
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From: Vinicius Monego <monego@HIDDEN>
To: 49207 <at> debbugs.gnu.org
Subject: [PATCH 6/6] gnu: Add python-iris.
Date: Fri, 23 Jul 2021 23:25:29 +0000
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* gnu/packages/geo.scm (python-iris): New variable.
---
gnu/packages/geo.scm | 67 ++++++++++++++++++++++++++++++++++++++++++++
1 file changed, 67 insertions(+)
diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index 314165062c..36c020e31d 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -92,6 +92,7 @@
#:use-module (gnu packages protobuf)
#:use-module (gnu packages pulseaudio)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-check)
#:use-module (gnu packages python-science)
#:use-module (gnu packages python-web)
@@ -945,6 +946,72 @@ Shapely capabilities
Climate and Forecast (CF) metadata conventions.")
(license license:lgpl3)))
+(define-public python-iris
+ (package
+ (name "python-iris")
+ (version "3.0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "scitools-iris" version))
+ (sha256
+ (base32 "1zqicscnnfqpck960xdjng38qk0w0spmcysl89l3smagdsagzxkr"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-before 'check 'pre-check
+ (lambda _
+ ;; Some tests require a writable home.
+ (setenv "HOME" "/tmp")
+ ;; Iris will check for "scitools-iris[test]" before running the
+ ;; tests. The complete test set weighs 150MB. Skip this check.
+ (substitute* "setup.py"
+ ((".*tests_require.*") ""))
+ ;; The tests below open external connections.
+ (substitute*
+ "lib/iris/tests/integration/plot/test_vector_plots.py"
+ (("test_2d_plain_latlon") "_test_2d_plain_latlon")
+ (("test_2d_plain_latlon_on_polar_map")
+ "_test_2d_plain_latlon_on_polar_map")
+ (("test_2d_rotated_latlon") "_test_2d_rotated_latlon"))
+ (substitute*
+ "lib/iris/tests/integration/plot/test_plot_2d_coords.py"
+ (("test_2d_coords_contour") "_test_2d_coords_contour"))
+ ;; This one fails with AssertionError.
+ (substitute* "lib/iris/tests/experimental/test_animate.py"
+ (("test_cube_animation") "_test_cube_animation"))
+ ;; Compile Pyke rules before running the tests.
+ (invoke "python" "setup.py" "pyke_rules"))))))
+ (propagated-inputs
+ `(("python-cartopy" ,python-cartopy)
+ ("python-cf-units" ,python-cf-units)
+ ("python-cftime" ,python-cftime)
+ ("python-dask" ,python-dask)
+ ("python-matplotlib" ,python-matplotlib)
+ ("python-netcdf4" ,python-netcdf4)
+ ("python-numpy" ,python-numpy)
+ ("python-scipy" ,python-scipy)
+ ("python-xxhash" ,python-xxhash)))
+ (native-inputs
+ `(("netcdf" ,netcdf)
+ ("python-black" ,python-black)
+ ("python-filelock" ,python-filelock)
+ ("python-imagehash" ,python-imagehash)
+ ("python-nose" ,python-nose)
+ ("python-pillow" ,python-pillow)
+ ("python-pyke" ,python-pyke)
+ ("python-requests" ,python-requests)
+ ("python-wheel" ,python-wheel)))
+ (home-page "https://github.com/SciTools/iris")
+ (synopsis "Library for analysing and visualising Earth science data")
+ (description "Iris is a Python library for analysing and visualising Earth
+science data. It excels when working with multi-dimensional Earth Science
+data, where tabular representations become unwieldy and inefficient. Iris
+implements a data model based on the CF conventions.")
+ ;; See iris/docs/src/copyright.rst.
+ (license license:lgpl3+)))
+
(define-public postgis
(package
(name "postgis")
--
2.30.2
guix-patches@HIDDEN:bug#49207; Package guix-patches.
Full text available.
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From: Vinicius Monego <monego@HIDDEN>
To: 49207 <at> debbugs.gnu.org
Subject: [PATCH 5/6] gnu: Add python-pyke.
Date: Fri, 23 Jul 2021 23:25:28 +0000
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* gnu/packages/python-xyz.scm (python-pyke): New variable.
---
gnu/packages/python-xyz.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 61b1b7d29c..360650332e 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -6009,6 +6009,39 @@ operators such as union, intersection, and difference.")
search in Python.")
(license license:lgpl3+)))
+(define-public python-pyke
+ (package
+ (name "python-pyke")
+ (version "1.1.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "scitools-pyke" version))
+ (sha256
+ (base32 "0q7nxd0gw135922ck155w2nj2vf47k7cgzdqipxlyrgq6q3lkinl"))))
+ (build-system python-build-system)
+ ;; FIXME: two tests are failing with:
+ ;; "AttributeError: 'fc_tests' object has no attribute 'engine'.".
+ (arguments
+ `(#:tests? #f))
+ (home-page "https://sourceforge.net/projects/pyke/")
+ (synopsis "Python Knowledge Engine")
+ (description "Pyke is a Python Knowledge Engine and automatic Python
+program generator. Both forward-chaining and backward-chaining rules (which
+may include Python code) are compiled into Python. It can also automatically
+assemble Python programs out of Python functions which are attached to
+backward-chaining rules.
+
+Features:
+
+@itemize
+@item Automatic programming: generates Python programs.
+@item Forward and backward chaining.
+@item Multiple knowledge engines and rule bases.
+@item Rule-based inheritance.
+@end itemize")
+ (license license:expat)))
+
(define-public python-wurlitzer
(package
(name "python-wurlitzer")
--
2.30.2
guix-patches@HIDDEN:bug#49207; Package guix-patches.
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From: Vinicius Monego <monego@HIDDEN>
To: 49207 <at> debbugs.gnu.org
Subject: [PATCH 4/6] gnu: Add python-cf-units.
Date: Fri, 23 Jul 2021 23:25:27 +0000
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* gnu/packages/geo.scm (python-cf-units): New variable.
---
gnu/packages/geo.scm | 47 ++++++++++++++++++++++++++++++++++++++++++++
1 file changed, 47 insertions(+)
diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index 37be78edbf..314165062c 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -58,6 +58,7 @@
#:use-module (gnu packages bash)
#:use-module (gnu packages bison)
#:use-module (gnu packages boost)
+ #:use-module (gnu packages c)
#:use-module (gnu packages check)
#:use-module (gnu packages compression)
#:use-module (gnu packages curl)
@@ -898,6 +899,52 @@ Shapely capabilities
@end itemize")
(license license:lgpl3+)))
+(define-public python-cf-units
+ (package
+ (name "python-cf-units")
+ (version "2.1.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "cf-units" version))
+ (sha256
+ (base32 "0cswphn1cw0qyzglcn4xinr3pfhvbsdyll4hnb702fsfxv9q2cyl"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'disable-doctest
+ (lambda _
+ ;; Two doctests fail.
+ (substitute* "setup.cfg" (("--doctest-modules") ""))))
+ (replace 'check
+ (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "pytest" "--pyargs" "cf_units" "-ra"
+ ;; This test failed.
+ "-k" "not test_masked_ndarray")))))))
+ (native-inputs
+ `(("python-coveralls" ,python-coveralls)
+ ("python-cython" ,python-cython)
+ ("python-jinja2" ,python-jinja2)
+ ("python-pep8" ,python-pep8)
+ ("python-pytest" ,python-pytest)
+ ("python-pytest-cov" ,python-pytest-cov)
+ ("python-pytest-runner" ,python-pytest-runner)))
+ (inputs
+ `(("udunits" ,udunits)))
+ (propagated-inputs
+ `(("python-antlr4" ,python-antlr4)
+ ("python-cftime" ,python-cftime)
+ ("python-numpy" ,python-numpy)
+ ("python-six" ,python-six)))
+ (home-page "https://github.com/SciTools/cf-units")
+ (synopsis "Units of measure as required by the CF metadata conventions")
+ (description "This package provides units of measure as required by the
+Climate and Forecast (CF) metadata conventions.")
+ (license license:lgpl3)))
+
(define-public postgis
(package
(name "postgis")
--
2.30.2
guix-patches@HIDDEN:bug#49207; Package guix-patches.
Full text available.
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To: 49207 <at> debbugs.gnu.org
Subject: [PATCH 3/6] gnu: Add python-antlr4.
Date: Fri, 23 Jul 2021 23:25:26 +0000
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* gnu/packages/python-xyz.scm (python-antlr4): New variable.
---
gnu/packages/python-xyz.scm | 19 +++++++++++++++++++
1 file changed, 19 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 2b4ce0cba3..61b1b7d29c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -13062,6 +13062,25 @@ fast xml and html manipulation.")
xxHash non-cryptographic hash algorithm.")
(license license:bsd-2)))
+(define-public python-antlr4
+ (package
+ (name "python-antlr4")
+ (version "4.7.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "antlr4-python3-runtime" version))
+ (sha256
+ (base32 "02xm7ccsf51vh4xsnhlg6pvchm1x3ckgv9kwm222w5drizndr30n"))))
+ (arguments
+ `(#:tests? #f)) ; there are no tests
+ (build-system python-build-system)
+ (home-page "https://www.antlr.org")
+ (synopsis "ANTLR runtime for Python")
+ (description
+ "This package provides a ANTLR runtime for Python.")
+ (license license:bsd-3)))
+
(define-public python-anyjson
(package
(name "python-anyjson")
--
2.30.2
guix-patches@HIDDEN:bug#49207; Package guix-patches.
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From: Vinicius Monego <monego@HIDDEN>
To: 49207 <at> debbugs.gnu.org
Subject: [PATCH 2/6] gnu: Add python-xxhash.
Date: Fri, 23 Jul 2021 23:25:25 +0000
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* gnu/packages/python-xyz.scm (python-xxhash): New variable.
---
gnu/packages/python-xyz.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index eef180b720..2b4ce0cba3 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -136,6 +136,7 @@
#:use-module (gnu packages crypto)
#:use-module (gnu packages databases)
#:use-module (gnu packages dbm)
+ #:use-module (gnu packages digest)
#:use-module (gnu packages djvu)
#:use-module (gnu packages docker)
#:use-module (gnu packages enchant)
@@ -13036,6 +13037,31 @@ fast xml and html manipulation.")
@end itemize")
(license license:bsd-2)))
+(define-public python-xxhash
+ (package
+ (name "python-xxhash")
+ (version "2.0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "xxhash" version))
+ (sha256
+ (base32 "0jbvz19acznq00544gcsjg05fkvrmwbnwdfgrvwss3i1ys6avgmp"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'use-system-xxhash
+ (lambda _
+ (setenv "XXHASH_LINK_SO" "1"))))))
+ (inputs
+ `(("xxhash" ,xxhash)))
+ (home-page "https://github.com/ifduyue/python-xxhash")
+ (synopsis "Python binding for xxHash")
+ (description "This package provides a Python interface binding for the
+xxHash non-cryptographic hash algorithm.")
+ (license license:bsd-2)))
+
(define-public python-anyjson
(package
(name "python-anyjson")
--
2.30.2
guix-patches@HIDDEN:bug#49207; Package guix-patches.
Full text available.
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From: Vinicius Monego <monego@HIDDEN>
To: 49207 <at> debbugs.gnu.org
Subject: [PATCH 1/6] gnu: Add python-imagehash.
Date: Fri, 23 Jul 2021 23:25:24 +0000
Message-Id: <20210723232529.23745-2-monego@HIDDEN>
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* gnu/packages/python-xyz.scm (python-imagehash): New variable.
---
gnu/packages/python-xyz.scm | 41 +++++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index d8c3fbec07..eef180b720 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -12995,6 +12995,47 @@ The API is as much as possible the similar to jQuery. pyquery uses lxml for
fast xml and html manipulation.")
(license license:bsd-3)))
+(define-public python-imagehash
+ (package
+ (name "python-imagehash")
+ (version "4.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "ImageHash" version))
+ (sha256
+ (base32 "0kgiksjggw2warfz5d04fr3iph47vwxcb8jrlj41ljkhrc3ahsd9"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "pytest")))))))
+ (native-inputs
+ `(("python-pytest" ,python-pytest)))
+ (propagated-inputs
+ `(("python-numpy" ,python-numpy)
+ ("python-pillow" ,python-pillow)
+ ("python-pywavelets" ,python-pywavelets)
+ ("python-scipy" ,python-scipy)
+ ("python-six" ,python-six)))
+ (home-page "https://github.com/JohannesBuchner/imagehash")
+ (synopsis "Image hashing library")
+ (description "ImageHash is an Image hashing library. It supports:
+
+@itemize
+@item Average hashing
+@item Perceptual hashing
+@item Difference hashing
+@item Wavelet hashing
+@item HSV color hashing (colorhash)
+@item Crop-resistant hashing
+@end itemize")
+ (license license:bsd-2)))
+
(define-public python-anyjson
(package
(name "python-anyjson")
--
2.30.2
guix-patches@HIDDEN:bug#49207; Package guix-patches.
Full text available.Received: (at 49207) by debbugs.gnu.org; 23 Jul 2021 23:26:10 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Fri Jul 23 19:26:10 2021 Received: from localhost ([127.0.0.1]:44895 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1m74YT-0007iX-Oh for submit <at> debbugs.gnu.org; Fri, 23 Jul 2021 19:26:09 -0400 Received: from mout01.posteo.de ([185.67.36.65]:50301) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <monego@HIDDEN>) id 1m74YQ-0007hz-Ot for 49207 <at> debbugs.gnu.org; Fri, 23 Jul 2021 19:26:08 -0400 Received: from submission (posteo.de [89.146.220.130]) by mout01.posteo.de (Postfix) with ESMTPS id 85B4B240028 for <49207 <at> debbugs.gnu.org>; Sat, 24 Jul 2021 01:26:00 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1627082760; bh=A2OPaEQxCZLBXFK0bfiVOKb+3MKc9tQeg8EFZ5n1nKE=; h=From:To:Cc:Subject:Date:From; b=XY225wL1uBcShY6gEOSSgtM5i0KhYPrYGbzR5cqY/OYkCxNmlcuz6I1Icxp6JoRH4 5837m1SIhMNGkIA1UdpgUw/HHmMlXsDnS26PFDe2ZNmBqfF2od/SRO5xzaW8NA05xj 8myC7Wia/FynGaPYk6BCi5Tkgnb1h7F1dFtpJZDnC1VdxbEiC5k/QrZqgBsJPY/RZC qRLjYa1mR7kHDUEDrm/Bqo6SmgYDrix6hY4unwz2a/rOvJf1nD00yLNv7NXOxU8PSs 1bFkb7HWB6kozaLxH//Q1PCfmttf56wUQZ7KzGoikqiI9N+zQQivS32ZRddJ3GxLZ8 1j+L79Lz88gaA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4GWln338Bhz6tm9; Sat, 24 Jul 2021 01:25:58 +0200 (CEST) From: Vinicius Monego <monego@HIDDEN> To: 49207 <at> debbugs.gnu.org Subject: [PATCH 0/6] gnu: Add python-iris (scitools). Date: Fri, 23 Jul 2021 23:25:23 +0000 Message-Id: <20210723232529.23745-1-monego@HIDDEN> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 49207 Cc: Vinicius Monego <monego@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.7 (-) Resending with send-email for convenience, without changes. Vinicius Monego (6): gnu: Add python-imagehash. gnu: Add python-xxhash. gnu: Add python-antlr4. gnu: Add python-cf-units. gnu: Add python-pyke. gnu: Add python-iris. gnu/packages/geo.scm | 114 ++++++++++++++++++++++++++++++++++ gnu/packages/python-xyz.scm | 119 ++++++++++++++++++++++++++++++++++++ 2 files changed, 233 insertions(+) -- 2.30.2
guix-patches@HIDDEN:bug#49207; Package guix-patches.
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(scitools) From: Vinicius Monego <monego@HIDDEN> To: guix-patches@HIDDEN Date: Thu, 24 Jun 2021 12:39:15 +0000 Content-Type: multipart/mixed; boundary="=-uogbWBdJM38X8gppFZAb" MIME-Version: 1.0 Received-SPF: pass client-ip=185.67.36.66; envelope-from=monego@HIDDEN; helo=mout02.posteo.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, RCVD_IN_MSPIKE_H4=0.001, RCVD_IN_MSPIKE_WL=0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: 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Vinicius Monego <monego@HIDDEN>:guix-patches@HIDDEN.
Full text available.guix-patches@HIDDEN:bug#49207; Package guix-patches.
Full text available.
GNU bug tracking system
Copyright (C) 1999 Darren O. Benham,
1997 nCipher Corporation Ltd,
1994-97 Ian Jackson.