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Subject: [PATCH v6 3/6] gnu: openfoam-org: Improve internal path handling.
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* gnu/packages/simulation.scm (openfoam-org): Improve handling of interna=
l=0D=0Apath WM_PROJECT_DIR.=0D=0A=0D=0AChange-Id: I43de76fb009f955294686a=
0b45bf3dc0217e7dc7=0D=0A---=0D=0A gnu/packages/simulation.scm | 57 ++++++=
++++++++++++++++++++++---------=0D=0A 1 file changed, 43 insertions(+), 1=
4 deletions(-)=0D=0A=0D=0Adiff --git a/gnu/packages/simulation.scm b/gnu/=
packages/simulation.scm=0D=0Aindex 73e53fe35f..75eb070f64 100644=0D=0A---=
a/gnu/packages/simulation.scm=0D=0A+++ b/gnu/packages/simulation.scm=0D=0A=
@@ -197,8 +197,10 @@ (define-public openfoam-org=0D=0A ;; Executabl=
e files and shared libraries are located in the 'platforms'=0D=0A ;=
; subdirectory.=0D=0A #:strip-directories=0D=0A- #~(list "shar=
e/OpenFOAM/platforms/linux64GccDPInt32Opt/bin"=0D=0A- "share=
/OpenFOAM/platforms/linux64GccDPInt32Opt/lib")=0D=0A+ #~(list (strin=
g-append "OpenFOAM-" #$(package-version this-package)=0D=0A+ =
"/platforms/linux64GccDPInt32Opt/bin")=0D=0A+=09 (st=
ring-append "OpenFOAM-" #$(package-version this-package)=0D=0A+ =
"/platforms/linux64GccDPInt32Opt/lib"))=0D=0A=20=0D=0A=
#:modules=0D=0A '((ice-9 ftw)=0D=0A@@ -278,7 +280,9 @@ (defi=
ne-public openfoam-org=0D=0A =
"/lib,")) "" libraries))=0D=0A (openfoa=
m-lib=0D=0A (string-append #$output=0D=0A- =
"/share/OpenFOAM/platforms/linux64GccDP=
Int32Opt/lib"))=0D=0A+ "/share/Ope=
nFOAM-"=0D=0A+ #$(package-version =
this-package)=0D=0A+ "/platforms/l=
inux64GccDPInt32Opt/lib"))=0D=0A (ldflags=0D=0A =
(string-append "-Wl,"=0D=0A =
rpaths=0D=0A@@ -338,19 +342,32 @@ (define-public openf=
oam-org=0D=0A ;; (with-directory-excursion "tutorials"=0D=
=0A ;; (invoke "bash" "-c" "source ../etc/bashrc && ./All=
test"))=0D=0A ) #t))=0D=0A+ (add-before 'install=
'set-paths=0D=0A+ (lambda _=0D=0A+ (let ((instal=
l-path (string-append #$output=0D=0A+=09=09=09=09 "/share=
/OpenFOAM-"=0D=0A+ #$(pac=
kage-version this-package))))=0D=0A+ (substitute* "etc/bas=
hrc"=0D=0A+=09 (("^\\[ \"\\$BASH\".*$") "")=0D=0A+=09 (=
("^export FOAM_INST_DIR=3D\\$\\(cd.*$")=0D=0A+=09 (string-appen=
d "export FOAM_INST_DIR=3D" install-path "\n"))=0D=0A+=09 (("^ex=
port FOAM_INST_DIR=3D\\$HOME.*$") ""))) #t))=0D=0A (replace 'in=
stall=0D=0A (lambda _=0D=0A- (let ((install-dir =
(string-append #$output=0D=0A- =
"/share/OpenFOAM")))=0D=0A- (mkdir-p install-dir) ;cr=
eate install directory=0D=0A+ (let ((install-path (string-ap=
pend #$output=0D=0A+ "/sh=
are/OpenFOAM-"=0D=0A+ #$(=
package-version this-package))))=0D=0A+ (mkdir-p install-p=
ath) ;create install directory=0D=0A ;; move contents of =
build directory to install directory=0D=0A- (copy-recursiv=
ely "." install-dir))))=0D=0A+ (copy-recursively "." insta=
ll-path))))=0D=0A (add-after 'install 'add-symbolic-link=0D=0A =
(lambda _=0D=0A (let* ((bin (string-append #$ou=
tput "/bin"))=0D=0A (lib (string-append #$output "/l=
ib"))=0D=0A+ (etc (string-append #$output "/etc"))=0D=
=0A (openfoam (string-append #$output=0D=0A- =
"/share/OpenFOAM"))=0D=0A+ =
"/share/OpenFOAM-"=0D=0A+ =
#$(package-version this-package)))=0D=0A=
(build-bin (string-append openfoam=0D=0A =
"/platforms/linux64GccDPInt32Opt/bin=
"))=0D=0A (build-lib (string-append openfoam=0D=0A@@=
-373,12 +390,24 @@ (define-public openfoam-org=0D=0A =
(string-append bin "/" file))))=0D=0A =
(scandir foam-bin))=0D=0A ;; add symbolic link=
for standard 'lib' directory=0D=0A- (symlink build-lib li=
b)) #t)))))=0D=0A- (native-search-paths=0D=0A- (list (search-path-=
specification=0D=0A- (variable "WM_PROJECT_DIR")=0D=0A- =
(separator #f)=0D=0A- (files '("share/OpenFOAM")))))=0D=0A=
+ (symlink build-lib lib)=0D=0A+ ;; add sym=
bolic link for bashrc file=0D=0A+ (mkdir-p etc)=0D=0A+ =
(symlink (string-append openfoam "/etc/bashrc")=0D=0A+ =
(string-append etc "/bashrc"))) #t))=0D=0A+ (a=
dd-after 'add-symbolic-link 'wrap=0D=0A+ (lambda* (#:key pytho=
n inputs outputs #:allow-other-keys)=0D=0A+ (let* ((bin (str=
ing-append #$output "/bin"))=0D=0A+ (openfoam (string=
-append #$output=0D=0A+ "/sh=
are/OpenFOAM-"=0D=0A+ #$(pac=
kage-version this-package))))=0D=0A+ (for-each=0D=0A+ =
(lambda (program)=0D=0A+ (unless (member pr=
ogram=0D=0A+ '("." ".."))=0D=0A+ =
(wrap-program (string-append bin "/" program)=0D=0A+ =
`("WM_PROJECT_DIR" ":" prefix (,openfoam)))))=0D=0A+ =
(scandir bin))))))))=0D=0A ;; Note:=0D=0A ;; Tutorial=
files are installed read-only in /gnu/store.=0D=0A ;; To allow write=
permissions on files copied from the store a=0D=0A=0D=0Abase-commit: cd4=
6757c1a0f886848fbb6828c028dd2a2532767=0D=0Aprerequisite-patch-id: e928ac9=
ae5a11e33ced4f46fed14ea984b551d0c=0D=0Aprerequisite-patch-id: ff305aca256=
44db4a2b385cd2a9980df4ca457d5=0D=0A--=20=0D=0A2.41.0=0D=0A=0D=0A
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH v6 2/6] gnu: openfoam-org: Refactor dependency.
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* gnu/packages/simulation.scm (openfoam-org): Move dependency paraview to=
from=0D=0Anative-inputs to propagated-inputs.=0D=0A=0D=0AChange-Id: I64c=
53b3554acc3d7390c88bbf2bcbcac98cdc141=0D=0A---=0D=0A gnu/packages/simulat=
ion.scm | 3 +--=0D=0A 1 file changed, 1 insertion(+), 2 deletions(-)=0D=0A=
=0D=0Adiff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.=
scm=0D=0Aindex cb6f07c383..73e53fe35f 100644=0D=0A--- a/gnu/packages/simu=
lation.scm=0D=0A+++ b/gnu/packages/simulation.scm=0D=0A@@ -143,7 +143,6 @=
@ (define-public openfoam-org=0D=0A ncurses=0D=0A =
openmpi=0D=0A openssh=0D=0A- =
paraview=0D=0A pt-scotch32=0D=0A =
readline=0D=0A zlib))=0D=0A@@ -190,7 +189,7 @@ (define-=
public openfoam-org=0D=0A utfcpp=0D=0A =
vtk=0D=0A xz))=0D=0A- (propag=
ated-inputs (list gnuplot))=0D=0A+ (propagated-inputs (list paraview g=
nuplot))=0D=0A (outputs '("debug" ;~60MB=0D=0A "out"))=
=0D=0A (arguments=0D=0A=0D=0Abase-commit: cd46757c1a0f886848fbb6828c0=
28dd2a2532767=0D=0Aprerequisite-patch-id: e928ac9ae5a11e33ced4f46fed14ea9=
84b551d0c=0D=0A--=20=0D=0A2.41.0=0D=0A=0D=0A
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH v6 1/6] gnu: openfoam-org: Use gexps.
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* gnu/packages/simulation.scm (openfoam-org): Use gexps, other cosmetic c=
hanges.=0D=0A=0D=0AChange-Id: I856d9660559cb4656251cba6bc5dd31d004f1b74=0D=
=0A---=0D=0A gnu/packages/simulation.scm | 32 ++++++++++++---------------=
-----=0D=0A 1 file changed, 12 insertions(+), 20 deletions(-)=0D=0A=0D=0A=
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm=0D=
=0Aindex b2fb123815..cb6f07c383 100644=0D=0A--- a/gnu/packages/simulation=
=2Escm=0D=0A+++ b/gnu/packages/simulation.scm=0D=0A@@ -238,13 +238,10 @@ =
(define-public openfoam-org=0D=0A (string-append "export=
SCOTCH_VERSION=3Dscotch_"=0D=0A #$(packa=
ge-version pt-scotch32) "\n"))=0D=0A (("^export SCOTCH_AR=
CH_PATH=3D.*$")=0D=0A- (string-append "export SCOTCH_ARCH=
_PATH=3D"=0D=0A- (assoc-ref %build-inputs =
"pt-scotch32")=0D=0A- "\n"))) #t))=0D=0A+ =
(string-append "export SCOTCH_ARCH_PATH=3D" #$pt-scotch32=
"\n"))) #t))=0D=0A (add-before 'build 'patch-mpi=0D=0A =
(lambda _=0D=0A- (let* ((mpi-path (assoc-ref %build-inp=
uts "openmpi"))=0D=0A- (mpi-version #$(package-versio=
n openmpi)))=0D=0A+ (let* ((mpi-version #$(package-version o=
penmpi)))=0D=0A ;; specify openmpi type=0D=0A =
(substitute* "etc/bashrc"=0D=0A (("WM_MPLIB=3DSYST=
EMOPENMPI")=0D=0A@@ -254,8 +251,7 @@ (define-public openfoam-org=0D=0A =
(string-append "export FOAM_MPI=3Dopenmpi-"=0D=0A =
mpi-version "\n"))=0D=0A ((=
"export MPI_ARCH_PATH=3D.*\\$FOAM_MPI.*$")=0D=0A- (stri=
ng-append "export MPI_ARCH_PATH=3D" mpi-path=0D=0A- =
"\n")))) #t))=0D=0A+ (string-append "export=
MPI_ARCH_PATH=3D" #$openmpi "\n")))) #t))=0D=0A (add-before 'b=
uild 'patch-paraview=0D=0A (lambda _=0D=0A (sub=
stitute* "etc/config.sh/paraview"=0D=0A@@ -263,12 +259,11 @@ (define-publ=
ic openfoam-org=0D=0A (string-append "export ParaView_VE=
RSION=3D"=0D=0A #$(package-version paravi=
ew) "\n"))=0D=0A (("^export ParaView_DIR=3D.*$")=0D=0A- =
(string-append "export ParaView_DIR=3D"=0D=0A- =
(assoc-ref %build-inputs "paraview")=0D=0A- =
"\n"))) #t))=0D=0A+ (string-append =
"export ParaView_DIR=3D" #$paraview "\n"))) #t))=0D=0A (add-bef=
ore 'build 'add-rpaths=0D=0A (lambda _=0D=0A- (l=
etrec* ((libraries '("boost" "cgal"=0D=0A+ (letrec* ((librar=
ies '("boost"=0D=0A+ "cgal"=0D=0A =
"gmp"=0D=0A =
"metis"=0D=0A "mpfr"=0D=0A=
@@ -277,11 +272,10 @@ (define-public openfoam-org=0D=0A =
"zlib"=0D=0A "pa=
raview"))=0D=0A (rpaths=0D=0A- =
(fold-right (lambda (library rpaths)=0D=0A+ =
(fold-right (lambda (lib rpaths)=0D=0A =
(string-append rpaths=0D=0A =
"-rpath=3D"=0D=0A- =
(assoc-ref=0D=0A- =
%build-inputs library)=0D=0A+ =
(assoc-ref %build-inputs lib)=0D=0A =
"/lib,")) "" libraries))=0D=0A =
(openfoam-lib=0D=0A (strin=
g-append #$output=0D=0A@@ -307,13 +301,11 @@ (define-public openfoam-org=0D=
=0A (lambda _=0D=0A (let* ((vtk-version #$(vers=
ion-major+minor=0D=0A (package-versi=
on vtk)))=0D=0A- (vtk-root (assoc-ref %build-inputs "=
vtk"))=0D=0A- (vtk-inc (string-append vtk-root "/incl=
ude/vtk-" vtk-version))=0D=0A+ (vtk-inc (string-appen=
d #$vtk "/include/vtk-" vtk-version))=0D=0A (vtk-inc=
-flag (string-append "-I" vtk-inc)))=0D=0A (substitute* "=
wmake/rules/linux64Gcc/c++"=0D=0A (("\\$\\(LIB_HEADER_D=
IRS\\)" all)=0D=0A- (string-append all " " vtk-inc-flag=
" "))))=0D=0A- #t))=0D=0A+ (string-append=
all " " vtk-inc-flag " ")))) #t))=0D=0A (delete 'configure) ;n=
o configure phase=0D=0A (replace 'build=0D=0A (lamb=
da _=0D=0A@@ -400,6 +392,7 @@ (define-public openfoam-org=0D=0A ;; $ =
cd pitzDaily=0D=0A ;; $ chmod -R u+w .=0D=0A ;; $ blockMesh=0D=0A=
+ (home-page "https://openfoam.org")=0D=0A (synopsis "Framework fo=
r numerical simulation of fluid flow")=0D=0A (description=0D=0A =
"OpenFOAM provides a set of solvers and methods for tackling=0D=0A@@ -410=
,8 +403,7 @@ (define-public openfoam-org=0D=0A sharp gradients, such as t=
hose encountered in flows with shock waves and flows=0D=0A with gas/liqui=
d interfaces. Large problems may be split into smaller, connected=0D=0A =
problems for efficient solution on parallel systems.")=0D=0A- (license=
license:gpl3+)=0D=0A- (home-page "https://openfoam.org")))=0D=0A+ =
(license license:gpl3+)))=0D=0A=20=0D=0A (define-public openfoam=0D=0A =
(deprecated-package "openfoam" openfoam-org))=0D=0A=0D=0Abase-commit: cd4=
6757c1a0f886848fbb6828c028dd2a2532767=0D=0A--=20=0D=0A2.41.0=0D=0A=0D=0A
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH v5 2/6] gnu: openfoam-org: Refactor dependency.
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* gnu/packages/simulation.scm (openfoam-org): Move dependency paraview to=
from=0D=0Anative-inputs to propagated-inputs.=0D=0A=0D=0AChange-Id: I64c=
53b3554acc3d7390c88bbf2bcbcac98cdc141=0D=0A---=0D=0A gnu/packages/simulat=
ion.scm | 3 +--=0D=0A 1 file changed, 1 insertion(+), 2 deletions(-)=0D=0A=
=0D=0Adiff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.=
scm=0D=0Aindex cb6f07c383..73e53fe35f 100644=0D=0A--- a/gnu/packages/simu=
lation.scm=0D=0A+++ b/gnu/packages/simulation.scm=0D=0A@@ -143,7 +143,6 @=
@ (define-public openfoam-org=0D=0A ncurses=0D=0A =
openmpi=0D=0A openssh=0D=0A- =
paraview=0D=0A pt-scotch32=0D=0A =
readline=0D=0A zlib))=0D=0A@@ -190,7 +189,7 @@ (define-=
public openfoam-org=0D=0A utfcpp=0D=0A =
vtk=0D=0A xz))=0D=0A- (propag=
ated-inputs (list gnuplot))=0D=0A+ (propagated-inputs (list paraview g=
nuplot))=0D=0A (outputs '("debug" ;~60MB=0D=0A "out"))=
=0D=0A (arguments=0D=0A--=20=0D=0A2.41.0=0D=0A=0D=0A
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH v5 6/6] gnu: openfoam-com: Update to 2306.
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* gnu/packages/simulation.scm (openfoam-com): Update to 2306.
Change-Id: I418fa263706574b716a852c77a33c7de5ee0068d
---
gnu/packages/simulation.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index b33f24a5f4..f01044e76a 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -444,7 +444,7 @@ (define-public openfoam-com
(package
(inherit openfoam-org)
(name "openfoam-com")
- (version "2212")
+ (version "2306")
(source (origin
(method url-fetch)
(uri (string-append "https://develop.openfoam.com"
@@ -455,7 +455,7 @@ (define-public openfoam-com
".tar.gz"))
(sha256
(base32
- "0i9039hfz9gvgymkdjhjvvn5500zha3cpdbpqrzfrfi8lbz10is2"))
+ "0zlkp48vygl2a5cyl0mfpj8dsb5bffviq96rg3kws1l6ni40v7jr"))
(modules '((guix build utils)))
(snippet `(begin
(substitute* "etc/bashrc"
--
2.41.0
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH v5 4/6] gnu: openfoam-org: Improve build clean up.
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* gnu/packages/simulation.scm (openfoam-org): Improve build tree cleanup for
package reproducibility.
Change-Id: I59193f16a7d9598a9bc842f1c6091369c47906a8
---
gnu/packages/simulation.scm | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 75eb070f64..c6041643c8 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -328,7 +328,9 @@ (define-public openfoam-org
(delete-file-recursively
"platforms/linux64GccDPInt32OptOPENMPI"))
(for-each delete-file
- (find-files "." "\\.o$")) #t))
+ (find-files "." "\\.o$"))
+ ;; Remove spurious files in src tree
+ (invoke "bash" "-c" "source ./etc/bashrc && wclean all") #t))
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
--
2.41.0
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH v5 5/6] gnu: openfoam-org: Update to 11.
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* gnu/packages/simulation.scm (openfoam-org): Update to 11.=0D=0A=0D=0ACh=
ange-Id: I6f9752e8bb35754ac3f67acbaa1e4ae8b216e410=0D=0A---=0D=0A gnu/pac=
kages/simulation.scm | 17 +++++++++--------=0D=0A 1 file changed, 9 inser=
tions(+), 8 deletions(-)=0D=0A=0D=0Adiff --git a/gnu/packages/simulation.=
scm b/gnu/packages/simulation.scm=0D=0Aindex c6041643c8..b33f24a5f4 10064=
4=0D=0A--- a/gnu/packages/simulation.scm=0D=0A+++ b/gnu/packages/simulati=
on.scm=0D=0A@@ -91,17 +91,18 @@ (define-module (gnu packages simulation)=0D=
=0A (define-public openfoam-org=0D=0A (package=0D=0A (name "openfoa=
m-org")=0D=0A- (version "10.20230119")=0D=0A+ (version "11")=0D=0A =
(source (origin=0D=0A- (method git-fetch)=0D=0A- =
(uri (git-reference=0D=0A- (url (string-append "=
https://github.com/OpenFOAM/OpenFOAM-"=0D=0A- =
(version-major version)))=0D=0A- (commit (=
second (string-split version #\.)))))=0D=0A+ (method url-fet=
ch)=0D=0A+ (uri (string-append "https://github.com/OpenFOAM/=
OpenFOAM-"=0D=0A+ (version-major version=
)=0D=0A+ "/archive/"=0D=0A+ =
"version-"=0D=0A+ (=
version-major version)=0D=0A+ ".tar.gz")=
)=0D=0A (sha256=0D=0A (base32=0D=0A- =
"0icvwg7s6vnkgmdiczivia9pbrgx8nanw9a4j080fzfvdv9vxhzp"))=0D=0A- =
(file-name (git-file-name name version))=0D=0A+ =
"1h70a5ni2psx7bcx2xg6aqraj2kkbfn8mflh2akbp6k9mmpgih7b"))=0D=0A =
(modules '((guix build utils)))=0D=0A (snippet `(begi=
n=0D=0A ;; patch shell paths=0D=0A--=20=0D=0A2.=
41.0=0D=0A=0D=0A
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH v5 3/6] gnu: openfoam-org: Improve internal path handling.
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* gnu/packages/simulation.scm (openfoam-org): Improve handling of interna=
l=0D=0Apath WM_PROJECT_DIR.=0D=0A=0D=0AChange-Id: I43de76fb009f955294686a=
0b45bf3dc0217e7dc7=0D=0A---=0D=0A gnu/packages/simulation.scm | 57 ++++++=
++++++++++++++++++++++---------=0D=0A 1 file changed, 43 insertions(+), 1=
4 deletions(-)=0D=0A=0D=0Adiff --git a/gnu/packages/simulation.scm b/gnu/=
packages/simulation.scm=0D=0Aindex 73e53fe35f..75eb070f64 100644=0D=0A---=
a/gnu/packages/simulation.scm=0D=0A+++ b/gnu/packages/simulation.scm=0D=0A=
@@ -197,8 +197,10 @@ (define-public openfoam-org=0D=0A ;; Executabl=
e files and shared libraries are located in the 'platforms'=0D=0A ;=
; subdirectory.=0D=0A #:strip-directories=0D=0A- #~(list "shar=
e/OpenFOAM/platforms/linux64GccDPInt32Opt/bin"=0D=0A- "share=
/OpenFOAM/platforms/linux64GccDPInt32Opt/lib")=0D=0A+ #~(list (strin=
g-append "OpenFOAM-" #$(package-version this-package)=0D=0A+ =
"/platforms/linux64GccDPInt32Opt/bin")=0D=0A+=09 (st=
ring-append "OpenFOAM-" #$(package-version this-package)=0D=0A+ =
"/platforms/linux64GccDPInt32Opt/lib"))=0D=0A=20=0D=0A=
#:modules=0D=0A '((ice-9 ftw)=0D=0A@@ -278,7 +280,9 @@ (defi=
ne-public openfoam-org=0D=0A =
"/lib,")) "" libraries))=0D=0A (openfoa=
m-lib=0D=0A (string-append #$output=0D=0A- =
"/share/OpenFOAM/platforms/linux64GccDP=
Int32Opt/lib"))=0D=0A+ "/share/Ope=
nFOAM-"=0D=0A+ #$(package-version =
this-package)=0D=0A+ "/platforms/l=
inux64GccDPInt32Opt/lib"))=0D=0A (ldflags=0D=0A =
(string-append "-Wl,"=0D=0A =
rpaths=0D=0A@@ -338,19 +342,32 @@ (define-public openf=
oam-org=0D=0A ;; (with-directory-excursion "tutorials"=0D=
=0A ;; (invoke "bash" "-c" "source ../etc/bashrc && ./All=
test"))=0D=0A ) #t))=0D=0A+ (add-before 'install=
'set-paths=0D=0A+ (lambda _=0D=0A+ (let ((instal=
l-path (string-append #$output=0D=0A+=09=09=09=09 "/share=
/OpenFOAM-"=0D=0A+ #$(pac=
kage-version this-package))))=0D=0A+ (substitute* "etc/bas=
hrc"=0D=0A+=09 (("^\\[ \"\\$BASH\".*$") "")=0D=0A+=09 (=
("^export FOAM_INST_DIR=3D\\$\\(cd.*$")=0D=0A+=09 (string-appen=
d "export FOAM_INST_DIR=3D" install-path "\n"))=0D=0A+=09 (("^ex=
port FOAM_INST_DIR=3D\\$HOME.*$") ""))) #t))=0D=0A (replace 'in=
stall=0D=0A (lambda _=0D=0A- (let ((install-dir =
(string-append #$output=0D=0A- =
"/share/OpenFOAM")))=0D=0A- (mkdir-p install-dir) ;cr=
eate install directory=0D=0A+ (let ((install-path (string-ap=
pend #$output=0D=0A+ "/sh=
are/OpenFOAM-"=0D=0A+ #$(=
package-version this-package))))=0D=0A+ (mkdir-p install-p=
ath) ;create install directory=0D=0A ;; move contents of =
build directory to install directory=0D=0A- (copy-recursiv=
ely "." install-dir))))=0D=0A+ (copy-recursively "." insta=
ll-path))))=0D=0A (add-after 'install 'add-symbolic-link=0D=0A =
(lambda _=0D=0A (let* ((bin (string-append #$ou=
tput "/bin"))=0D=0A (lib (string-append #$output "/l=
ib"))=0D=0A+ (etc (string-append #$output "/etc"))=0D=
=0A (openfoam (string-append #$output=0D=0A- =
"/share/OpenFOAM"))=0D=0A+ =
"/share/OpenFOAM-"=0D=0A+ =
#$(package-version this-package)))=0D=0A=
(build-bin (string-append openfoam=0D=0A =
"/platforms/linux64GccDPInt32Opt/bin=
"))=0D=0A (build-lib (string-append openfoam=0D=0A@@=
-373,12 +390,24 @@ (define-public openfoam-org=0D=0A =
(string-append bin "/" file))))=0D=0A =
(scandir foam-bin))=0D=0A ;; add symbolic link=
for standard 'lib' directory=0D=0A- (symlink build-lib li=
b)) #t)))))=0D=0A- (native-search-paths=0D=0A- (list (search-path-=
specification=0D=0A- (variable "WM_PROJECT_DIR")=0D=0A- =
(separator #f)=0D=0A- (files '("share/OpenFOAM")))))=0D=0A=
+ (symlink build-lib lib)=0D=0A+ ;; add sym=
bolic link for bashrc file=0D=0A+ (mkdir-p etc)=0D=0A+ =
(symlink (string-append openfoam "/etc/bashrc")=0D=0A+ =
(string-append etc "/bashrc"))) #t))=0D=0A+ (a=
dd-after 'add-symbolic-link 'wrap=0D=0A+ (lambda* (#:key pytho=
n inputs outputs #:allow-other-keys)=0D=0A+ (let* ((bin (str=
ing-append #$output "/bin"))=0D=0A+ (openfoam (string=
-append #$output=0D=0A+ "/sh=
are/OpenFOAM-"=0D=0A+ #$(pac=
kage-version this-package))))=0D=0A+ (for-each=0D=0A+ =
(lambda (program)=0D=0A+ (unless (member pr=
ogram=0D=0A+ '("." ".."))=0D=0A+ =
(wrap-program (string-append bin "/" program)=0D=0A+ =
`("WM_PROJECT_DIR" ":" prefix (,openfoam)))))=0D=0A+ =
(scandir bin))))))))=0D=0A ;; Note:=0D=0A ;; Tutorial=
files are installed read-only in /gnu/store.=0D=0A ;; To allow write=
permissions on files copied from the store a=0D=0A--=20=0D=0A2.41.0=0D=0A=
=0D=0A
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH v5 1/6] gnu: openfoam-org: Use gexps.
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* gnu/packages/simulation.scm (openfoam-org): Use gexps, other cosmetic c=
hanges.=0D=0A=0D=0AChange-Id: I856d9660559cb4656251cba6bc5dd31d004f1b74=0D=
=0A---=0D=0A gnu/packages/simulation.scm | 32 ++++++++++++---------------=
-----=0D=0A 1 file changed, 12 insertions(+), 20 deletions(-)=0D=0A=0D=0A=
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm=0D=
=0Aindex b2fb123815..cb6f07c383 100644=0D=0A--- a/gnu/packages/simulation=
=2Escm=0D=0A+++ b/gnu/packages/simulation.scm=0D=0A@@ -238,13 +238,10 @@ =
(define-public openfoam-org=0D=0A (string-append "export=
SCOTCH_VERSION=3Dscotch_"=0D=0A #$(packa=
ge-version pt-scotch32) "\n"))=0D=0A (("^export SCOTCH_AR=
CH_PATH=3D.*$")=0D=0A- (string-append "export SCOTCH_ARCH=
_PATH=3D"=0D=0A- (assoc-ref %build-inputs =
"pt-scotch32")=0D=0A- "\n"))) #t))=0D=0A+ =
(string-append "export SCOTCH_ARCH_PATH=3D" #$pt-scotch32=
"\n"))) #t))=0D=0A (add-before 'build 'patch-mpi=0D=0A =
(lambda _=0D=0A- (let* ((mpi-path (assoc-ref %build-inp=
uts "openmpi"))=0D=0A- (mpi-version #$(package-versio=
n openmpi)))=0D=0A+ (let* ((mpi-version #$(package-version o=
penmpi)))=0D=0A ;; specify openmpi type=0D=0A =
(substitute* "etc/bashrc"=0D=0A (("WM_MPLIB=3DSYST=
EMOPENMPI")=0D=0A@@ -254,8 +251,7 @@ (define-public openfoam-org=0D=0A =
(string-append "export FOAM_MPI=3Dopenmpi-"=0D=0A =
mpi-version "\n"))=0D=0A ((=
"export MPI_ARCH_PATH=3D.*\\$FOAM_MPI.*$")=0D=0A- (stri=
ng-append "export MPI_ARCH_PATH=3D" mpi-path=0D=0A- =
"\n")))) #t))=0D=0A+ (string-append "export=
MPI_ARCH_PATH=3D" #$openmpi "\n")))) #t))=0D=0A (add-before 'b=
uild 'patch-paraview=0D=0A (lambda _=0D=0A (sub=
stitute* "etc/config.sh/paraview"=0D=0A@@ -263,12 +259,11 @@ (define-publ=
ic openfoam-org=0D=0A (string-append "export ParaView_VE=
RSION=3D"=0D=0A #$(package-version paravi=
ew) "\n"))=0D=0A (("^export ParaView_DIR=3D.*$")=0D=0A- =
(string-append "export ParaView_DIR=3D"=0D=0A- =
(assoc-ref %build-inputs "paraview")=0D=0A- =
"\n"))) #t))=0D=0A+ (string-append =
"export ParaView_DIR=3D" #$paraview "\n"))) #t))=0D=0A (add-bef=
ore 'build 'add-rpaths=0D=0A (lambda _=0D=0A- (l=
etrec* ((libraries '("boost" "cgal"=0D=0A+ (letrec* ((librar=
ies '("boost"=0D=0A+ "cgal"=0D=0A =
"gmp"=0D=0A =
"metis"=0D=0A "mpfr"=0D=0A=
@@ -277,11 +272,10 @@ (define-public openfoam-org=0D=0A =
"zlib"=0D=0A "pa=
raview"))=0D=0A (rpaths=0D=0A- =
(fold-right (lambda (library rpaths)=0D=0A+ =
(fold-right (lambda (lib rpaths)=0D=0A =
(string-append rpaths=0D=0A =
"-rpath=3D"=0D=0A- =
(assoc-ref=0D=0A- =
%build-inputs library)=0D=0A+ =
(assoc-ref %build-inputs lib)=0D=0A =
"/lib,")) "" libraries))=0D=0A =
(openfoam-lib=0D=0A (strin=
g-append #$output=0D=0A@@ -307,13 +301,11 @@ (define-public openfoam-org=0D=
=0A (lambda _=0D=0A (let* ((vtk-version #$(vers=
ion-major+minor=0D=0A (package-versi=
on vtk)))=0D=0A- (vtk-root (assoc-ref %build-inputs "=
vtk"))=0D=0A- (vtk-inc (string-append vtk-root "/incl=
ude/vtk-" vtk-version))=0D=0A+ (vtk-inc (string-appen=
d #$vtk "/include/vtk-" vtk-version))=0D=0A (vtk-inc=
-flag (string-append "-I" vtk-inc)))=0D=0A (substitute* "=
wmake/rules/linux64Gcc/c++"=0D=0A (("\\$\\(LIB_HEADER_D=
IRS\\)" all)=0D=0A- (string-append all " " vtk-inc-flag=
" "))))=0D=0A- #t))=0D=0A+ (string-append=
all " " vtk-inc-flag " ")))) #t))=0D=0A (delete 'configure) ;n=
o configure phase=0D=0A (replace 'build=0D=0A (lamb=
da _=0D=0A@@ -400,6 +392,7 @@ (define-public openfoam-org=0D=0A ;; $ =
cd pitzDaily=0D=0A ;; $ chmod -R u+w .=0D=0A ;; $ blockMesh=0D=0A=
+ (home-page "https://openfoam.org")=0D=0A (synopsis "Framework fo=
r numerical simulation of fluid flow")=0D=0A (description=0D=0A =
"OpenFOAM provides a set of solvers and methods for tackling=0D=0A@@ -410=
,8 +403,7 @@ (define-public openfoam-org=0D=0A sharp gradients, such as t=
hose encountered in flows with shock waves and flows=0D=0A with gas/liqui=
d interfaces. Large problems may be split into smaller, connected=0D=0A =
problems for efficient solution on parallel systems.")=0D=0A- (license=
license:gpl3+)=0D=0A- (home-page "https://openfoam.org")))=0D=0A+ =
(license license:gpl3+)))=0D=0A=20=0D=0A (define-public openfoam=0D=0A =
(deprecated-package "openfoam" openfoam-org))=0D=0A=0D=0Abase-commit: cd4=
6757c1a0f886848fbb6828c028dd2a2532767=0D=0A--=20=0D=0A2.41.0=0D=0A=0D=0A
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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guix-patches@HIDDEN:bug#66262; Package guix-patches.
Full text available.Received: (at 66262) by debbugs.gnu.org; 29 Nov 2023 19:55:14 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Wed Nov 29 14:55:13 2023 Received: from localhost ([127.0.0.1]:51510 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1r8QeP-0006hY-Ly for submit <at> debbugs.gnu.org; Wed, 29 Nov 2023 14:55:13 -0500 Received: from mail-4317.proton.ch ([185.70.43.17]:38067) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <attila@HIDDEN>) id 1r8QeO-0006hA-4L for 66262 <at> debbugs.gnu.org; Wed, 29 Nov 2023 14:55:12 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=lendvai.name; s=protonmail; t=1701287696; x=1701546896; bh=orpFJOIomesxz+e8ZM1CXOM7tye0sFOhf0I1OTwohe8=; h=Date:To:From:Cc:Subject:Message-ID:In-Reply-To:References: Feedback-ID:From:To:Cc:Date:Subject:Reply-To:Feedback-ID: Message-ID:BIMI-Selector; b=pr+wVeYQH6D8bNE8bqko7j/fnGe/n+uWwbDn1S+OOxTIQFnvXkMtnnENNE5cyoXWt PF5aP6W5U0FBIy3TPsvDUSlRInqUqSp4rIZAKX3PMHIxPJdDeVX2uhLbpwfaq9RY7v 3eJfGAJ2jndB6jVguI/om5Lr7MCPJ0Mw4PY1AynO3UsbiTjPB7DQkLBkTHy6Wlge5e qbgzhk9wm/M0cxf+95SxjqBRbvHRYxYlVcfxz1lcp2J1W6SriDUxm6NRl1YNOSxZ/O KajcDhxBl5D6EmnehYSXNJMtrrDew3aeG9kIsbm5ULftzow+cIPyga5ZRah8P4gUZ8 7Gi6VxC3Jzu9g== Date: Wed, 29 Nov 2023 19:54:48 +0000 To: "reza.housseini@HIDDEN" <reza.housseini@HIDDEN> From: Attila Lendvai <attila@HIDDEN> Subject: Re: Failed to build in QA Message-ID: <xwNeT6gUzeFCqfOOAg53EInzT5z7xQjDmgAGLj0krB6NsrtlH_SoqmcHO89p9ACLbrX2cBsVSew0AZHGPjhsZQ7u4EMUPyOsmif21Bbs2dU=@lendvai.name> In-Reply-To: <5B2CC699-5047-4F0C-9245-985BE9AA82B8@HIDDEN> References: <03D1B03C-320E-4722-80BC-D35CB0DBDBA3@HIDDEN> <87cyxth2jp.fsf@HIDDEN> <FDFE0A4D-3301-427F-A7D5-225BD55BD225@HIDDEN> <87zg0weyde.fsf@HIDDEN> <2c3bb152-6928-cdcd-a8b6-593218a6d4e9@HIDDEN> <DBFF3BC7-263C-454D-83B1-303F2D864A3E@HIDDEN> <d54d6122-b50f-3189-f500-1475f07d1269@HIDDEN> <87plzslez6.fsf@HIDDEN> <5B2CC699-5047-4F0C-9245-985BE9AA82B8@HIDDEN> Feedback-ID: 28384833:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 66262 Cc: guix-devel@HIDDEN, 66262 <at> debbugs.gnu.org, Christopher Baines <mail@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) > > The other issue with the v4 series is that Patchwork has got confused > > and only picked out the first of the v4 patches. The threading also > > looks weird to me in my email client, but I'm not quite sure why. How > > did you send the v4 patches? > > > I sent them with git send-mail but I also noticed that the order got > mixed up in issues.guix.gnu.org, no idea how this happened... i also see this every once in a while. i guess it's because the SMTP server= -farm receives mutliple emails in close proximity, and they end up reaching= debbugs in a different order. -- =E2=80=A2 attila lendvai =E2=80=A2 PGP: 963F 5D5F 45C7 DFCD 0A39 -- =E2=80=9CIn matters of conscience, the law of majority has no place.= =E2=80=9D =09=E2=80=94 Mahatma Gandhi (1869=E2=80=931948)
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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([2001:1715:4e29:5140:8ebe:acf6:6afe:7bb8]) by smtp.gmail.com with ESMTPSA id cw13-20020a056402228d00b0054b651ce8a1sm3513529edb.45.2023.11.29.08.36.00 (version=TLS1_3 cipher=TLS_AES_128_GCM_SHA256 bits=128/128); Wed, 29 Nov 2023 08:36:01 -0800 (PST) Date: Wed, 29 Nov 2023 16:35:57 +0000 From: "reza.housseini@HIDDEN" <reza.housseini@HIDDEN> To: Christopher Baines <mail@HIDDEN> Subject: Re: Failed to build in QA In-Reply-To: <87plzslez6.fsf@HIDDEN> References: <03D1B03C-320E-4722-80BC-D35CB0DBDBA3@HIDDEN> <87cyxth2jp.fsf@HIDDEN> <FDFE0A4D-3301-427F-A7D5-225BD55BD225@HIDDEN> <87zg0weyde.fsf@HIDDEN> <2c3bb152-6928-cdcd-a8b6-593218a6d4e9@HIDDEN> <DBFF3BC7-263C-454D-83B1-303F2D864A3E@HIDDEN> <d54d6122-b50f-3189-f500-1475f07d1269@HIDDEN> <87plzslez6.fsf@HIDDEN> Message-ID: <5B2CC699-5047-4F0C-9245-985BE9AA82B8@HIDDEN> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 66262 X-Mailman-Approved-At: Wed, 29 Nov 2023 12:12:15 -0500 Cc: guix-devel@HIDDEN, 66262 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) >There's two issues, one is the machine running Patchwork is low on disk >space, and that keeps stopping new messages being processed=2E I've >resolved that for now=2E Thanks! >The other issue with the v4 series is that Patchwork has got confused >and only picked out the first of the v4 patches=2E The threading also >looks weird to me in my email client, but I'm not quite sure why=2E How >did you send the v4 patches? I sent them with git send-mail but I also noticed that the order got mixed= up in issues=2Eguix=2Egnu=2Eorg, no idea how this happened=2E=2E=2E
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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guix-patches@HIDDEN:bug#66262; Package guix-patches.
Full text available.Received: (at 66262) by debbugs.gnu.org; 29 Nov 2023 16:08:28 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Wed Nov 29 11:08:27 2023 Received: from localhost ([127.0.0.1]:50785 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1r8N6x-0000EA-Lb for submit <at> debbugs.gnu.org; Wed, 29 Nov 2023 11:08:27 -0500 Received: from mira.cbaines.net ([212.71.252.8]:43052) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <mail@HIDDEN>) id 1r8N6v-0000E1-JD for 66262 <at> debbugs.gnu.org; Wed, 29 Nov 2023 11:08:26 -0500 Received: from localhost (unknown [217.155.61.229]) by mira.cbaines.net (Postfix) with ESMTPSA id CA06127BBE2; Wed, 29 Nov 2023 16:08:16 +0000 (GMT) Received: from felis (localhost [127.0.0.1]) by localhost (OpenSMTPD) with ESMTP id 74e59493; Wed, 29 Nov 2023 16:08:16 +0000 (UTC) References: <03D1B03C-320E-4722-80BC-D35CB0DBDBA3@HIDDEN> <87cyxth2jp.fsf@HIDDEN> <FDFE0A4D-3301-427F-A7D5-225BD55BD225@HIDDEN> <87zg0weyde.fsf@HIDDEN> <2c3bb152-6928-cdcd-a8b6-593218a6d4e9@HIDDEN> <DBFF3BC7-263C-454D-83B1-303F2D864A3E@HIDDEN> <d54d6122-b50f-3189-f500-1475f07d1269@HIDDEN> User-agent: mu4e 1.10.7; emacs 29.1 From: Christopher Baines <mail@HIDDEN> To: Reza Housseini <reza.housseini@HIDDEN> Subject: Re: Failed to build in QA Date: Wed, 29 Nov 2023 16:06:43 +0000 In-reply-to: <d54d6122-b50f-3189-f500-1475f07d1269@HIDDEN> Message-ID: <87plzslez6.fsf@HIDDEN> MIME-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha512; protocol="application/pgp-signature" X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 66262 Cc: guix-devel@HIDDEN, 66262 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) --=-=-= Content-Type: text/plain Reza Housseini <reza.housseini@HIDDEN> writes: > Hi Christopher > > I submitted a new revision to the issue, but the QA link shows > > Issue not found > This could mean the issue does not exist, it has no patches or has > been closed. > > do you know what the problem is here? There's two issues, one is the machine running Patchwork is low on disk space, and that keeps stopping new messages being processed. I've resolved that for now. The other issue with the v4 series is that Patchwork has got confused and only picked out the first of the v4 patches. The threading also looks weird to me in my email client, but I'm not quite sure why. How did you send the v4 patches? Thanks, Chris --=-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQKlBAEBCgCPFiEEPonu50WOcg2XVOCyXiijOwuE9XcFAmVnYe1fFIAAAAAALgAo aXNzdWVyLWZwckBub3RhdGlvbnMub3BlbnBncC5maWZ0aGhvcnNlbWFuLm5ldDNF ODlFRUU3NDU4RTcyMEQ5NzU0RTBCMjVFMjhBMzNCMEI4NEY1NzcRHG1haWxAY2Jh aW5lcy5uZXQACgkQXiijOwuE9XdEBg//a2oqbjDnb6j7lGTyBw4WuaGbDZaN4vEl v3yrwZGO2sLY0TiFDXDER8NGLyIkKqb7aNQDND0GT8V30yczZfv/9oTUwjMwBO6M E6pocTYUf4iaQazp/p6iilc9NRg/S7aaAI4o5KWLBgXQXWBCrgoDgUm4iSXOSGSM 8UbKjBchem6NTfx6yP3J5ZZuAGDMfY7B3GJkGX2Hp88NVUyFOwdFmG/2/INqcyqC r84FLIHg3EnPFPSge0jm9q4cED+SSYGWYqHGf+Ts7hkzBOu/IXsv6rqWAelX3lXG nhKTYYPvf8E92SyPpRdU1iYWWgzX0uR+MvC5PzFTrOPRK/UlLvFPs62FV/Tz3NHG pw/IbkQjoVb961GUAGAYKnMs0OpFTBGghHOeLu5a6csf5umg9JkvMtLMBSHfjaH2 kkey9Gc9lMJIrmTIaNE5KRXPMfP1MwaUF5ps2tNZ965tELCDWj5DOjp6wKlLWnFX kgLwMbLFXbhAG/A84Hppaw2NmJ3YHoLbcvXcfv6+LNfxZC4JZdzcuK34xXhxgR93 E18Wsj0KPBZ8ll7C7UHIFiYvCtnAaDutLwzQizzvJO8UP/iVkcxmadDQIDS/iu0e Lv5vWquL3hCC04N/C8bEoUFi+E55rj4rxqyB/locPm+NKGYTALT6hwzGrPrv5E5Q eIV8i1SFeJA= =zP/g -----END PGP SIGNATURE----- --=-=-=--
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH v4 5/6] gnu: openfoam-org: Update to 11.
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* gnu/packages/simulation.scm (openfoam-org): Update to 11.=0D=0A=0D=0ACh=
ange-Id: I6f9752e8bb35754ac3f67acbaa1e4ae8b216e410=0D=0A---=0D=0A gnu/pac=
kages/simulation.scm | 17 +++++++++--------=0D=0A 1 file changed, 9 inser=
tions(+), 8 deletions(-)=0D=0A=0D=0Adiff --git a/gnu/packages/simulation.=
scm b/gnu/packages/simulation.scm=0D=0Aindex c6041643c8..b33f24a5f4 10064=
4=0D=0A--- a/gnu/packages/simulation.scm=0D=0A+++ b/gnu/packages/simulati=
on.scm=0D=0A@@ -91,17 +91,18 @@ (define-module (gnu packages simulation)=0D=
=0A (define-public openfoam-org=0D=0A (package=0D=0A (name "openfoa=
m-org")=0D=0A- (version "10.20230119")=0D=0A+ (version "11")=0D=0A =
(source (origin=0D=0A- (method git-fetch)=0D=0A- =
(uri (git-reference=0D=0A- (url (string-append "=
https://github.com/OpenFOAM/OpenFOAM-"=0D=0A- =
(version-major version)))=0D=0A- (commit (=
second (string-split version #\.)))))=0D=0A+ (method url-fet=
ch)=0D=0A+ (uri (string-append "https://github.com/OpenFOAM/=
OpenFOAM-"=0D=0A+ (version-major version=
)=0D=0A+ "/archive/"=0D=0A+ =
"version-"=0D=0A+ (=
version-major version)=0D=0A+ ".tar.gz")=
)=0D=0A (sha256=0D=0A (base32=0D=0A- =
"0icvwg7s6vnkgmdiczivia9pbrgx8nanw9a4j080fzfvdv9vxhzp"))=0D=0A- =
(file-name (git-file-name name version))=0D=0A+ =
"1h70a5ni2psx7bcx2xg6aqraj2kkbfn8mflh2akbp6k9mmpgih7b"))=0D=0A =
(modules '((guix build utils)))=0D=0A (snippet `(begi=
n=0D=0A ;; patch shell paths=0D=0A--=20=0D=0A2.=
41.0=0D=0A=0D=0A
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Subject: [PATCH v4 4/6] gnu: openfoam-org: Improve build clean up.
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* gnu/packages/simulation.scm (openfoam-org): Improve build tree cleanup for
package reproducibility.
Change-Id: I59193f16a7d9598a9bc842f1c6091369c47906a8
---
gnu/packages/simulation.scm | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 75eb070f64..c6041643c8 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -328,7 +328,9 @@ (define-public openfoam-org
(delete-file-recursively
"platforms/linux64GccDPInt32OptOPENMPI"))
(for-each delete-file
- (find-files "." "\\.o$")) #t))
+ (find-files "." "\\.o$"))
+ ;; Remove spurious files in src tree
+ (invoke "bash" "-c" "source ./etc/bashrc && wclean all") #t))
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
--
2.41.0
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH v4 6/6] gnu: openfoam-com: Update to 2306.
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* gnu/packages/simulation.scm (openfoam-com): Update to 2306.
Change-Id: I418fa263706574b716a852c77a33c7de5ee0068d
---
gnu/packages/simulation.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index b33f24a5f4..f01044e76a 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -444,7 +444,7 @@ (define-public openfoam-com
(package
(inherit openfoam-org)
(name "openfoam-com")
- (version "2212")
+ (version "2306")
(source (origin
(method url-fetch)
(uri (string-append "https://develop.openfoam.com"
@@ -455,7 +455,7 @@ (define-public openfoam-com
".tar.gz"))
(sha256
(base32
- "0i9039hfz9gvgymkdjhjvvn5500zha3cpdbpqrzfrfi8lbz10is2"))
+ "0zlkp48vygl2a5cyl0mfpj8dsb5bffviq96rg3kws1l6ni40v7jr"))
(modules '((guix build utils)))
(snippet `(begin
(substitute* "etc/bashrc"
--
2.41.0
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH v4 3/6] gnu: openfoam-org: Improve internal path handling.
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* gnu/packages/simulation.scm (openfoam-org): Improve handling of interna=
l=0D=0Apath WM_PROJECT_DIR.=0D=0A=0D=0AChange-Id: I43de76fb009f955294686a=
0b45bf3dc0217e7dc7=0D=0A---=0D=0A gnu/packages/simulation.scm | 57 ++++++=
++++++++++++++++++++++---------=0D=0A 1 file changed, 43 insertions(+), 1=
4 deletions(-)=0D=0A=0D=0Adiff --git a/gnu/packages/simulation.scm b/gnu/=
packages/simulation.scm=0D=0Aindex 73e53fe35f..75eb070f64 100644=0D=0A---=
a/gnu/packages/simulation.scm=0D=0A+++ b/gnu/packages/simulation.scm=0D=0A=
@@ -197,8 +197,10 @@ (define-public openfoam-org=0D=0A ;; Executabl=
e files and shared libraries are located in the 'platforms'=0D=0A ;=
; subdirectory.=0D=0A #:strip-directories=0D=0A- #~(list "shar=
e/OpenFOAM/platforms/linux64GccDPInt32Opt/bin"=0D=0A- "share=
/OpenFOAM/platforms/linux64GccDPInt32Opt/lib")=0D=0A+ #~(list (strin=
g-append "OpenFOAM-" #$(package-version this-package)=0D=0A+ =
"/platforms/linux64GccDPInt32Opt/bin")=0D=0A+=09 (st=
ring-append "OpenFOAM-" #$(package-version this-package)=0D=0A+ =
"/platforms/linux64GccDPInt32Opt/lib"))=0D=0A=20=0D=0A=
#:modules=0D=0A '((ice-9 ftw)=0D=0A@@ -278,7 +280,9 @@ (defi=
ne-public openfoam-org=0D=0A =
"/lib,")) "" libraries))=0D=0A (openfoa=
m-lib=0D=0A (string-append #$output=0D=0A- =
"/share/OpenFOAM/platforms/linux64GccDP=
Int32Opt/lib"))=0D=0A+ "/share/Ope=
nFOAM-"=0D=0A+ #$(package-version =
this-package)=0D=0A+ "/platforms/l=
inux64GccDPInt32Opt/lib"))=0D=0A (ldflags=0D=0A =
(string-append "-Wl,"=0D=0A =
rpaths=0D=0A@@ -338,19 +342,32 @@ (define-public openf=
oam-org=0D=0A ;; (with-directory-excursion "tutorials"=0D=
=0A ;; (invoke "bash" "-c" "source ../etc/bashrc && ./All=
test"))=0D=0A ) #t))=0D=0A+ (add-before 'install=
'set-paths=0D=0A+ (lambda _=0D=0A+ (let ((instal=
l-path (string-append #$output=0D=0A+=09=09=09=09 "/share=
/OpenFOAM-"=0D=0A+ #$(pac=
kage-version this-package))))=0D=0A+ (substitute* "etc/bas=
hrc"=0D=0A+=09 (("^\\[ \"\\$BASH\".*$") "")=0D=0A+=09 (=
("^export FOAM_INST_DIR=3D\\$\\(cd.*$")=0D=0A+=09 (string-appen=
d "export FOAM_INST_DIR=3D" install-path "\n"))=0D=0A+=09 (("^ex=
port FOAM_INST_DIR=3D\\$HOME.*$") ""))) #t))=0D=0A (replace 'in=
stall=0D=0A (lambda _=0D=0A- (let ((install-dir =
(string-append #$output=0D=0A- =
"/share/OpenFOAM")))=0D=0A- (mkdir-p install-dir) ;cr=
eate install directory=0D=0A+ (let ((install-path (string-ap=
pend #$output=0D=0A+ "/sh=
are/OpenFOAM-"=0D=0A+ #$(=
package-version this-package))))=0D=0A+ (mkdir-p install-p=
ath) ;create install directory=0D=0A ;; move contents of =
build directory to install directory=0D=0A- (copy-recursiv=
ely "." install-dir))))=0D=0A+ (copy-recursively "." insta=
ll-path))))=0D=0A (add-after 'install 'add-symbolic-link=0D=0A =
(lambda _=0D=0A (let* ((bin (string-append #$ou=
tput "/bin"))=0D=0A (lib (string-append #$output "/l=
ib"))=0D=0A+ (etc (string-append #$output "/etc"))=0D=
=0A (openfoam (string-append #$output=0D=0A- =
"/share/OpenFOAM"))=0D=0A+ =
"/share/OpenFOAM-"=0D=0A+ =
#$(package-version this-package)))=0D=0A=
(build-bin (string-append openfoam=0D=0A =
"/platforms/linux64GccDPInt32Opt/bin=
"))=0D=0A (build-lib (string-append openfoam=0D=0A@@=
-373,12 +390,24 @@ (define-public openfoam-org=0D=0A =
(string-append bin "/" file))))=0D=0A =
(scandir foam-bin))=0D=0A ;; add symbolic link=
for standard 'lib' directory=0D=0A- (symlink build-lib li=
b)) #t)))))=0D=0A- (native-search-paths=0D=0A- (list (search-path-=
specification=0D=0A- (variable "WM_PROJECT_DIR")=0D=0A- =
(separator #f)=0D=0A- (files '("share/OpenFOAM")))))=0D=0A=
+ (symlink build-lib lib)=0D=0A+ ;; add sym=
bolic link for bashrc file=0D=0A+ (mkdir-p etc)=0D=0A+ =
(symlink (string-append openfoam "/etc/bashrc")=0D=0A+ =
(string-append etc "/bashrc"))) #t))=0D=0A+ (a=
dd-after 'add-symbolic-link 'wrap=0D=0A+ (lambda* (#:key pytho=
n inputs outputs #:allow-other-keys)=0D=0A+ (let* ((bin (str=
ing-append #$output "/bin"))=0D=0A+ (openfoam (string=
-append #$output=0D=0A+ "/sh=
are/OpenFOAM-"=0D=0A+ #$(pac=
kage-version this-package))))=0D=0A+ (for-each=0D=0A+ =
(lambda (program)=0D=0A+ (unless (member pr=
ogram=0D=0A+ '("." ".."))=0D=0A+ =
(wrap-program (string-append bin "/" program)=0D=0A+ =
`("WM_PROJECT_DIR" ":" prefix (,openfoam)))))=0D=0A+ =
(scandir bin))))))))=0D=0A ;; Note:=0D=0A ;; Tutorial=
files are installed read-only in /gnu/store.=0D=0A ;; To allow write=
permissions on files copied from the store a=0D=0A--=20=0D=0A2.41.0=0D=0A=
=0D=0A
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH v4 2/6] gnu: openfoam-org: Refactor dependency.
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* gnu/packages/simulation.scm (openfoam-org): Move dependency paraview to=
from=0D=0Anative-inputs to propagated-inputs.=0D=0A=0D=0AChange-Id: I64c=
53b3554acc3d7390c88bbf2bcbcac98cdc141=0D=0A---=0D=0A gnu/packages/simulat=
ion.scm | 3 +--=0D=0A 1 file changed, 1 insertion(+), 2 deletions(-)=0D=0A=
=0D=0Adiff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.=
scm=0D=0Aindex cb6f07c383..73e53fe35f 100644=0D=0A--- a/gnu/packages/simu=
lation.scm=0D=0A+++ b/gnu/packages/simulation.scm=0D=0A@@ -143,7 +143,6 @=
@ (define-public openfoam-org=0D=0A ncurses=0D=0A =
openmpi=0D=0A openssh=0D=0A- =
paraview=0D=0A pt-scotch32=0D=0A =
readline=0D=0A zlib))=0D=0A@@ -190,7 +189,7 @@ (define-=
public openfoam-org=0D=0A utfcpp=0D=0A =
vtk=0D=0A xz))=0D=0A- (propag=
ated-inputs (list gnuplot))=0D=0A+ (propagated-inputs (list paraview g=
nuplot))=0D=0A (outputs '("debug" ;~60MB=0D=0A "out"))=
=0D=0A (arguments=0D=0A--=20=0D=0A2.41.0=0D=0A=0D=0A
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH v4 1/6] gnu: openfoam-org: Use gexps.
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* gnu/packages/simulation.scm (openfoam-org): Use gexps, other cosmetic c=
hanges.=0D=0A=0D=0AChange-Id: I856d9660559cb4656251cba6bc5dd31d004f1b74=0D=
=0A---=0D=0A gnu/packages/simulation.scm | 32 ++++++++++++---------------=
-----=0D=0A 1 file changed, 12 insertions(+), 20 deletions(-)=0D=0A=0D=0A=
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm=0D=
=0Aindex b2fb123815..cb6f07c383 100644=0D=0A--- a/gnu/packages/simulation=
=2Escm=0D=0A+++ b/gnu/packages/simulation.scm=0D=0A@@ -238,13 +238,10 @@ =
(define-public openfoam-org=0D=0A (string-append "export=
SCOTCH_VERSION=3Dscotch_"=0D=0A #$(packa=
ge-version pt-scotch32) "\n"))=0D=0A (("^export SCOTCH_AR=
CH_PATH=3D.*$")=0D=0A- (string-append "export SCOTCH_ARCH=
_PATH=3D"=0D=0A- (assoc-ref %build-inputs =
"pt-scotch32")=0D=0A- "\n"))) #t))=0D=0A+ =
(string-append "export SCOTCH_ARCH_PATH=3D" #$pt-scotch32=
"\n"))) #t))=0D=0A (add-before 'build 'patch-mpi=0D=0A =
(lambda _=0D=0A- (let* ((mpi-path (assoc-ref %build-inp=
uts "openmpi"))=0D=0A- (mpi-version #$(package-versio=
n openmpi)))=0D=0A+ (let* ((mpi-version #$(package-version o=
penmpi)))=0D=0A ;; specify openmpi type=0D=0A =
(substitute* "etc/bashrc"=0D=0A (("WM_MPLIB=3DSYST=
EMOPENMPI")=0D=0A@@ -254,8 +251,7 @@ (define-public openfoam-org=0D=0A =
(string-append "export FOAM_MPI=3Dopenmpi-"=0D=0A =
mpi-version "\n"))=0D=0A ((=
"export MPI_ARCH_PATH=3D.*\\$FOAM_MPI.*$")=0D=0A- (stri=
ng-append "export MPI_ARCH_PATH=3D" mpi-path=0D=0A- =
"\n")))) #t))=0D=0A+ (string-append "export=
MPI_ARCH_PATH=3D" #$openmpi "\n")))) #t))=0D=0A (add-before 'b=
uild 'patch-paraview=0D=0A (lambda _=0D=0A (sub=
stitute* "etc/config.sh/paraview"=0D=0A@@ -263,12 +259,11 @@ (define-publ=
ic openfoam-org=0D=0A (string-append "export ParaView_VE=
RSION=3D"=0D=0A #$(package-version paravi=
ew) "\n"))=0D=0A (("^export ParaView_DIR=3D.*$")=0D=0A- =
(string-append "export ParaView_DIR=3D"=0D=0A- =
(assoc-ref %build-inputs "paraview")=0D=0A- =
"\n"))) #t))=0D=0A+ (string-append =
"export ParaView_DIR=3D" #$paraview "\n"))) #t))=0D=0A (add-bef=
ore 'build 'add-rpaths=0D=0A (lambda _=0D=0A- (l=
etrec* ((libraries '("boost" "cgal"=0D=0A+ (letrec* ((librar=
ies '("boost"=0D=0A+ "cgal"=0D=0A =
"gmp"=0D=0A =
"metis"=0D=0A "mpfr"=0D=0A=
@@ -277,11 +272,10 @@ (define-public openfoam-org=0D=0A =
"zlib"=0D=0A "pa=
raview"))=0D=0A (rpaths=0D=0A- =
(fold-right (lambda (library rpaths)=0D=0A+ =
(fold-right (lambda (lib rpaths)=0D=0A =
(string-append rpaths=0D=0A =
"-rpath=3D"=0D=0A- =
(assoc-ref=0D=0A- =
%build-inputs library)=0D=0A+ =
(assoc-ref %build-inputs lib)=0D=0A =
"/lib,")) "" libraries))=0D=0A =
(openfoam-lib=0D=0A (strin=
g-append #$output=0D=0A@@ -307,13 +301,11 @@ (define-public openfoam-org=0D=
=0A (lambda _=0D=0A (let* ((vtk-version #$(vers=
ion-major+minor=0D=0A (package-versi=
on vtk)))=0D=0A- (vtk-root (assoc-ref %build-inputs "=
vtk"))=0D=0A- (vtk-inc (string-append vtk-root "/incl=
ude/vtk-" vtk-version))=0D=0A+ (vtk-inc (string-appen=
d #$vtk "/include/vtk-" vtk-version))=0D=0A (vtk-inc=
-flag (string-append "-I" vtk-inc)))=0D=0A (substitute* "=
wmake/rules/linux64Gcc/c++"=0D=0A (("\\$\\(LIB_HEADER_D=
IRS\\)" all)=0D=0A- (string-append all " " vtk-inc-flag=
" "))))=0D=0A- #t))=0D=0A+ (string-append=
all " " vtk-inc-flag " ")))) #t))=0D=0A (delete 'configure) ;n=
o configure phase=0D=0A (replace 'build=0D=0A (lamb=
da _=0D=0A@@ -400,6 +392,7 @@ (define-public openfoam-org=0D=0A ;; $ =
cd pitzDaily=0D=0A ;; $ chmod -R u+w .=0D=0A ;; $ blockMesh=0D=0A=
+ (home-page "https://openfoam.org")=0D=0A (synopsis "Framework fo=
r numerical simulation of fluid flow")=0D=0A (description=0D=0A =
"OpenFOAM provides a set of solvers and methods for tackling=0D=0A@@ -410=
,8 +403,7 @@ (define-public openfoam-org=0D=0A sharp gradients, such as t=
hose encountered in flows with shock waves and flows=0D=0A with gas/liqui=
d interfaces. Large problems may be split into smaller, connected=0D=0A =
problems for efficient solution on parallel systems.")=0D=0A- (license=
license:gpl3+)=0D=0A- (home-page "https://openfoam.org")))=0D=0A+ =
(license license:gpl3+)))=0D=0A=20=0D=0A (define-public openfoam=0D=0A =
(deprecated-package "openfoam" openfoam-org))=0D=0A=0D=0Abase-commit: e43=
97a32ac81d0b23b168df27424001a7d20aee7=0D=0A--=20=0D=0A2.41.0=0D=0A=0D=0A
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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> >> Making openfoam have LD_LIBRARY_PATH as a search path seems like the >> incorrect use of search paths though, since you're searching for >> something in the same package=2E Replacing this with wrapping would be = an >> improvement, although still I'm unsure why LD_LIBRARY_PATH would need >> setting in this case >Hmm maybe you are right, will try to wrap the binaries instead=2E=2E=2E I removed the search-path but it still fails to build, I cannot make sense= of the error message=2E=2E=2E
guix-patches@HIDDEN:bug#66262; Package guix-patches.
Full text available.Received: (at 66262) by debbugs.gnu.org; 10 Oct 2023 17:09:56 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Tue Oct 10 13:09:56 2023 Received: from localhost ([127.0.0.1]:36836 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1qqGF1-0000qi-Rl for submit <at> debbugs.gnu.org; Tue, 10 Oct 2023 13:09:56 -0400 Received: from mira.cbaines.net ([2a01:7e00:e000:2f8:fd4d:b5c7:13fb:3d27]:44619) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <mail@HIDDEN>) id 1qqGEz-0000qX-8L for 66262 <at> debbugs.gnu.org; Tue, 10 Oct 2023 13:09:53 -0400 Received: from localhost (unknown [217.155.61.229]) by mira.cbaines.net (Postfix) with ESMTPSA id 5F0C427BBE2; Tue, 10 Oct 2023 18:09:31 +0100 (BST) Received: from felis (localhost [127.0.0.1]) by localhost (OpenSMTPD) with ESMTP id ca7deb98; Tue, 10 Oct 2023 17:09:30 +0000 (UTC) References: <03D1B03C-320E-4722-80BC-D35CB0DBDBA3@HIDDEN> <87cyxth2jp.fsf@HIDDEN> <FDFE0A4D-3301-427F-A7D5-225BD55BD225@HIDDEN> <87zg0weyde.fsf@HIDDEN> <2c3bb152-6928-cdcd-a8b6-593218a6d4e9@HIDDEN> User-agent: mu4e 1.10.5; emacs 28.2 From: Christopher Baines <mail@HIDDEN> To: Reza Housseini <reza.housseini@HIDDEN> Subject: Re: Failed to build in QA Date: Tue, 10 Oct 2023 18:09:04 +0100 In-reply-to: <2c3bb152-6928-cdcd-a8b6-593218a6d4e9@HIDDEN> Message-ID: <87edi2flpx.fsf@HIDDEN> MIME-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha512; protocol="application/pgp-signature" X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 66262 Cc: guix-devel@HIDDEN, 66262 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) --=-=-= Content-Type: text/plain Reza Housseini <reza.housseini@HIDDEN> writes: >> This is probably down to a top level circular dependency. In particular, >> trying to paraview to compute the version to form part of the >> native-search-path at the top level causes problems. > > I'm wondering why it builds fine locally but causes problems in QA > have you any pointers what might be the difference? You should be able to reproduce this locally, I see the issue when running make. --=-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQKlBAEBCgCPFiEEPonu50WOcg2XVOCyXiijOwuE9XcFAmUlhUpfFIAAAAAALgAo aXNzdWVyLWZwckBub3RhdGlvbnMub3BlbnBncC5maWZ0aGhvcnNlbWFuLm5ldDNF ODlFRUU3NDU4RTcyMEQ5NzU0RTBCMjVFMjhBMzNCMEI4NEY1NzcRHG1haWxAY2Jh aW5lcy5uZXQACgkQXiijOwuE9Xfq2w/+MlKd4WBODRfYQujdjPHausMsBbAzXkUc YobqirURl5x1DEY8U3b2YT3SOtPTREHxAtSoSRvMCv/zfwMhn2G5p1LkCOQAaNtn zez6+Je7I2S1udmRfN/8jjA4aajR8vAixgkSKBGE93pAn2Le7SYjw5moxAeGgCBT 2nBimxoK/HJJ15n9D9E3TwQN0jh/mS22MYy6vKE53Hy2NGbwldkh+XsDYWVNfEhJ iYJ3mwdAiPY8tQJdDS88FFq99jpe+XA4ruC/WuNWpEc/6ZK9uzc5EGzXVgklFNyF n5tQ5BV18jHJv/bhLHi2wnbGbzKPIDuwvJJM9s4HGFQy5Vc/ZFjwN2+jcvToSQqU Q6YhNyvaPnt2IPo13TFAPu34pRldvQpIjLOMmOVMxtk3AdXlM5521susiZ0NSQaN 2VlpN/E0BCDY89SSjpCGamVEVjaRCEp5XQzh38Ma6akXvNDawdeEU9vAHCgs9gcY Q9mmb4r3FKTorEVai3mtYWqZbtozHllZp2lGmVwSHAKQ3gavtYzDxF2KVs28b9DY jreymmEQWCJ+3VV62PW9Ad1lPExDFyOwgNZA8hyq8XJIOfwFzQAPXlINs5Z/jJTH bjFUuzE3538sW1L4I5beeGVROcnPBVqE39loqSGD9XM/UJDWFOQ0dH5SBk5Y8HR4 oX4MY/KlHZQ= =GapC -----END PGP SIGNATURE----- --=-=-=--
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH v3 3/3] gnu: openfoam-com: Update to 2306.
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* gnu/packages/simulation (openfoam-com): Update to 2306. Use openfoam-pa=
ckage=0D=0Afactory function to create package.=0D=0A---=0D=0A gnu/package=
s/simulation.scm | 58 +++++++++++++++++++------------------=0D=0A 1 file =
changed, 30 insertions(+), 28 deletions(-)=0D=0A=0D=0Adiff --git a/gnu/pa=
ckages/simulation.scm b/gnu/packages/simulation.scm=0D=0Aindex 6ce15a2c2d=
=2E.f44e1dbf6f 100644=0D=0A--- a/gnu/packages/simulation.scm=0D=0A+++ b/g=
nu/packages/simulation.scm=0D=0A@@ -429,37 +429,39 @@ (define-public open=
foam=0D=0A=20=0D=0A (define-public openfoam-com=0D=0A ;; This is a fork=
of 'openfoam-org', maintained separately.=0D=0A- (package=0D=0A- (in=
herit openfoam-org)=0D=0A- (name "openfoam-com")=0D=0A- (version "2=
212")=0D=0A- (source (origin=0D=0A- (method url-fetch)=0D=
=0A- (uri (string-append "https://develop.openfoam.com"=0D=0A=
- "/Development/openfoam/-/archive/OpenF=
OAM-v"=0D=0A- version=0D=0A- =
"/openfoam-OpenFOAM-v"=0D=0A- =
version=0D=0A- ".tar.gz"))=0D=
=0A- (sha256=0D=0A- (base32=0D=0A- =
"0i9039hfz9gvgymkdjhjvvn5500zha3cpdbpqrzfrfi8lbz10is2"))=0D=0A- =
(modules '((guix build utils)))=0D=0A- (snippet `(be=
gin=0D=0A- (substitute* "etc/bashrc"=0D=0A- =
;; set same version as guix package=0D=0A-=09=09=09=
(("^export WM_PROJECT_VERSION=3D.*$")=0D=0A-=09=09=09 (string-app=
end "export WM_PROJECT_VERSION=3D"=0D=0A-=09=09=09=09=09 ,version "\n"=
)))=0D=0A- ;; patch shell paths=0D=0A- =
(substitute* (list "src/OSspecific/POSIX/POSIX.C"=0D=0A+ =
(let* ((version "2306")=0D=0A+ (name "openfoam-com")=0D=0A+ =
(source (origin=0D=0A+ (method url-fetch)=0D=0A+ =
(uri (string-append "https://develop.openfoam.com"=0D=0A+=
"/Development/openfoam/-/archive/O=
penFOAM-v"=0D=0A+ version=0D=0A+ =
"/openfoam-OpenFOAM-v"=0D=0A+ =
version=0D=0A+ =
".tar.gz"))=0D=0A+ (sha256 (base32=0D=0A+ =
"0zlkp48vygl2a5cyl0mfpj8dsb5bffviq96rg3kws1l6ni4=
0v7jr"))=0D=0A+ (modules '((guix build utils)))=0D=0A+ =
(snippet `(begin=0D=0A+ (=
substitute* "etc/bashrc"=0D=0A+ ;; set sa=
me version as guix package=0D=0A+ (("^exp=
ort WM_PROJECT_VERSION=3D.*$")=0D=0A+ (s=
tring-append "export WM_PROJECT_VERSION=3D"=0D=0A+ =
,version "\n")))=0D=0A+ =
;; patch shell paths=0D=0A+ (substit=
ute* (list=0D=0A+ "src/OSspec=
ific/POSIX/POSIX.C"=0D=0A "w=
make/src/Makefile"=0D=0A "wm=
ake/makefiles/general"=0D=0A =
"wmake/makefiles/info")=0D=0A- (("/bin/sh")=0D=
=0A- "sh"))))))=0D=0A- (synopsis "Framewor=
k for numerical simulation of fluid flow (from openfoam.com)")=0D=0A- =
(home-page "https://www.openfoam.com")))=0D=0A+ =
(("/bin/sh")=0D=0A+ "sh"))))))=0D=
=0A+ (home-page "https://www.openfoam.com")=0D=0A+ (synop=
sis=0D=0A+ "Framework for numerical simulation of fluid flow (fr=
om openfoam.com)")=0D=0A+ (template (openfoam-package source vers=
ion name home-page synopsis)))=0D=0A+ (package=0D=0A+ (inherit te=
mplate))))=0D=0A=20=0D=0A (define-public open-simulation-interface=0D=0A =
(package=0D=0A--=20=0D=0A2.41.0=0D=0A=0D=0A
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Subject: [PATCH v3 1/3] gnu: Add openfoam-package.
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* gnu/packages/simulation.scm (openfoam-package): Add factory function to=
=0D=0Agenerate openfoam packages. Improve build tree clean up to fix repr=
oducibility=0D=0Abug. Fix install path to follow openfoam naming conventi=
on.=0D=0A---=0D=0A gnu/packages/simulation.scm | 285 ++++++++++++++++++++=
++++++++++++++++=0D=0A 1 file changed, 285 insertions(+)=0D=0A=0D=0Adiff =
--git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm=0D=0Ain=
dex b2fb123815..4b95688e33 100644=0D=0A--- a/gnu/packages/simulation.scm=0D=
=0A+++ b/gnu/packages/simulation.scm=0D=0A@@ -88,6 +88,291 @@ (define-mod=
ule (gnu packages simulation)=0D=0A #:use-module (ice-9 regex)=0D=0A =
#:use-module (srfi srfi-1))=0D=0A=20=0D=0A+(define* (openfoam-package sou=
rce version name home-page synopsis)=0D=0A+ (let* ((install-path (string=
-append "share/OpenFOAM-" version)))=0D=0A+ (package=0D=0A+ (name=
name)=0D=0A+ (version version)=0D=0A+ (source source)=0D=0A+ =
(build-system gnu-build-system)=0D=0A+ (native-search-paths=0D=0A=
+ (list (search-path-specification=0D=0A+=09 (variable "WM_PRO=
JECT_DIR")=0D=0A+=09 (files `(,install-path)))))=0D=0A+ (inputs=
(list boost=0D=0A+=09=09 cgal=0D=0A+=09=09 git=0D=0A+=09=09 gmp=
=0D=0A+=09=09 libxt=0D=0A+=09=09 metis=0D=0A+=09=09 mpfr=0D=0A+=09=
=09 ncurses=0D=0A+=09=09 openmpi=0D=0A+=09=09 openssh=0D=0A+=09=09=
paraview=0D=0A+=09=09 pt-scotch32=0D=0A+=09=09 readline=0D=0A+=09=
=09 scotch=0D=0A+=09=09 zlib))=0D=0A+ (native-inputs (list bis=
on=0D=0A+=09=09 flex=0D=0A+=09=09 ;; paraview plugin =
dependencies=0D=0A+=09=09 cli11=0D=0A+=09=09 cmake-mi=
nimal=0D=0A+=09=09 cgns=0D=0A+=09=09 curl=0D=0A+=09=09=
double-conversion=0D=0A+=09=09 eigen=0D=0A+=09=09 =
expat=0D=0A+=09=09 ffmpeg=0D=0A+=09=09 fmt=0D=
=0A+=09=09 freetype=0D=0A+=09=09 gdal=0D=0A+=09=09 =
gl2ps=0D=0A+=09=09 glew=0D=0A+=09=09 gmsh=0D=0A=
+=09=09 hdf5=0D=0A+=09=09 jsoncpp=0D=0A+=09=09 =
libjpeg-turbo=0D=0A+=09=09 libogg=0D=0A+=09=09 li=
bpng=0D=0A+=09=09 libharu=0D=0A+=09=09 libtheora=0D=0A=
+=09=09 libtiff=0D=0A+=09=09 libx11=0D=0A+=09=09 =
libxml2=0D=0A+=09=09 lz4=0D=0A+=09=09 netcdf=0D=
=0A+=09=09 nlohmann-json=0D=0A+=09=09 proj=0D=0A+=09=09=
protobuf=0D=0A+=09=09 pugixml=0D=0A+=09=09 =
python=0D=0A+=09=09 python-mpi4py=0D=0A+=09=09 qtbas=
e-5=0D=0A+=09=09 qtsvg-5=0D=0A+=09=09 qttools-5=0D=0A=
+=09=09 qtwebengine-5=0D=0A+=09=09 qtxmlpatterns=0D=0A=
+=09=09 utfcpp=0D=0A+=09=09 vtk=0D=0A+=09=09 =
xz))=0D=0A+ (propagated-inputs (list gnuplot))=0D=0A+ (output=
s '("debug" ;~60MB=0D=0A+=09 "out"))=0D=0A+ (arguments=0D=0A=
+ (list=0D=0A+ ;; Executable files and shared libraries are =
located in the 'platforms'=0D=0A+ ;; subdirectory.=0D=0A+ #=
:strip-directories=0D=0A+ #~(list (string-append "OpenFOAM-" #$ver=
sion "/platforms/linux64GccDPInt32Opt/bin")=0D=0A+=09 (string-appe=
nd "OpenFOAM-" #$version "/platforms/linux64GccDPInt32Opt/lib"))=0D=0A+=0D=
=0A+ #:modules=0D=0A+ '((ice-9 ftw)=0D=0A+ (ice-9 =
regex)=0D=0A+ (ice-9 string-fun)=0D=0A+ (srfi srfi-1)=0D=
=0A+ (guix build gnu-build-system)=0D=0A+ (guix build u=
tils))=0D=0A+=0D=0A+ #:phases=0D=0A+ #~(modify-phases %stan=
dard-phases=0D=0A+=09 (add-before 'build 'patch-HOME-path=0D=0A+=09 =
(lambda _=0D=0A+=09 (setenv "HOME" "/tmp") #t))=0D=0A+=09 (a=
dd-before 'build 'patch-scotch=0D=0A+=09 (lambda _=0D=0A+=09 =
(substitute* "etc/config.sh/scotch"=0D=0A+=09 (("^export SCOTCH_=
VERSION=3Dscotch_.*$")=0D=0A+=09 (string-append "export SCOTCH_=
VERSION=3Dscotch_"=0D=0A+=09=09=09 #$(package-version pt-scotch3=
2) "\n"))=0D=0A+=09 (("^export SCOTCH_ARCH_PATH=3D.*$")=0D=0A+=09=
(string-append "export SCOTCH_ARCH_PATH=3D" #$pt-scotch32 "\n"=
)))=0D=0A+=09 #t))=0D=0A+=09 (add-before 'build 'patch-mpi=0D=0A=
+=09 (lambda _=0D=0A+=09 (let* ((mpi-version #$(package-versi=
on openmpi)))=0D=0A+=09 ;; specify openmpi type=0D=0A+=09 =
(substitute* "etc/bashrc"=0D=0A+=09=09 (("WM_MPLIB=3DSYSTEMOPENMPI"=
)=0D=0A+=09=09 "WM_MPLIB=3DOPENMPI"))=0D=0A+=09 (substitute*=
"etc/config.sh/mpi"=0D=0A+=09=09 (("export FOAM_MPI=3Dopenmpi-.*$")=0D=
=0A+=09=09 (string-append "export FOAM_MPI=3Dopenmpi-"=0D=0A+=09=09=09=
=09 mpi-version "\n"))=0D=0A+=09=09 (("export MPI_ARCH_PATH=3D.*\\$=
FOAM_MPI.*$")=0D=0A+=09=09 (string-append "export MPI_ARCH_PATH=3D" #=
$openmpi "\n"))))=0D=0A+=09 #t))=0D=0A+=09 (add-before 'build '=
patch-paraview=0D=0A+=09 (lambda _=0D=0A+=09 (substitute* "et=
c/config.sh/paraview"=0D=0A+=09 (("^export ParaView_VERSION=3D.*=
$")=0D=0A+=09 (string-append "export ParaView_VERSION=3D"=0D=0A=
+=09=09=09 #$(package-version paraview) "\n"))=0D=0A+=09 =
(("^export ParaView_DIR=3D.*$")=0D=0A+=09 (string-append "exp=
ort ParaView_DIR=3D" #$paraview "\n"))=0D=0A+ (("export =
ParaView_GL=3Dmesa") "export ParaView_GL=3Dsystem"))=0D=0A+=09 #t)=
)=0D=0A+=09 (add-before 'build 'add-rpaths=0D=0A+=09 (lambda _=0D=
=0A+=09 (letrec* ((libraries '("boost"=0D=0A+=09=09=09=09 "c=
gal"=0D=0A+=09=09=09=09 "gmp"=0D=0A+=09=09=09=09 "metis"=0D=0A=
+=09=09=09=09 "mpfr"=0D=0A+=09=09=09=09 "scotch"=0D=0A+=09=09=
=09=09 "pt-scotch32"=0D=0A+ =09=09=09=09 "openmpi"=0D=0A+=09=09=
=09=09 "zlib"=0D=0A+=09=09=09=09 "paraview"))=0D=0A+=09=09 =
(rpaths=0D=0A+=09=09 (fold-right (lambda (lib rpaths)=0D=
=0A+=09=09=09=09 (string-append rpaths=0D=0A+=09=09=09=09=09=09 =
"-rpath=3D"=0D=0A+=09=09=09=09=09=09 (assoc-ref %build-input=
s lib)=0D=0A+=09=09=09=09=09=09 "/lib,")) "" libraries))=0D=0A+=09=
=09 (openfoam-lib=0D=0A+=09=09 (string-append #$output=
=0D=0A+=09=09=09=09 "/share/OpenFOAM-" #$version=0D=0A+=09=09=09=
=09 "/platforms/linux64GccDPInt32Opt/lib"))=0D=0A+=09=09 =
(ldflags=0D=0A+=09=09 (string-append "-Wl,"=0D=0A+=09=09=09=09=
rpaths=0D=0A+=09=09=09=09 "-rpath=3D"=0D=0A+=09=09=09=09=
openfoam-lib=0D=0A+=09=09=09=09 ","=0D=0A+=09=09=09=09=
"-rpath=3D"=0D=0A+=09=09=09=09 openfoam-lib=0D=0A+=09=09=
=09=09 "/dummy,"=0D=0A+=09=09=09=09 "-rpath=3D"=0D=0A+=09=
=09=09=09 openfoam-lib=0D=0A+=09=09=09=09 "/paraview-"=0D=
=0A+=09=09=09=09 #$(version-major+minor (package-version=0D=0A+=09=
=09=09=09=09=09=09 paraview)))))=0D=0A+=09 (substitute*=
"wmake/rules/linux64Gcc/c++"=0D=0A+=09=09 (("\\$\\(LIB_HEADER_DIRS\\)=
-fPIC" all)=0D=0A+=09=09 (string-append all " " ldflags)))) #t))=0D=0A=
+=09 (add-before 'build 'add-vtk-include-path=0D=0A+=09 (lambda _=
=0D=0A+=09 (let* ((vtk-version #$(version-major+minor=0D=0A+=09=09=
=09=09 (package-version vtk)))=0D=0A+=09=09 (vtk-inc (string-=
append #$vtk "/include/vtk-" vtk-version))=0D=0A+=09=09 (vtk-inc-fl=
ag (string-append "-I" vtk-inc)))=0D=0A+=09 (substitute* "wmake/=
rules/linux64Gcc/c++"=0D=0A+=09=09 (("\\$\\(LIB_HEADER_DIRS\\)" all)=0D=
=0A+=09=09 (string-append all " " vtk-inc-flag " "))))=0D=0A+=09 =
#t))=0D=0A+=09 (delete 'configure) ;no configure phase=0D=0A+=09 =
(replace 'build=0D=0A+=09 (lambda _=0D=0A+=09 ;; compile Ope=
nFOAM libraries and applications=0D=0A+=09 (invoke "bash" "-c"=0D=0A=
+=09=09 (format #f=0D=0A+=09=09=09 "source ./etc/bashrc && =
=2E/Allwmake -j~a"=0D=0A+=09=09=09 (parallel-job-count)))))=0D=0A+=
=09 (add-after 'build 'cleanup=0D=0A+=09 ;; Avoid unnecessary, vo=
luminous object and dep files.=0D=0A+=09 (lambda _=0D=0A+=09 =
(when (file-exists=3F "platforms/linux64GccDPInt32Opt/src")=0D=0A+=09 =
(delete-file-recursively=0D=0A+=09 "platforms/linux64GccD=
PInt32Opt/src"))=0D=0A+=09 (when (file-exists=3F=0D=0A+=09=09 =
"platforms/linux64GccDPInt32OptOPENMPI")=0D=0A+=09 (delete-fil=
e-recursively=0D=0A+=09 "platforms/linux64GccDPInt32OptOPENMPI"=
))=0D=0A+=09 (for-each delete-file=0D=0A+=09=09 (find-fil=
es "." "\\.o$"))=0D=0A+ ;; Remove spurious files in src tr=
ee=0D=0A+ (invoke "bash" "-c" "source ./etc/bashrc && wcle=
an all")=0D=0A+ #t))=0D=0A+=09 (replace 'check=0D=0A+=09=
(lambda* (#:key tests=3F #:allow-other-keys)=0D=0A+=09 (when=
tests=3F=0D=0A+=09 (when (file-exists=3F "test")=0D=0A+=09=09 =
(with-directory-excursion "test"=0D=0A+=09=09 (invoke "bash" "-c"=0D=
=0A+=09=09=09 (format #f=0D=0A+=09=09=09=09 "source ../etc/bash=
rc && ./Allrun -j~a"=0D=0A+=09=09=09=09 (parallel-job-count)))=0D=0A=
+ ;; cleanup=0D=0A+ (invoke "ba=
sh" "-c"=0D=0A+=09=09=09 "source ../etc/bashrc && ./Allclean")))=0D=0A=
+=09 ;; too many tutorials are failing=0D=0A+=09 ;; (wi=
th-directory-excursion "tutorials"=0D=0A+=09 ;; (invoke "bash" "=
-c" "source ../etc/bashrc && ./Alltest"))=0D=0A+=09 ) #t))=0D=0A=
+=09 (add-before 'install 'set-paths=0D=0A+=09 (lambda _=0D=0A+=09=
(let ((install-path (string-append #$output=0D=0A+=09=09=09=09=09=
"/share/OpenFOAM-" #$version)))=0D=0A+=09 (substitute=
* "etc/bashrc"=0D=0A+=09=09 (("^\\[ \"\\$BASH\".*$") "")=0D=0A+=09=09 =
(("^export FOAM_INST_DIR=3D\\$\\(cd.*$")=0D=0A+=09=09 (string-appe=
nd "export FOAM_INST_DIR=3D" install-path "\n"))=0D=0A+=09=09 (("^expo=
rt FOAM_INST_DIR=3D\\$HOME.*$") "")))=0D=0A+=09 #t))=0D=0A+=09 =
(replace 'install=0D=0A+=09 (lambda* (#:key outputs inputs #:allow-o=
ther-keys)=0D=0A+=09 (let ((install-path (string-append #$output=0D=
=0A+=09=09=09=09=09 "/share/OpenFOAM-" #$version)))=0D=0A+=09 =
(mkdir-p install-path) ;create install directory=0D=0A+=09 =
;; move contents of build directory to install directory=0D=0A+=09 =
(copy-recursively "." install-path))))=0D=0A+=09 (add-after 'ins=
tall 'add-symbolic-link=0D=0A+=09 (lambda _=0D=0A+=09 (let* (=
(bin (string-append #$output "/bin"))=0D=0A+=09=09 (lib (string-app=
end #$output "/lib"))=0D=0A+=09=09 (openfoam (string-append #$outpu=
t=0D=0A+=09=09=09=09=09 "/share/OpenFOAM-" #$version))=0D=0A+=09=09=
(build-bin (string-append openfoam=0D=0A+=09=09=09=09=09 "=
/platforms/linux64GccDPInt32Opt/bin"))=0D=0A+=09=09 (build-lib (str=
ing-append openfoam=0D=0A+=09=09=09=09=09 "/platforms/linux64GccD=
PInt32Opt/lib"))=0D=0A+=09=09 (foam-bin (string-append openfoam "/b=
in")))=0D=0A+=09 ;; add symbolic links in standard 'bin' directo=
ry=0D=0A+=09 (mkdir-p bin)=0D=0A+=09 (for-each (lambda =
(file)=0D=0A+=09=09=09 (unless (member file=0D=0A+=09=09=09=09=09 =
'("." ".."))=0D=0A+=09=09=09 (symlink (string-append build-bin =
"/"=0D=0A+=09=09=09=09=09=09 file)=0D=0A+=09=09=09=09 (str=
ing-append bin "/" file))))=0D=0A+=09=09=09 (scandir build-bin))=0D=0A=
+=09 (for-each (lambda (file)=0D=0A+=09=09=09 (unless (memb=
er file=0D=0A+=09=09=09=09=09 '("." ".."))=0D=0A+=09=09=09 (s=
ymlink (string-append foam-bin "/"=0D=0A+=09=09=09=09=09=09 file)=0D=
=0A+=09=09=09=09 (string-append bin "/" file))))=0D=0A+=09=09=09 =
(scandir foam-bin))=0D=0A+=09 ;; add symbolic link for standa=
rd 'lib' directory=0D=0A+=09 (symlink build-lib lib)) #t)))))=0D=
=0A+ ;; Note:=0D=0A+ ;; Tutorial files are installed read-only =
in /gnu/store.=0D=0A+ ;; To allow write permissions on files copied =
from the store a=0D=0A+ ;; 'chmod' step is needed before running the=
applications. For=0D=0A+ ;; example, from a user's login:=0D=0A+ =
;; $ source $WM_PROJECT_DIR/etc/bashrc=0D=0A+ ;; $ mkdir -p $FOA=
M_RUN=0D=0A+ ;; $ cd $FOAM_RUN=0D=0A+ ;; $ cp -r $FOAM_TUTORIAL=
S/incompressible/simpleFoam/pitzDaily .=0D=0A+ ;; $ cd pitzDaily=0D=0A=
+ ;; $ chmod -R u+w .=0D=0A+ ;; $ blockMesh=0D=0A+ (synops=
is synopsis)=0D=0A+ (description=0D=0A+ "OpenFOAM provides a s=
et of solvers and methods for tackling=0D=0A+problems in the field of Com=
putational Fluid Dynamics (CFD). It is written in=0D=0A+C++. Governing =
equations such as the Navier-Stokes equations can be solved in=0D=0A+inte=
gral form. Physical processes such as phase change, droplet transport an=
d=0D=0A+chemical reaction can be modelled. Numerical methods are include=
d to deal with=0D=0A+sharp gradients, such as those encountered in flows =
with shock waves and flows=0D=0A+with gas/liquid interfaces. Large probl=
ems may be split into smaller, connected=0D=0A+problems for efficient sol=
ution on parallel systems.")=0D=0A+ (license license:gpl3+)=0D=0A+ =
(home-page home-page))))=0D=0A+=0D=0A (define-public openfoam-org=0D=0A=
(package=0D=0A (name "openfoam-org")=0D=0A--=20=0D=0A2.41.0=0D=0A=0D=
=0A
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH v3 2/3] gnu: openfoam-org: Update to 11.
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* gnu/packages/simulation.scm (openfoam-org): Update to 11. Use=0D=0Aopen=
foam-package factory function to create package.=0D=0A---=0D=0A gnu/packa=
ges/simulation.scm | 372 +++++-------------------------------=0D=0A 1 fil=
e changed, 49 insertions(+), 323 deletions(-)=0D=0A=0D=0Adiff --git a/gnu=
/packages/simulation.scm b/gnu/packages/simulation.scm=0D=0Aindex 4b95688=
e33..6ce15a2c2d 100644=0D=0A--- a/gnu/packages/simulation.scm=0D=0A+++ b/=
gnu/packages/simulation.scm=0D=0A@@ -374,329 +374,55 @@ (define* (openfoa=
m-package source version name home-page synopsis)=0D=0A (home-page =
home-page))))=0D=0A=20=0D=0A (define-public openfoam-org=0D=0A- (package=
=0D=0A- (name "openfoam-org")=0D=0A- (version "10.20230119")=0D=0A-=
(source (origin=0D=0A- (method git-fetch)=0D=0A- =
(uri (git-reference=0D=0A- (url (string-append "=
https://github.com/OpenFOAM/OpenFOAM-"=0D=0A- =
(version-major version)))=0D=0A- (commit (=
second (string-split version #\.)))))=0D=0A- (sha256=0D=0A- =
(base32=0D=0A- "0icvwg7s6vnkgmdiczivia9pbrgx=
8nanw9a4j080fzfvdv9vxhzp"))=0D=0A- (file-name (git-file-name=
name version))=0D=0A- (modules '((guix build utils)))=0D=0A=
- (snippet `(begin=0D=0A- ;; patch =
shell paths=0D=0A- (substitute* (list "wmake/src=
/Makefile"=0D=0A- "wmake/make=
files/general")=0D=0A- (("/bin/sh")=0D=0A- =
"sh"))=0D=0A- (substitu=
te* "etc/bashrc"=0D=0A- ;; only go back one fo=
lder level=0D=0A- (("\\$\\(dirname \\$\\{BASH_=
SOURCE:-\\$0\\}\\)/../..")=0D=0A- "$(dirname =
${BASH_SOURCE:-$0})/..")=0D=0A- ;; do not use =
openfoam folder convention=0D=0A- (("^export W=
M_PROJECT_DIR=3D.*$")=0D=0A- (string-append=0D=
=0A- "export WM_PROJECT_DIR=3D$WM_PROJECT_IN=
ST_DIR\n"))=0D=0A- ;; do not source bash_compl=
etion (gives error)=0D=0A- (("^.*bash_completi=
on.*$" all)=0D=0A- (string-append "#" all))=0D=
=0A- ;; set same version as guix package=0D=0A=
- (("^export WM_PROJECT_VERSION=3D.*$")=0D=0A-=
(string-append "export WM_PROJECT_VERSION=3D=
"=0D=0A- ,version "\n")))=0D=0A=
- ;; add expand flag to RunFunctions=0D=0A- =
(substitute* "bin/tools/RunFunctions"=0D=0A- =
(("foamDictionary (.*)" all args)=0D=0A- =
(string-append "foamDictionary -expand " args)))=0D=0A- =
;; disable failing test=0D=0A- =
(substitute* "test/postProcessing/channel/Allrun"=0D=0A- =
(("^.*getApplication.*$" all)=0D=0A- =
(string-append "#" all "\n")))))))=0D=0A- (build-system gnu-=
build-system)=0D=0A- (inputs (list boost=0D=0A- cgal=0D=
=0A- git=0D=0A- gmp=0D=0A- =
libxt=0D=0A- metis=0D=0A- mpfr=0D=0A=
- ncurses=0D=0A- openmpi=0D=0A- =
openssh=0D=0A- paraview=0D=0A- =
pt-scotch32=0D=0A- readline=0D=0A- zl=
ib))=0D=0A- (native-inputs (list bison=0D=0A- =
flex=0D=0A- ;; paraview plugin dependencies=0D=0A=
- cli11=0D=0A- cmake-mini=
mal=0D=0A- cgns=0D=0A- cu=
rl=0D=0A- double-conversion=0D=0A- =
eigen=0D=0A- expat=0D=0A- =
ffmpeg=0D=0A- fmt=0D=0A- =
freetype=0D=0A- gdal=0D=0A- =
gl2ps=0D=0A- glew=0D=0A- =
gmsh=0D=0A- hdf5=0D=0A- =
jsoncpp=0D=0A- libjpeg-turbo=0D=0A- =
libogg=0D=0A- libpng=0D=0A=
- libharu=0D=0A- libtheor=
a=0D=0A- libtiff=0D=0A- l=
ibx11=0D=0A- libxml2=0D=0A- =
lz4=0D=0A- netcdf=0D=0A- =
nlohmann-json=0D=0A- proj=0D=0A- =
protobuf=0D=0A- pugixml=0D=0A- =
python=0D=0A- python-mpi4py=0D=0A=
- qtbase-5=0D=0A- qtsvg-5=
=0D=0A- qttools-5=0D=0A- =
qtwebengine-5=0D=0A- qtxmlpatterns=0D=0A- =
utfcpp=0D=0A- vtk=0D=0A- =
xz))=0D=0A- (propagated-inputs (list gnuplot))=0D=0A-=
(outputs '("debug" ;~60MB=0D=0A- "out"))=0D=0A- (arg=
uments=0D=0A- (list=0D=0A- ;; Executable files and shared librar=
ies are located in the 'platforms'=0D=0A- ;; subdirectory.=0D=0A- =
#:strip-directories=0D=0A- #~(list "share/OpenFOAM/platforms/linu=
x64GccDPInt32Opt/bin"=0D=0A- "share/OpenFOAM/platforms/linux=
64GccDPInt32Opt/lib")=0D=0A-=0D=0A- #:modules=0D=0A- '((ice-9 f=
tw)=0D=0A- (ice-9 regex)=0D=0A- (ice-9 string-fun)=0D=0A- =
(srfi srfi-1)=0D=0A- (guix build gnu-build-system)=0D=0A- =
(guix build utils))=0D=0A-=0D=0A- #:phases=0D=0A- #~(modif=
y-phases %standard-phases=0D=0A- (add-before 'build 'patch-HOME-=
path=0D=0A- (lambda _=0D=0A- (setenv "HOME" "/tmp=
")))=0D=0A- (add-before 'build 'rename-self=0D=0A- (l=
ambda _=0D=0A- ;; The script 'bin/foamEtcFile' derives the v=
ersion name based=0D=0A- ;; on the current directory name (!=
), so make sure to follow the=0D=0A- ;; expected naming conv=
ention.=0D=0A- (let ((here (canonicalize-path "."))=0D=0A- =
(target #$(string-append=0D=0A- =
"OpenFOAM-"=0D=0A- (string-map (matc=
h-lambda=0D=0A- (#\. #\-)=0D=0A=
- (chr chr))=0D=0A- =
(package-version this-package)))))=0D=0A=
- (chdir "..")=0D=0A- (format #t "renaming =
'~a' to '~a'~%"=0D=0A- here target)=0D=0A- =
(rename-file here target)=0D=0A- (chdir target))))=
=0D=0A- (add-before 'build 'patch-scotch=0D=0A- (lamb=
da _=0D=0A- (substitute* "etc/config.sh/scotch"=0D=0A- =
(("^export SCOTCH_VERSION=3Dscotch_.*$")=0D=0A- =
(string-append "export SCOTCH_VERSION=3Dscotch_"=0D=0A- =
#$(package-version pt-scotch32) "\n"))=0D=0A- =
(("^export SCOTCH_ARCH_PATH=3D.*$")=0D=0A- (string-app=
end "export SCOTCH_ARCH_PATH=3D"=0D=0A- (a=
ssoc-ref %build-inputs "pt-scotch32")=0D=0A- =
"\n"))) #t))=0D=0A- (add-before 'build 'patch-mpi=0D=0A- =
(lambda _=0D=0A- (let* ((mpi-path (assoc-ref %build-i=
nputs "openmpi"))=0D=0A- (mpi-version #$(package-vers=
ion openmpi)))=0D=0A- ;; specify openmpi type=0D=0A- =
(substitute* "etc/bashrc"=0D=0A- (("WM_MPLIB=3D=
SYSTEMOPENMPI")=0D=0A- "WM_MPLIB=3DOPENMPI"))=0D=0A- =
(substitute* "etc/config.sh/mpi"=0D=0A- (("=
export FOAM_MPI=3Dopenmpi-.*$")=0D=0A- (string-append "=
export FOAM_MPI=3Dopenmpi-"=0D=0A- mpi-v=
ersion "\n"))=0D=0A- (("export MPI_ARCH_PATH=3D.*\\$FOAM=
_MPI.*$")=0D=0A- (string-append "export MPI_ARCH_PATH=3D=
" mpi-path=0D=0A- "\n")))) #t))=0D=0A- =
(add-before 'build 'patch-paraview=0D=0A- (lambda _=0D=
=0A- (substitute* "etc/config.sh/paraview"=0D=0A- =
(("^export ParaView_VERSION=3D.*$")=0D=0A- (string-a=
ppend "export ParaView_VERSION=3D"=0D=0A- =
#$(package-version paraview) "\n"))=0D=0A- (("^export Para=
View_DIR=3D.*$")=0D=0A- (string-append "export ParaView_D=
IR=3D"=0D=0A- (assoc-ref %build-inputs "pa=
raview")=0D=0A- "\n"))) #t))=0D=0A- =
(add-before 'build 'add-rpaths=0D=0A- (lambda _=0D=0A- =
(letrec* ((libraries '("boost" "cgal"=0D=0A- =
"gmp"=0D=0A- "metis"=
=0D=0A- "mpfr"=0D=0A- =
"pt-scotch32"=0D=0A- =
"openmpi"=0D=0A- "zlib"=0D=0A- =
"paraview"))=0D=0A- =
(rpaths=0D=0A- (fold-right (lambda (library =
rpaths)=0D=0A- (string-append rpath=
s=0D=0A- "-rpath=3D"=
=0D=0A- (assoc-ref=0D=
=0A- %build-inputs =
library)=0D=0A- "/li=
b,")) "" libraries))=0D=0A- (openfoam-lib=0D=0A- =
(string-append #$output=0D=0A- =
"/share/OpenFOAM/platforms/linux64GccDPInt32Opt/lib")=
)=0D=0A- (ldflags=0D=0A- (=
string-append "-Wl,"=0D=0A- rpaths=
=0D=0A- "-rpath=3D"=0D=0A- =
openfoam-lib=0D=0A- =
","=0D=0A- "-rpa=
th=3D"=0D=0A- openfoam-lib=0D=0A- =
"/dummy,"=0D=0A- =
"-rpath=3D"=0D=0A- =
openfoam-lib=0D=0A- "/parav=
iew-"=0D=0A- #$(version-major+mino=
r (package-version=0D=0A- =
paraview)))))=0D=0A- (substitute* "wmake/r=
ules/linux64Gcc/c++"=0D=0A- (("\\$\\(LIB_HEADER_DIRS\\) =
-fPIC" all)=0D=0A- (string-append all " " ldflags)))) #=
t))=0D=0A- (add-before 'build 'add-vtk-include-path=0D=0A- =
(lambda _=0D=0A- (let* ((vtk-version #$(version-major+=
minor=0D=0A- (package-version vtk)))=0D=
=0A- (vtk-root (assoc-ref %build-inputs "vtk"))=0D=0A=
- (vtk-inc (string-append vtk-root "/include/vtk-" vt=
k-version))=0D=0A- (vtk-inc-flag (string-append "-I" =
vtk-inc)))=0D=0A- (substitute* "wmake/rules/linux64Gcc/c++=
"=0D=0A- (("\\$\\(LIB_HEADER_DIRS\\)" all)=0D=0A- =
(string-append all " " vtk-inc-flag " "))))=0D=0A- =
#t))=0D=0A- (delete 'configure) ;no configure phase=0D=0A- =
(replace 'build=0D=0A- (lambda _=0D=0A- ;;=
compile OpenFOAM libraries and applications=0D=0A- (invoke =
"bash" "-c"=0D=0A- (format #f=0D=0A- =
"source ./etc/bashrc && ./Allwmake -j~a"=0D=0A- =
(parallel-job-count)))))=0D=0A- (add-after 'bu=
ild 'cleanup=0D=0A- ;; Avoid unnecessary, voluminous object an=
d dep files.=0D=0A- (lambda _=0D=0A- (when (file-=
exists=3F "platforms/linux64GccDPInt32Opt/src")=0D=0A- (de=
lete-file-recursively=0D=0A- "platforms/linux64GccDPInt32=
Opt/src"))=0D=0A- (when (file-exists=3F=0D=0A- =
"platforms/linux64GccDPInt32OptOPENMPI")=0D=0A- (de=
lete-file-recursively=0D=0A- "platforms/linux64GccDPInt32=
OptOPENMPI"))=0D=0A- (for-each delete-file=0D=0A- =
(find-files "." "\\.o$")) #t))=0D=0A- (replace 'che=
ck=0D=0A- (lambda* (#:key tests=3F #:allow-other-keys)=0D=0A- =
(when tests=3F=0D=0A- (when (file-exists=3F "=
test")=0D=0A- (with-directory-excursion "test"=0D=0A- =
(invoke "bash" "-c"=0D=0A- (f=
ormat #f=0D=0A- "source ../etc/bashrc =
&& ./Allrun -j~a"=0D=0A- (parallel-job=
-count)))))=0D=0A- ;; too many tutorials are failing=0D=0A=
- ;; (with-directory-excursion "tutorials"=0D=0A- =
;; (invoke "bash" "-c" "source ../etc/bashrc && ./Alltest"))=0D=0A=
- ) #t))=0D=0A- (replace 'install=0D=0A- =
(lambda _=0D=0A- (let ((install-dir (string-append #$outp=
ut=0D=0A- "/share/OpenFOAM=
")))=0D=0A- (mkdir-p install-dir) ;create install director=
y=0D=0A- ;; move contents of build directory to install di=
rectory=0D=0A- (copy-recursively "." install-dir))))=0D=0A=
- (add-after 'install 'add-symbolic-link=0D=0A- (lamb=
da _=0D=0A- (let* ((bin (string-append #$output "/bin"))=0D=0A=
- (lib (string-append #$output "/lib"))=0D=0A- =
(openfoam (string-append #$output=0D=0A- =
"/share/OpenFOAM"))=0D=0A- =
(build-bin (string-append openfoam=0D=0A- =
"/platforms/linux64GccDPInt32Opt/bin"))=0D=0A- =
(build-lib (string-append openfoam=0D=0A- =
"/platforms/linux64GccDPInt32Opt/lib"))=0D=0A- =
(foam-bin (string-append openfoam "/bin")))=0D=0A- =
;; add symbolic links in standard 'bin' directory=0D=0A- =
(mkdir-p bin)=0D=0A- (for-each (lambda (file)=0D=
=0A- (unless (member file=0D=0A- =
'("." ".."))=0D=0A- =
(symlink (string-append build-bin "/"=0D=0A- =
file)=0D=0A- =
(string-append bin "/" file))))=0D=0A- =
(scandir build-bin))=0D=0A- (for-each (lambda (file)=0D=0A=
- (unless (member file=0D=0A- =
'("." ".."))=0D=0A- =
(symlink (string-append foam-bin "/"=0D=0A- =
file)=0D=0A- =
(string-append bin "/" file))))=0D=0A- (sca=
ndir foam-bin))=0D=0A- ;; add symbolic link for standard '=
lib' directory=0D=0A- (symlink build-lib lib)) #t)))))=0D=0A=
- (native-search-paths=0D=0A- (list (search-path-specification=0D=0A=
- (variable "WM_PROJECT_DIR")=0D=0A- (separator #f)=
=0D=0A- (files '("share/OpenFOAM")))))=0D=0A- ;; Note:=0D=0A=
- ;; Tutorial files are installed read-only in /gnu/store.=0D=0A- ;=
; To allow write permissions on files copied from the store a=0D=0A- ;=
; 'chmod' step is needed before running the applications. For=0D=0A- =
;; example, from a user's login:=0D=0A- ;; $ source $(dirname $(which =
blockMesh))/../../../etc/bashrc=0D=0A- ;; $ mkdir -p $FOAM_RUN=0D=0A- =
;; $ cd $FOAM_RUN=0D=0A- ;; $ cp -r $FOAM_TUTORIALS/incompressible/=
simpleFoam/pitzDaily .=0D=0A- ;; $ cd pitzDaily=0D=0A- ;; $ chmod -=
R u+w .=0D=0A- ;; $ blockMesh=0D=0A- (synopsis "Framework for numer=
ical simulation of fluid flow")=0D=0A- (description=0D=0A- "OpenFO=
AM provides a set of solvers and methods for tackling=0D=0A-problems in t=
he field of Computational Fluid Dynamics (CFD). It is written in=0D=0A-C=
++. Governing equations such as the Navier-Stokes equations can be solve=
d in=0D=0A-integral form. Physical processes such as phase change, dropl=
et transport and=0D=0A-chemical reaction can be modelled. Numerical meth=
ods are included to deal with=0D=0A-sharp gradients, such as those encoun=
tered in flows with shock waves and flows=0D=0A-with gas/liquid interface=
s. Large problems may be split into smaller, connected=0D=0A-problems fo=
r efficient solution on parallel systems.")=0D=0A- (license license:gp=
l3+)=0D=0A- (home-page "https://openfoam.org")))=0D=0A+ (let* ((versi=
on "11")=0D=0A+ (name "openfoam-org")=0D=0A+ (source (ori=
gin=0D=0A+ (method url-fetch)=0D=0A+ =
(uri (string-append "https://github.com/OpenFOAM/OpenFOAM-"=0D=0A+ =
(version-major version)=0D=0A+ =
"/archive/"=0D=0A+ =
"version-"=0D=0A+ (vers=
ion-major version)=0D=0A+ ".tar.gz"=
))=0D=0A+ (sha256 (base32=0D=0A+ =
"1h70a5ni2psx7bcx2xg6aqraj2kkbfn8mflh2akbp6k9mmpgih7b"))=0D=0A+ =
(modules '((guix build utils)))=0D=0A+ (s=
nippet `(begin=0D=0A+ ;; patch shell paths=0D=
=0A+ (substitute* (list "wmake/src/Makefile=
"=0D=0A+ "wmake/makefile=
s/general")=0D=0A+ (("/bin/sh")=0D=0A+ =
"sh"))=0D=0A+ =
(substitute* "etc/bashrc"=0D=0A+ ;; onl=
y go back one folder level=0D=0A+ (("\\$\=
\(dirname \\$\\{BASH_SOURCE:-\\$0\\}\\)/../..")=0D=0A+ =
"$(dirname ${BASH_SOURCE:-$0})/..")=0D=0A+ =
;; do not use openfoam folder convention=0D=0A+ =
(("^export WM_PROJECT_DIR=3D.*$")=0D=0A+ =
(string-append=0D=0A+ =
"export WM_PROJECT_DIR=3D$WM_PROJECT_INST_DIR=0D=0A+"))=0D=0A+ =
;; do not source bash_completion (gives err=
or)=0D=0A+ (("^.*bash_completion.*$" all)=
=0D=0A+ (string-append "#" all))=0D=0A+ =
;; set same version as guix package=0D=0A=
+ (("^export WM_PROJECT_VERSION=3D.*$")=0D=
=0A+ (string-append "export WM_PROJECT_V=
ERSION=3D"=0D=0A+ ,versio=
n "\n")))=0D=0A+ ;; add expand flag to RunF=
unctions=0D=0A+ (substitute* "bin/tools/Run=
Functions"=0D=0A+ (("foamDictionary (.*)"=
all args)=0D=0A+ (string-append "foamDi=
ctionary -expand "=0D=0A+ =
args)))=0D=0A+ ;; disable failing test=0D=0A=
+ (substitute* "test/postProcessing/channel=
/Allrun"=0D=0A+ (("^.*getApplication.*$" =
all)=0D=0A+ (string-append "#" all "\n")=
))))))=0D=0A+ (home-page "https://openfoam.org")=0D=0A+ (=
synopsis "Framework for numerical simulation of fluid flow")=0D=0A+ =
(template (openfoam-package source version name home-page synopsis)))=0D=
=0A+ (package=0D=0A+ (inherit template))))=0D=0A=20=0D=0A (define=
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guix-patches@HIDDEN:bug#66262; Package guix-patches.
Full text available.Received: (at 66262) by debbugs.gnu.org; 10 Oct 2023 06:25:59 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Tue Oct 10 02:25:59 2023 Received: from localhost ([127.0.0.1]:33842 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1qq6Br-0006y0-H9 for submit <at> debbugs.gnu.org; Tue, 10 Oct 2023 02:25:59 -0400 Received: from a2-47.smtp-out.eu-west-1.amazonses.com ([54.240.2.47]:33799) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <0102018b1842f031-14ff0ad0-2e06-4336-8a98-82b9e39635f4-000000@HIDDEN>) id 1qq6Bm-0006xb-Kb for 66262 <at> debbugs.gnu.org; Tue, 10 Oct 2023 02:25:58 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/simple; s=solmzk3ljecfoypi3q6x2mqs3bucnhjw; d=housseini.me; t=1696919122; h=Subject:From:To:Cc:Date:Mime-Version:Content-Type:Content-Transfer-Encoding:References:Message-Id; bh=7ztl5w+KDBxqhsGmVSuUA5k6ojJpejLe5IjCTFpjUW0=; b=ELmcFYz8l3qVVy6Cw1guBE3ApRRkwo94XkKCo9YqjGypBcchfKr+6QQAV2qWyxdk RTo/NDTELUx6BofrINhJ5zGCvBw/im+DSbyWLdvzpMkvIwGelINooW8+geLl03qsjkC RsQrQtaunJkJ9vlBhSgRe6AZeT4LrfDtxuA4Ve+0= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/simple; s=shh3fegwg5fppqsuzphvschd53n6ihuv; d=amazonses.com; t=1696919122; h=Subject:From:To:Cc:Date:Mime-Version:Content-Type:Content-Transfer-Encoding:References:Message-Id:Feedback-ID; bh=7ztl5w+KDBxqhsGmVSuUA5k6ojJpejLe5IjCTFpjUW0=; b=I0ohIoeI/3CELrKW0HI0nTOG73ZpYKqL9mlgpmkVUkFuVQhimTJds2CB2UFMjWHn ElKIdoBddTVTc9IRszLb0liABI3Gpf3WhfQRzT6ne3oLCN68F4svHu92qA42swEiy7Y K/UcBTg0p2VZSjbEn+YFgILmtHGncIxvHgF1PwyI= Subject: [PATCH v3 0/3] Remove paraview plugin search path. From: =?UTF-8?Q?reza?= <reza@HIDDEN> To: =?UTF-8?Q?66262=40debbugs=2Egnu=2Eorg?= <66262 <at> debbugs.gnu.org> Date: Tue, 10 Oct 2023 06:25:21 +0000 Mime-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit References: <cover.1696919009.git.reza@HIDDEN> X-Mailer: Amazon WorkMail Thread-Index: AQHZ+0KLumvKmCKhSmOZLKw0EepbNQ== Thread-Topic: [PATCH v3 0/3] Remove paraview plugin search path. X-Wm-Sent-Timestamp: 1696919121 X-Original-Mailer: git-send-email 2.41.0 Message-ID: <0102018b1842f031-14ff0ad0-2e06-4336-8a98-82b9e39635f4-000000@HIDDEN> Feedback-ID: 1.eu-west-1.b24dn6frgCi6dh20skzbuMRr7UL8M6Soir/3ogtEjHQ=:AmazonSES X-SES-Outgoing: 2023.10.10-54.240.2.47 X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 66262 Cc: =?UTF-8?Q?reza?= <reza@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) This updated patch series removes the paraview plugin search path from the openfoam-package factory function. This search path should be added to the paraview package instead. Reza Housseini (3): gnu: Add openfoam-package. gnu: openfoam-org: Update to 11. gnu: openfoam-com: Update to 2306. gnu/packages/simulation.scm | 699 ++++++++++++++++++------------------ 1 file changed, 356 insertions(+), 343 deletions(-) base-commit: 1b0ec97bce2db93ec4159a13fb0a184f012df4fe -- 2.41.0
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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guix-patches@HIDDEN:bug#66262; Package guix-patches.
Full text available.Received: (at 66262) by debbugs.gnu.org; 6 Oct 2023 12:20:39 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Fri Oct 06 08:20:39 2023 Received: from localhost ([127.0.0.1]:49358 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1qojot-00083C-D2 for submit <at> debbugs.gnu.org; Fri, 06 Oct 2023 08:20:39 -0400 Received: from mira.cbaines.net ([2a01:7e00:e000:2f8:fd4d:b5c7:13fb:3d27]:44499) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <mail@HIDDEN>) id 1qojoq-000832-O2 for 66262 <at> debbugs.gnu.org; Fri, 06 Oct 2023 08:20:37 -0400 Received: from localhost (unknown [217.155.61.229]) by mira.cbaines.net (Postfix) with ESMTPSA id 68E8827BBE2; Fri, 6 Oct 2023 13:20:16 +0100 (BST) Received: from felis (localhost [127.0.0.1]) by localhost (OpenSMTPD) with ESMTP id ef7c3ae2; Fri, 6 Oct 2023 12:20:16 +0000 (UTC) References: <03D1B03C-320E-4722-80BC-D35CB0DBDBA3@HIDDEN> <87cyxth2jp.fsf@HIDDEN> <FDFE0A4D-3301-427F-A7D5-225BD55BD225@HIDDEN> User-agent: mu4e 1.10.5; emacs 28.2 From: Christopher Baines <mail@HIDDEN> To: "reza.housseini@HIDDEN" <reza.housseini@HIDDEN> Subject: Re: Failed to build in QA Date: Fri, 06 Oct 2023 13:14:58 +0100 In-reply-to: <FDFE0A4D-3301-427F-A7D5-225BD55BD225@HIDDEN> Message-ID: <87zg0weyde.fsf@HIDDEN> MIME-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha512; protocol="application/pgp-signature" X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 66262 Cc: guix-devel@HIDDEN, 66262 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) --=-=-= Content-Type: text/plain "reza.housseini@HIDDEN" <reza.housseini@HIDDEN> writes: > On October 5, 2023 10:49:06 AM GMT+02:00, Christopher Baines <mail@HIDDEN> wrote: >> >>"reza.housseini@HIDDEN" <reza.housseini@HIDDEN> writes: >> >>> I submitted an issue to guix. But QA refuses to build it [1]. I have >>> no clue what the problem is, can anyone shed light on a possible >>> resolution? >> >>You pretty much found the problem, the relevant line on the page you >>linked to is: >> >>[ 6/ 50] loading... 24.0% of 25 filesbuilder for `/gnu/store/qhvpjfn3d9cwz5zxadblbnbqa92a8i27-guix-cli-core.drv' failed due to signal 11 (Segmentation fault) >> >>So the data service wasn't able to build Guix. This probably isn't due >>to your changes, and it doesn't happen very often, so the thing to do >>here is just retry. >> >>I've triggered QA to reapply the patches now (by deleting the >>issue-66262 branch), so hopefully things will work better this time. >> >>Thanks, >> >>Chris > > Thanks very much, it seems to have worked, but now it's stuck with > paraview undefined symbol, although the necessary module > (gnu/packages/image-processing) is imported? This is probably down to a top level circular dependency. In particular, trying to paraview to compute the version to form part of the native-search-path at the top level causes problems. Making openfoam have LD_LIBRARY_PATH as a search path seems like the incorrect use of search paths though, since you're searching for something in the same package. Replacing this with wrapping would be an improvement, although still I'm unsure why LD_LIBRARY_PATH would need setting in this case. --=-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQKlBAEBCgCPFiEEPonu50WOcg2XVOCyXiijOwuE9XcFAmUf+31fFIAAAAAALgAo aXNzdWVyLWZwckBub3RhdGlvbnMub3BlbnBncC5maWZ0aGhvcnNlbWFuLm5ldDNF ODlFRUU3NDU4RTcyMEQ5NzU0RTBCMjVFMjhBMzNCMEI4NEY1NzcRHG1haWxAY2Jh aW5lcy5uZXQACgkQXiijOwuE9XcHUw/+KXUEOkQD+2+6agDP+zeAhcCjCsiV49S3 Dq7uoP+o8WtkhVhVPEZGFzMDCzR47i6AKH9Qw2ovRX7LjVyZeUtsNNtVXVbpz7sb xkiAFd0CkxukhQqKCixZvAdzBMytv782cUpSAbwdzImmEWCmc0Y4goPsqLiW3FW+ fdjS6alEeMYuzzJL5gvxpkYd3M3fHCOTRpso2pTlDVCe1Bd4uJPvfd/4ycwvwm25 cteaX7Hpx8Z9bSP8v5imGvIsGx0Ckr9ZlSN9615A77HhJUOMSKKIlQFhb68Mcwk6 DELu/NiGlfZjW03XyTyg5GKU1TlCESy8HaU1UpUGSAessYZ1wiqFHBFSVDCPJUvg Qj2QTVcuALAlng2tBZIo77g/xdZ2QR8o/MGbCKoZRkvQC80lHV5r/ogy4zQNP6n1 bPUdN3e7eYg7X59UcrkA+cHyL0MTVeFFNCaVyiHs2RzN4ciKW050oZWA4ZZV+Qdl J/cIJJ9vYJ2+G4venSIv7ScvvyR99P62wCKvBTu+10Ki/UxyU25DMGVCrOlvx79i 4MKTa2lpioIyrhbShCYoC8657vrJrt2RLR1Y03KuLvC8sMHaknLXGnGWbT0vWsKk 5AajwAjwoSqvFkrSmARtl70NHIXA/jWJfqAHM0GY/gEJUglAYZuSy4QVHcgF2YQw mop9AfyL/FY= =GjRl -----END PGP SIGNATURE----- --=-=-=--
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH v2 3/3] gnu: openfoam-com: Update to 2306.
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* gnu/packages/simulation (openfoam-com): Update to 2306. Use openfoam-pa=
ckage=0D=0Afactory function to create package.=0D=0A---=0D=0A gnu/package=
s/simulation.scm | 70 +++++++++++++++++++------------------=0D=0A 1 file =
changed, 36 insertions(+), 34 deletions(-)=0D=0A=0D=0Adiff --git a/gnu/pa=
ckages/simulation.scm b/gnu/packages/simulation.scm=0D=0Aindex 4dc8c9e30e=
=2E.c712693e6e 100644=0D=0A--- a/gnu/packages/simulation.scm=0D=0A+++ b/g=
nu/packages/simulation.scm=0D=0A@@ -88,40 +88,6 @@ (define-module (gnu pa=
ckages simulation)=0D=0A #:use-module (ice-9 regex)=0D=0A #:use-modul=
e (srfi srfi-1))=0D=0A=20=0D=0A-(define-public openfoam-com=0D=0A- ;; Th=
is is a fork of 'openfoam-org', maintained separately.=0D=0A- (package=0D=
=0A- (inherit openfoam-org)=0D=0A- (name "openfoam-com")=0D=0A- =
(version "2212")=0D=0A- (source (origin=0D=0A- (method ur=
l-fetch)=0D=0A- (uri (string-append "https://develop.openfoa=
m.com"=0D=0A- "/Development/openfoam/-/a=
rchive/OpenFOAM-v"=0D=0A- version=0D=0A-=
"/openfoam-OpenFOAM-v"=0D=0A- =
version=0D=0A- "=
=2Etar.gz"))=0D=0A- (sha256=0D=0A- (base32=0D=0A=
- "0i9039hfz9gvgymkdjhjvvn5500zha3cpdbpqrzfrfi8lbz10is2"))=
=0D=0A- (modules '((guix build utils)))=0D=0A- =
(snippet `(begin=0D=0A- (substitute* "etc/bashrc=
"=0D=0A- ;; set same version as guix package=0D=
=0A-=09=09=09 (("^export WM_PROJECT_VERSION=3D.*$")=0D=0A-=09=09=09 =
(string-append "export WM_PROJECT_VERSION=3D"=0D=0A-=09=09=09=09=09 =
,version "\n")))=0D=0A- ;; patch shell paths=0D=0A=
- (substitute* (list "src/OSspecific/POSIX/POSIX=
=2EC"=0D=0A- "wmake/src/Makef=
ile"=0D=0A- "wmake/makefiles/=
general"=0D=0A- "wmake/makefi=
les/info")=0D=0A- (("/bin/sh")=0D=0A- =
"sh"))))))=0D=0A- (synopsis "Framework for numeric=
al simulation of fluid flow (from openfoam.com)")=0D=0A- (home-page "h=
ttps://www.openfoam.com")))=0D=0A-=0D=0A (define* (openfoam-package sourc=
e version name home-page synopsis)=0D=0A (let* ((install-path (string-a=
ppend "share/OpenFOAM-" version))=0D=0A (paraview-version (versi=
on-major+minor (package-version paraview)))=0D=0A@@ -471,6 +437,42 @@ (de=
fine-public openfoam-org=0D=0A (define-public openfoam=0D=0A (deprecate=
d-package "openfoam" openfoam-org))=0D=0A=20=0D=0A+(define-public openfoa=
m-com=0D=0A+ ;; This is a fork of 'openfoam-org', maintained separately.=
=0D=0A+ (let* ((version "2306")=0D=0A+ (name "openfoam-com")=0D=0A=
+ (source (origin=0D=0A+ (method url-fetch)=0D=0A=
+ (uri (string-append "https://develop.openfoam.com"=0D=
=0A+ "/Development/openfoam/-/archi=
ve/OpenFOAM-v"=0D=0A+ version=0D=0A=
+ "/openfoam-OpenFOAM-v"=0D=0A+ =
version=0D=0A+ =
".tar.gz"))=0D=0A+ (sha256 (base32=0D=0A=
+ "0zlkp48vygl2a5cyl0mfpj8dsb5bffviq96rg3kws1l=
6ni40v7jr"))=0D=0A+ (modules '((guix build utils)))=0D=0A=
+ (snippet `(begin=0D=0A+ =
(substitute* "etc/bashrc"=0D=0A+ ;; set =
same version as guix package=0D=0A+ (("^e=
xport WM_PROJECT_VERSION=3D.*$")=0D=0A+ =
(string-append "export WM_PROJECT_VERSION=3D"=0D=0A+ =
,version "\n")))=0D=0A+ =
;; patch shell paths=0D=0A+ (subst=
itute* (list=0D=0A+ "src/OSsp=
ecific/POSIX/POSIX.C"=0D=0A+ =
"wmake/src/Makefile"=0D=0A+ "=
wmake/makefiles/general"=0D=0A+ =
"wmake/makefiles/info")=0D=0A+ (("/bin=
/sh")=0D=0A+ "sh"))))))=0D=0A+ (=
home-page "https://www.openfoam.com")=0D=0A+ (synopsis=0D=0A+ =
"Framework for numerical simulation of fluid flow (from openfoam.co=
m)")=0D=0A+ (template (openfoam-package source version name home-=
page synopsis)))=0D=0A+ (package=0D=0A+ (inherit template))))=0D=0A=
+=0D=0A (define-public open-simulation-interface=0D=0A (package=0D=0A =
(name "open-simulation-interface")=0D=0A--=20=0D=0A2.41.0=0D=0A=0D=0A
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH v2 2/3] gnu: openfoam-org: Update to 11.
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* gnu/packages/simulation.scm (openfoam-org): Update to 11. Use=0D=0Aopen=
foam-package factory function to create package.=0D=0A---=0D=0A gnu/packa=
ges/simulation.scm | 382 +++++-------------------------------=0D=0A 1 fil=
e changed, 54 insertions(+), 328 deletions(-)=0D=0A=0D=0Adiff --git a/gnu=
/packages/simulation.scm b/gnu/packages/simulation.scm=0D=0Aindex ab4f7c1=
24f..4dc8c9e30e 100644=0D=0A--- a/gnu/packages/simulation.scm=0D=0A+++ b/=
gnu/packages/simulation.scm=0D=0A@@ -88,334 +88,6 @@ (define-module (gnu =
packages simulation)=0D=0A #:use-module (ice-9 regex)=0D=0A #:use-mod=
ule (srfi srfi-1))=0D=0A=20=0D=0A-(define-public openfoam-org=0D=0A- (pa=
ckage=0D=0A- (name "openfoam-org")=0D=0A- (version "10.20230119")=0D=
=0A- (source (origin=0D=0A- (method git-fetch)=0D=0A- =
(uri (git-reference=0D=0A- (url (string-appe=
nd "https://github.com/OpenFOAM/OpenFOAM-"=0D=0A- =
(version-major version)))=0D=0A- (comm=
it (second (string-split version #\.)))))=0D=0A- (sha256=0D=0A=
- (base32=0D=0A- "0icvwg7s6vnkgmdiczivia9pbr=
gx8nanw9a4j080fzfvdv9vxhzp"))=0D=0A- (file-name (git-file-na=
me name version))=0D=0A- (modules '((guix build utils)))=0D=0A=
- (snippet `(begin=0D=0A- ;; patch =
shell paths=0D=0A- (substitute* (list "wmake/src=
/Makefile"=0D=0A- "wmake/make=
files/general")=0D=0A- (("/bin/sh")=0D=0A- =
"sh"))=0D=0A- (substitu=
te* "etc/bashrc"=0D=0A- ;; only go back one fo=
lder level=0D=0A- (("\\$\\(dirname \\$\\{BASH_=
SOURCE:-\\$0\\}\\)/../..")=0D=0A- "$(dirname =
${BASH_SOURCE:-$0})/..")=0D=0A- ;; do not use =
openfoam folder convention=0D=0A- (("^export W=
M_PROJECT_DIR=3D.*$")=0D=0A- (string-append=0D=
=0A- "export WM_PROJECT_DIR=3D$WM_PROJECT_IN=
ST_DIR\n"))=0D=0A- ;; do not source bash_compl=
etion (gives error)=0D=0A- (("^.*bash_completi=
on.*$" all)=0D=0A- (string-append "#" all))=0D=
=0A- ;; set same version as guix package=0D=0A=
- (("^export WM_PROJECT_VERSION=3D.*$")=0D=0A-=
(string-append "export WM_PROJECT_VERSION=3D=
"=0D=0A- ,version "\n")))=0D=0A=
- ;; add expand flag to RunFunctions=0D=0A- =
(substitute* "bin/tools/RunFunctions"=0D=0A- =
(("foamDictionary (.*)" all args)=0D=0A- =
(string-append "foamDictionary -expand " args)))=0D=0A- =
;; disable failing test=0D=0A- =
(substitute* "test/postProcessing/channel/Allrun"=0D=0A- =
(("^.*getApplication.*$" all)=0D=0A- =
(string-append "#" all "\n")))))))=0D=0A- (build-system gnu-=
build-system)=0D=0A- (inputs (list boost=0D=0A- cgal=0D=
=0A- git=0D=0A- gmp=0D=0A- =
libxt=0D=0A- metis=0D=0A- mpfr=0D=0A=
- ncurses=0D=0A- openmpi=0D=0A- =
openssh=0D=0A- paraview=0D=0A- =
pt-scotch32=0D=0A- readline=0D=0A- zl=
ib))=0D=0A- (native-inputs (list bison=0D=0A- =
flex=0D=0A- ;; paraview plugin dependencies=0D=0A=
- cli11=0D=0A- cmake-mini=
mal=0D=0A- cgns=0D=0A- cu=
rl=0D=0A- double-conversion=0D=0A- =
eigen=0D=0A- expat=0D=0A- =
ffmpeg=0D=0A- fmt=0D=0A- =
freetype=0D=0A- gdal=0D=0A- =
gl2ps=0D=0A- glew=0D=0A- =
gmsh=0D=0A- hdf5=0D=0A- =
jsoncpp=0D=0A- libjpeg-turbo=0D=0A- =
libogg=0D=0A- libpng=0D=0A=
- libharu=0D=0A- libtheor=
a=0D=0A- libtiff=0D=0A- l=
ibx11=0D=0A- libxml2=0D=0A- =
lz4=0D=0A- netcdf=0D=0A- =
nlohmann-json=0D=0A- proj=0D=0A- =
protobuf=0D=0A- pugixml=0D=0A- =
python=0D=0A- python-mpi4py=0D=0A=
- qtbase-5=0D=0A- qtsvg-5=
=0D=0A- qttools-5=0D=0A- =
qtwebengine-5=0D=0A- qtxmlpatterns=0D=0A- =
utfcpp=0D=0A- vtk=0D=0A- =
xz))=0D=0A- (propagated-inputs (list gnuplot))=0D=0A-=
(outputs '("debug" ;~60MB=0D=0A- "out"))=0D=0A- (arg=
uments=0D=0A- (list=0D=0A- ;; Executable files and shared librar=
ies are located in the 'platforms'=0D=0A- ;; subdirectory.=0D=0A- =
#:strip-directories=0D=0A- #~(list "share/OpenFOAM/platforms/linu=
x64GccDPInt32Opt/bin"=0D=0A- "share/OpenFOAM/platforms/linux=
64GccDPInt32Opt/lib")=0D=0A-=0D=0A- #:modules=0D=0A- '((ice-9 f=
tw)=0D=0A- (ice-9 regex)=0D=0A- (ice-9 string-fun)=0D=0A- =
(srfi srfi-1)=0D=0A- (guix build gnu-build-system)=0D=0A- =
(guix build utils))=0D=0A-=0D=0A- #:phases=0D=0A- #~(modif=
y-phases %standard-phases=0D=0A- (add-before 'build 'patch-HOME-=
path=0D=0A- (lambda _=0D=0A- (setenv "HOME" "/tmp=
")))=0D=0A- (add-before 'build 'rename-self=0D=0A- (l=
ambda _=0D=0A- ;; The script 'bin/foamEtcFile' derives the v=
ersion name based=0D=0A- ;; on the current directory name (!=
), so make sure to follow the=0D=0A- ;; expected naming conv=
ention.=0D=0A- (let ((here (canonicalize-path "."))=0D=0A- =
(target #$(string-append=0D=0A- =
"OpenFOAM-"=0D=0A- (string-map (matc=
h-lambda=0D=0A- (#\. #\-)=0D=0A=
- (chr chr))=0D=0A- =
(package-version this-package)))))=0D=0A=
- (chdir "..")=0D=0A- (format #t "renaming =
'~a' to '~a'~%"=0D=0A- here target)=0D=0A- =
(rename-file here target)=0D=0A- (chdir target))))=
=0D=0A- (add-before 'build 'patch-scotch=0D=0A- (lamb=
da _=0D=0A- (substitute* "etc/config.sh/scotch"=0D=0A- =
(("^export SCOTCH_VERSION=3Dscotch_.*$")=0D=0A- =
(string-append "export SCOTCH_VERSION=3Dscotch_"=0D=0A- =
#$(package-version pt-scotch32) "\n"))=0D=0A- =
(("^export SCOTCH_ARCH_PATH=3D.*$")=0D=0A- (string-app=
end "export SCOTCH_ARCH_PATH=3D"=0D=0A- (a=
ssoc-ref %build-inputs "pt-scotch32")=0D=0A- =
"\n"))) #t))=0D=0A- (add-before 'build 'patch-mpi=0D=0A- =
(lambda _=0D=0A- (let* ((mpi-path (assoc-ref %build-i=
nputs "openmpi"))=0D=0A- (mpi-version #$(package-vers=
ion openmpi)))=0D=0A- ;; specify openmpi type=0D=0A- =
(substitute* "etc/bashrc"=0D=0A- (("WM_MPLIB=3D=
SYSTEMOPENMPI")=0D=0A- "WM_MPLIB=3DOPENMPI"))=0D=0A- =
(substitute* "etc/config.sh/mpi"=0D=0A- (("=
export FOAM_MPI=3Dopenmpi-.*$")=0D=0A- (string-append "=
export FOAM_MPI=3Dopenmpi-"=0D=0A- mpi-v=
ersion "\n"))=0D=0A- (("export MPI_ARCH_PATH=3D.*\\$FOAM=
_MPI.*$")=0D=0A- (string-append "export MPI_ARCH_PATH=3D=
" mpi-path=0D=0A- "\n")))) #t))=0D=0A- =
(add-before 'build 'patch-paraview=0D=0A- (lambda _=0D=
=0A- (substitute* "etc/config.sh/paraview"=0D=0A- =
(("^export ParaView_VERSION=3D.*$")=0D=0A- (string-a=
ppend "export ParaView_VERSION=3D"=0D=0A- =
#$(package-version paraview) "\n"))=0D=0A- (("^export Para=
View_DIR=3D.*$")=0D=0A- (string-append "export ParaView_D=
IR=3D"=0D=0A- (assoc-ref %build-inputs "pa=
raview")=0D=0A- "\n"))) #t))=0D=0A- =
(add-before 'build 'add-rpaths=0D=0A- (lambda _=0D=0A- =
(letrec* ((libraries '("boost" "cgal"=0D=0A- =
"gmp"=0D=0A- "metis"=
=0D=0A- "mpfr"=0D=0A- =
"pt-scotch32"=0D=0A- =
"openmpi"=0D=0A- "zlib"=0D=0A- =
"paraview"))=0D=0A- =
(rpaths=0D=0A- (fold-right (lambda (library =
rpaths)=0D=0A- (string-append rpath=
s=0D=0A- "-rpath=3D"=
=0D=0A- (assoc-ref=0D=
=0A- %build-inputs =
library)=0D=0A- "/li=
b,")) "" libraries))=0D=0A- (openfoam-lib=0D=0A- =
(string-append #$output=0D=0A- =
"/share/OpenFOAM/platforms/linux64GccDPInt32Opt/lib")=
)=0D=0A- (ldflags=0D=0A- (=
string-append "-Wl,"=0D=0A- rpaths=
=0D=0A- "-rpath=3D"=0D=0A- =
openfoam-lib=0D=0A- =
","=0D=0A- "-rpa=
th=3D"=0D=0A- openfoam-lib=0D=0A- =
"/dummy,"=0D=0A- =
"-rpath=3D"=0D=0A- =
openfoam-lib=0D=0A- "/parav=
iew-"=0D=0A- #$(version-major+mino=
r (package-version=0D=0A- =
paraview)))))=0D=0A- (substitute* "wmake/r=
ules/linux64Gcc/c++"=0D=0A- (("\\$\\(LIB_HEADER_DIRS\\) =
-fPIC" all)=0D=0A- (string-append all " " ldflags)))) #=
t))=0D=0A- (add-before 'build 'add-vtk-include-path=0D=0A- =
(lambda _=0D=0A- (let* ((vtk-version #$(version-major+=
minor=0D=0A- (package-version vtk)))=0D=
=0A- (vtk-root (assoc-ref %build-inputs "vtk"))=0D=0A=
- (vtk-inc (string-append vtk-root "/include/vtk-" vt=
k-version))=0D=0A- (vtk-inc-flag (string-append "-I" =
vtk-inc)))=0D=0A- (substitute* "wmake/rules/linux64Gcc/c++=
"=0D=0A- (("\\$\\(LIB_HEADER_DIRS\\)" all)=0D=0A- =
(string-append all " " vtk-inc-flag " "))))=0D=0A- =
#t))=0D=0A- (delete 'configure) ;no configure phase=0D=0A- =
(replace 'build=0D=0A- (lambda _=0D=0A- ;;=
compile OpenFOAM libraries and applications=0D=0A- (invoke =
"bash" "-c"=0D=0A- (format #f=0D=0A- =
"source ./etc/bashrc && ./Allwmake -j~a"=0D=0A- =
(parallel-job-count)))))=0D=0A- (add-after 'bu=
ild 'cleanup=0D=0A- ;; Avoid unnecessary, voluminous object an=
d dep files.=0D=0A- (lambda _=0D=0A- (when (file-=
exists=3F "platforms/linux64GccDPInt32Opt/src")=0D=0A- (de=
lete-file-recursively=0D=0A- "platforms/linux64GccDPInt32=
Opt/src"))=0D=0A- (when (file-exists=3F=0D=0A- =
"platforms/linux64GccDPInt32OptOPENMPI")=0D=0A- (de=
lete-file-recursively=0D=0A- "platforms/linux64GccDPInt32=
OptOPENMPI"))=0D=0A- (for-each delete-file=0D=0A- =
(find-files "." "\\.o$")) #t))=0D=0A- (replace 'che=
ck=0D=0A- (lambda* (#:key tests=3F #:allow-other-keys)=0D=0A- =
(when tests=3F=0D=0A- (when (file-exists=3F "=
test")=0D=0A- (with-directory-excursion "test"=0D=0A- =
(invoke "bash" "-c"=0D=0A- (f=
ormat #f=0D=0A- "source ../etc/bashrc =
&& ./Allrun -j~a"=0D=0A- (parallel-job=
-count)))))=0D=0A- ;; too many tutorials are failing=0D=0A=
- ;; (with-directory-excursion "tutorials"=0D=0A- =
;; (invoke "bash" "-c" "source ../etc/bashrc && ./Alltest"))=0D=0A=
- ) #t))=0D=0A- (replace 'install=0D=0A- =
(lambda _=0D=0A- (let ((install-dir (string-append #$outp=
ut=0D=0A- "/share/OpenFOAM=
")))=0D=0A- (mkdir-p install-dir) ;create install director=
y=0D=0A- ;; move contents of build directory to install di=
rectory=0D=0A- (copy-recursively "." install-dir))))=0D=0A=
- (add-after 'install 'add-symbolic-link=0D=0A- (lamb=
da _=0D=0A- (let* ((bin (string-append #$output "/bin"))=0D=0A=
- (lib (string-append #$output "/lib"))=0D=0A- =
(openfoam (string-append #$output=0D=0A- =
"/share/OpenFOAM"))=0D=0A- =
(build-bin (string-append openfoam=0D=0A- =
"/platforms/linux64GccDPInt32Opt/bin"))=0D=0A- =
(build-lib (string-append openfoam=0D=0A- =
"/platforms/linux64GccDPInt32Opt/lib"))=0D=0A- =
(foam-bin (string-append openfoam "/bin")))=0D=0A- =
;; add symbolic links in standard 'bin' directory=0D=0A- =
(mkdir-p bin)=0D=0A- (for-each (lambda (file)=0D=
=0A- (unless (member file=0D=0A- =
'("." ".."))=0D=0A- =
(symlink (string-append build-bin "/"=0D=0A- =
file)=0D=0A- =
(string-append bin "/" file))))=0D=0A- =
(scandir build-bin))=0D=0A- (for-each (lambda (file)=0D=0A=
- (unless (member file=0D=0A- =
'("." ".."))=0D=0A- =
(symlink (string-append foam-bin "/"=0D=0A- =
file)=0D=0A- =
(string-append bin "/" file))))=0D=0A- (sca=
ndir foam-bin))=0D=0A- ;; add symbolic link for standard '=
lib' directory=0D=0A- (symlink build-lib lib)) #t)))))=0D=0A=
- (native-search-paths=0D=0A- (list (search-path-specification=0D=0A=
- (variable "WM_PROJECT_DIR")=0D=0A- (separator #f)=
=0D=0A- (files '("share/OpenFOAM")))))=0D=0A- ;; Note:=0D=0A=
- ;; Tutorial files are installed read-only in /gnu/store.=0D=0A- ;=
; To allow write permissions on files copied from the store a=0D=0A- ;=
; 'chmod' step is needed before running the applications. For=0D=0A- =
;; example, from a user's login:=0D=0A- ;; $ source $(dirname $(which =
blockMesh))/../../../etc/bashrc=0D=0A- ;; $ mkdir -p $FOAM_RUN=0D=0A- =
;; $ cd $FOAM_RUN=0D=0A- ;; $ cp -r $FOAM_TUTORIALS/incompressible/=
simpleFoam/pitzDaily .=0D=0A- ;; $ cd pitzDaily=0D=0A- ;; $ chmod -=
R u+w .=0D=0A- ;; $ blockMesh=0D=0A- (synopsis "Framework for numer=
ical simulation of fluid flow")=0D=0A- (description=0D=0A- "OpenFO=
AM provides a set of solvers and methods for tackling=0D=0A-problems in t=
he field of Computational Fluid Dynamics (CFD). It is written in=0D=0A-C=
++. Governing equations such as the Navier-Stokes equations can be solve=
d in=0D=0A-integral form. Physical processes such as phase change, dropl=
et transport and=0D=0A-chemical reaction can be modelled. Numerical meth=
ods are included to deal with=0D=0A-sharp gradients, such as those encoun=
tered in flows with shock waves and flows=0D=0A-with gas/liquid interface=
s. Large problems may be split into smaller, connected=0D=0A-problems fo=
r efficient solution on parallel systems.")=0D=0A- (license license:gp=
l3+)=0D=0A- (home-page "https://openfoam.org")))=0D=0A-=0D=0A-(define-=
public openfoam=0D=0A- (deprecated-package "openfoam" openfoam-org))=0D=0A=
-=0D=0A (define-public openfoam-com=0D=0A ;; This is a fork of 'openfoa=
m-org', maintained separately.=0D=0A (package=0D=0A@@ -745,6 +417,60 @@=
(define* (openfoam-package source version name home-page synopsis)=0D=0A=
(license license:gpl3+)=0D=0A (home-page home-page))))=0D=0A=
=20=0D=0A+(define-public openfoam-org=0D=0A+ (let* ((version "11")=0D=0A=
+ (name "openfoam-org")=0D=0A+ (source (origin=0D=0A+ =
(method url-fetch)=0D=0A+ (uri (string-a=
ppend "https://github.com/OpenFOAM/OpenFOAM-"=0D=0A+ =
(version-major version)=0D=0A+ =
"/archive/"=0D=0A+ "v=
ersion-"=0D=0A+ (version-major vers=
ion)=0D=0A+ ".tar.gz"))=0D=0A+ =
(sha256 (base32=0D=0A+ "1h70a5ni=
2psx7bcx2xg6aqraj2kkbfn8mflh2akbp6k9mmpgih7b"))=0D=0A+ =
(modules '((guix build utils)))=0D=0A+ (snippet `(begin=
=0D=0A+ ;; patch shell paths=0D=0A+ =
(substitute* (list "wmake/src/Makefile"=0D=0A+ =
"wmake/makefiles/general")=0D=
=0A+ (("/bin/sh")=0D=0A+ =
"sh"))=0D=0A+ (substitute*=
"etc/bashrc"=0D=0A+ ;; only go back one =
folder level=0D=0A+ (("\\$\\(dirname \\$\=
\{BASH_SOURCE:-\\$0\\}\\)/../..")=0D=0A+ =
"$(dirname ${BASH_SOURCE:-$0})/..")=0D=0A+ =
;; do not use openfoam folder convention=0D=0A+ =
(("^export WM_PROJECT_DIR=3D.*$")=0D=0A+ =
(string-append=0D=0A+ "expor=
t WM_PROJECT_DIR=3D$WM_PROJECT_INST_DIR=0D=0A+"))=0D=0A+ =
;; do not source bash_completion (gives error)=0D=0A+ =
(("^.*bash_completion.*$" all)=0D=0A+ =
(string-append "#" all))=0D=0A+ =
;; set same version as guix package=0D=0A+ =
(("^export WM_PROJECT_VERSION=3D.*$")=0D=0A+ =
(string-append "export WM_PROJECT_VERSION=3D"=0D=
=0A+ ,version "\n")))=0D=0A=
+ ;; add expand flag to RunFunctions=0D=0A+=
(substitute* "bin/tools/RunFunctions"=0D=0A=
+ (("foamDictionary (.*)" all args)=0D=0A=
+ (string-append "foamDictionary -expand=
"=0D=0A+ args)))=0D=0A+ =
;; disable failing test=0D=0A+ =
(substitute* "test/postProcessing/channel/Allrun"=0D=0A=
+ (("^.*getApplication.*$" all)=0D=0A+ =
(string-append "#" all "\n")))))))=0D=0A+ =
(home-page "https://openfoam.org")=0D=0A+ (synopsis "Fram=
ework for numerical simulation of fluid flow")=0D=0A+ (template (=
openfoam-package source version name home-page synopsis)))=0D=0A+ (pac=
kage=0D=0A+ (inherit template))))=0D=0A+=0D=0A+(define-public openfo=
am=0D=0A+ (deprecated-package "openfoam" openfoam-org))=0D=0A+=0D=0A (de=
fine-public open-simulation-interface=0D=0A (package=0D=0A (name "o=
pen-simulation-interface")=0D=0A--=20=0D=0A2.41.0=0D=0A=0D=0A
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH v2 1/3] gnu: Add openfoam-package.
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* gnu/packages/simulation.scm (openfoam-package): Add factory function to=
=0D=0Agenerate openfoam packages. Improve build tree clean up.=0D=0A---=0D=
=0A gnu/packages/simulation.scm | 295 +++++++++++++++++++++++++++++++++++=
+=0D=0A 1 file changed, 295 insertions(+)=0D=0A=0D=0Adiff --git a/gnu/pac=
kages/simulation.scm b/gnu/packages/simulation.scm=0D=0Aindex b2fb123815.=
=2Eab4f7c124f 100644=0D=0A--- a/gnu/packages/simulation.scm=0D=0A+++ b/gn=
u/packages/simulation.scm=0D=0A@@ -450,6 +450,301 @@ (define-public openf=
oam-com=0D=0A (synopsis "Framework for numerical simulation of fluid =
flow (from openfoam.com)")=0D=0A (home-page "https://www.openfoam.com=
")))=0D=0A=20=0D=0A+(define* (openfoam-package source version name home-p=
age synopsis)=0D=0A+ (let* ((install-path (string-append "share/OpenFOAM=
-" version))=0D=0A+ (paraview-version (version-major+minor (packa=
ge-version paraview)))=0D=0A+ (pv-plugin-path=0D=0A+ (st=
ring-append install-path=0D=0A+ "/platforms/linux=
64GccDPInt32Opt/lib/paraview-"=0D=0A+ paraview-ve=
rsion)))=0D=0A+ (package=0D=0A+ (name name)=0D=0A+ (version =
version)=0D=0A+ (source source)=0D=0A+ (build-system gnu-build-=
system)=0D=0A+ (native-search-paths=0D=0A+ (list (search-path-=
specification=0D=0A+=09 (variable "WM_PROJECT_DIR")=0D=0A+=09 (=
files `(,install-path)))=0D=0A+ ;; add PV_PLUGIN_PATH to LD_L=
IBRARY_PATH so paraview=0D=0A+ ;; finds the OpenFOAM PV plugi=
ns=0D=0A+ (search-path-specification=0D=0A+=09 (variable=
"LD_LIBRARY_PATH")=0D=0A+=09 (files `(,pv-plugin-path)))))=0D=0A+ =
(inputs (list boost=0D=0A+=09=09 cgal=0D=0A+=09=09 git=0D=0A+=09=
=09 gmp=0D=0A+=09=09 libxt=0D=0A+=09=09 metis=0D=0A+=09=09 mp=
fr=0D=0A+=09=09 ncurses=0D=0A+=09=09 openmpi=0D=0A+=09=09 openss=
h=0D=0A+=09=09 paraview=0D=0A+=09=09 pt-scotch32=0D=0A+=09=09 re=
adline=0D=0A+=09=09 scotch=0D=0A+=09=09 zlib))=0D=0A+ (native-=
inputs (list bison=0D=0A+=09=09 flex=0D=0A+=09=09 ;; =
paraview plugin dependencies=0D=0A+=09=09 cli11=0D=0A+=09=09 =
cmake-minimal=0D=0A+=09=09 cgns=0D=0A+=09=09 =
curl=0D=0A+=09=09 double-conversion=0D=0A+=09=09 eige=
n=0D=0A+=09=09 expat=0D=0A+=09=09 ffmpeg=0D=0A+=09=09=
fmt=0D=0A+=09=09 freetype=0D=0A+=09=09 gda=
l=0D=0A+=09=09 gl2ps=0D=0A+=09=09 glew=0D=0A+=09=09 =
gmsh=0D=0A+=09=09 hdf5=0D=0A+=09=09 jsoncpp=0D=
=0A+=09=09 libjpeg-turbo=0D=0A+=09=09 libogg=0D=0A+=09=
=09 libpng=0D=0A+=09=09 libharu=0D=0A+=09=09 =
libtheora=0D=0A+=09=09 libtiff=0D=0A+=09=09 libx11=0D=
=0A+=09=09 libxml2=0D=0A+=09=09 lz4=0D=0A+=09=09 =
netcdf=0D=0A+=09=09 nlohmann-json=0D=0A+=09=09 =
proj=0D=0A+=09=09 protobuf=0D=0A+=09=09 pugixml=0D=0A=
+=09=09 python=0D=0A+=09=09 python-mpi4py=0D=0A+=09=09=
qtbase-5=0D=0A+=09=09 qtsvg-5=0D=0A+=09=09 =
qttools-5=0D=0A+=09=09 qtwebengine-5=0D=0A+=09=09 qt=
xmlpatterns=0D=0A+=09=09 utfcpp=0D=0A+=09=09 vtk=0D=0A=
+=09=09 xz))=0D=0A+ (propagated-inputs (list gnuplot))=0D=0A=
+ (outputs '("debug" ;~60MB=0D=0A+=09 "out"))=0D=0A+ (a=
rguments=0D=0A+ (list=0D=0A+ ;; Executable files and shared =
libraries are located in the 'platforms'=0D=0A+ ;; subdirectory.=0D=
=0A+ #:strip-directories=0D=0A+ #~(list (string-append "Ope=
nFOAM-" #$version "/platforms/linux64GccDPInt32Opt/bin")=0D=0A+=09 =
(string-append "OpenFOAM-" #$version "/platforms/linux64GccDPInt32Opt/li=
b"))=0D=0A+=0D=0A+ #:modules=0D=0A+ '((ice-9 ftw)=0D=0A+ =
(ice-9 regex)=0D=0A+ (ice-9 string-fun)=0D=0A+ (=
srfi srfi-1)=0D=0A+ (guix build gnu-build-system)=0D=0A+ =
(guix build utils))=0D=0A+=0D=0A+ #:phases=0D=0A+ #~(modi=
fy-phases %standard-phases=0D=0A+=09 (add-before 'build 'patch-HOME-pa=
th=0D=0A+=09 (lambda _=0D=0A+=09 (setenv "HOME" "/tmp") #t))=0D=
=0A+=09 (add-before 'build 'patch-scotch=0D=0A+=09 (lambda _=0D=0A=
+=09 (substitute* "etc/config.sh/scotch"=0D=0A+=09 (("^ex=
port SCOTCH_VERSION=3Dscotch_.*$")=0D=0A+=09 (string-append "ex=
port SCOTCH_VERSION=3Dscotch_"=0D=0A+=09=09=09 #$(package-versio=
n pt-scotch32) "\n"))=0D=0A+=09 (("^export SCOTCH_ARCH_PATH=3D.*=
$")=0D=0A+=09 (string-append "export SCOTCH_ARCH_PATH=3D" #$pt-=
scotch32 "\n")))=0D=0A+=09 #t))=0D=0A+=09 (add-before 'build 'p=
atch-mpi=0D=0A+=09 (lambda _=0D=0A+=09 (let* ((mpi-version #$=
(package-version openmpi)))=0D=0A+=09 ;; specify openmpi type=0D=
=0A+=09 (substitute* "etc/bashrc"=0D=0A+=09=09 (("WM_MPLIB=3D=
SYSTEMOPENMPI")=0D=0A+=09=09 "WM_MPLIB=3DOPENMPI"))=0D=0A+=09 =
(substitute* "etc/config.sh/mpi"=0D=0A+=09=09 (("export FOAM_MPI=3Do=
penmpi-.*$")=0D=0A+=09=09 (string-append "export FOAM_MPI=3Dopenmpi-"=
=0D=0A+=09=09=09=09 mpi-version "\n"))=0D=0A+=09=09 (("export MPI_A=
RCH_PATH=3D.*\\$FOAM_MPI.*$")=0D=0A+=09=09 (string-append "export MPI=
_ARCH_PATH=3D" #$openmpi "\n"))))=0D=0A+=09 #t))=0D=0A+=09 (add=
-before 'build 'patch-paraview=0D=0A+=09 (lambda _=0D=0A+=09 =
(substitute* "etc/config.sh/paraview"=0D=0A+=09 (("^export ParaV=
iew_VERSION=3D.*$")=0D=0A+=09 (string-append "export ParaView_V=
ERSION=3D"=0D=0A+=09=09=09 #$(package-version paraview) "\n"))=0D=
=0A+=09 (("^export ParaView_DIR=3D.*$")=0D=0A+=09 (str=
ing-append "export ParaView_DIR=3D" #$paraview "\n"))=0D=0A+ =
(("export ParaView_GL=3Dmesa") "export ParaView_GL=3Dsystem"))=0D=0A=
+=09 #t))=0D=0A+=09 (add-before 'build 'add-rpaths=0D=0A+=09 =
(lambda _=0D=0A+=09 (letrec* ((libraries '("boost"=0D=0A+=09=09=
=09=09 "cgal"=0D=0A+=09=09=09=09 "gmp"=0D=0A+=09=09=09=09 =
"metis"=0D=0A+=09=09=09=09 "mpfr"=0D=0A+=09=09=09=09 "scot=
ch"=0D=0A+=09=09=09=09 "pt-scotch32"=0D=0A+ =09=09=09=09 "ope=
nmpi"=0D=0A+=09=09=09=09 "zlib"=0D=0A+=09=09=09=09 "paraview"=
))=0D=0A+=09=09 (rpaths=0D=0A+=09=09 (fold-right (lamb=
da (lib rpaths)=0D=0A+=09=09=09=09 (string-append rpaths=0D=0A+=09=
=09=09=09=09=09 "-rpath=3D"=0D=0A+=09=09=09=09=09=09 (assoc=
-ref %build-inputs lib)=0D=0A+=09=09=09=09=09=09 "/lib,")) "" libr=
aries))=0D=0A+=09=09 (openfoam-lib=0D=0A+=09=09 (strin=
g-append #$output=0D=0A+=09=09=09=09 "/share/OpenFOAM-" #$versio=
n=0D=0A+=09=09=09=09 "/platforms/linux64GccDPInt32Opt/lib"))=0D=0A=
+=09=09 (ldflags=0D=0A+=09=09 (string-append "-Wl,"=0D=
=0A+=09=09=09=09 rpaths=0D=0A+=09=09=09=09 "-rpath=3D"=0D=
=0A+=09=09=09=09 openfoam-lib=0D=0A+=09=09=09=09 ","=0D=
=0A+=09=09=09=09 "-rpath=3D"=0D=0A+=09=09=09=09 openfoa=
m-lib=0D=0A+=09=09=09=09 "/dummy,"=0D=0A+=09=09=09=09 "=
-rpath=3D"=0D=0A+=09=09=09=09 openfoam-lib=0D=0A+=09=09=09=09 =
"/paraview-"=0D=0A+=09=09=09=09 #$(version-major+minor (p=
ackage-version=0D=0A+=09=09=09=09=09=09=09 paraview)))))=0D=0A+=09=
(substitute* "wmake/rules/linux64Gcc/c++"=0D=0A+=09=09 (("\\=
$\\(LIB_HEADER_DIRS\\) -fPIC" all)=0D=0A+=09=09 (string-append all " =
" ldflags)))) #t))=0D=0A+=09 (add-before 'build 'add-vtk-include-path=0D=
=0A+=09 (lambda _=0D=0A+=09 (let* ((vtk-version #$(version-ma=
jor+minor=0D=0A+=09=09=09=09 (package-version vtk)))=0D=0A+=09=09 =
(vtk-inc (string-append #$vtk "/include/vtk-" vtk-version))=0D=0A+=09=
=09 (vtk-inc-flag (string-append "-I" vtk-inc)))=0D=0A+=09 =
(substitute* "wmake/rules/linux64Gcc/c++"=0D=0A+=09=09 (("\\$\\(LIB_H=
EADER_DIRS\\)" all)=0D=0A+=09=09 (string-append all " " vtk-inc-flag =
" "))))=0D=0A+=09 #t))=0D=0A+=09 (delete 'configure) ;no config=
ure phase=0D=0A+=09 (replace 'build=0D=0A+=09 (lambda _=0D=0A+=09=
;; compile OpenFOAM libraries and applications=0D=0A+=09 (=
invoke "bash" "-c"=0D=0A+=09=09 (format #f=0D=0A+=09=09=09 =
"source ./etc/bashrc && ./Allwmake -j~a"=0D=0A+=09=09=09 (parallel=
-job-count)))))=0D=0A+=09 (add-after 'build 'cleanup=0D=0A+=09 ;;=
Avoid unnecessary, voluminous object and dep files.=0D=0A+=09 (lamb=
da _=0D=0A+=09 (when (file-exists=3F "platforms/linux64GccDPInt32O=
pt/src")=0D=0A+=09 (delete-file-recursively=0D=0A+=09 =
"platforms/linux64GccDPInt32Opt/src"))=0D=0A+=09 (when (file-exist=
s=3F=0D=0A+=09=09 "platforms/linux64GccDPInt32OptOPENMPI")=0D=0A+=09=
(delete-file-recursively=0D=0A+=09 "platforms/linux64=
GccDPInt32OptOPENMPI"))=0D=0A+=09 (for-each delete-file=0D=0A+=09=09=
(find-files "." "\\.o$"))=0D=0A+ ;; Remove spuri=
ous files in src tree=0D=0A+ (invoke "bash" "-c" "source .=
/etc/bashrc && wclean all")=0D=0A+ #t))=0D=0A+=09 (repl=
ace 'check=0D=0A+=09 (lambda* (#:key tests=3F #:allow-other-keys)=0D=
=0A+=09 (when tests=3F=0D=0A+=09 (when (file-exists=3F "t=
est")=0D=0A+=09=09 (with-directory-excursion "test"=0D=0A+=09=09 =
(invoke "bash" "-c"=0D=0A+=09=09=09 (format #f=0D=0A+=09=09=09=09 =
"source ../etc/bashrc && ./Allrun -j~a"=0D=0A+=09=09=09=09 (paral=
lel-job-count)))=0D=0A+ ;; cleanup=0D=0A+ =
(invoke "bash" "-c"=0D=0A+=09=09=09 "source ../etc/bashrc=
&& ./Allclean")))=0D=0A+=09 ;; too many tutorials are failing=0D=
=0A+=09 ;; (with-directory-excursion "tutorials"=0D=0A+=09 =
;; (invoke "bash" "-c" "source ../etc/bashrc && ./Alltest"))=0D=0A+=09=
) #t))=0D=0A+=09 (add-before 'install 'set-paths=0D=0A+=09 =
(lambda _=0D=0A+=09 (let ((install-path (string-append #$outpu=
t=0D=0A+=09=09=09=09=09 "/share/OpenFOAM-" #$version)))=0D=0A+=09=
(substitute* "etc/bashrc"=0D=0A+=09=09 (("^\\[ \"\\$BASH\".*=
$") "")=0D=0A+=09=09 (("^export FOAM_INST_DIR=3D\\$\\(cd.*$")=0D=0A+=09=
=09 (string-append "export FOAM_INST_DIR=3D" install-path "\n"))=0D=0A=
+=09=09 (("^export FOAM_INST_DIR=3D\\$HOME.*$") "")))=0D=0A+=09 =
#t))=0D=0A+=09 (replace 'install=0D=0A+=09 (lambda* (#:key outpu=
ts inputs #:allow-other-keys)=0D=0A+=09 (let ((install-path (strin=
g-append #$output=0D=0A+=09=09=09=09=09 "/share/OpenFOAM-" #$ve=
rsion)))=0D=0A+=09 (mkdir-p install-path) ;create install direct=
ory=0D=0A+=09 ;; move contents of build directory to install dir=
ectory=0D=0A+=09 (copy-recursively "." install-path))))=0D=0A+=09=
(add-after 'install 'add-symbolic-link=0D=0A+=09 (lambda _=0D=0A=
+=09 (let* ((bin (string-append #$output "/bin"))=0D=0A+=09=09 =
(lib (string-append #$output "/lib"))=0D=0A+=09=09 (openfoam (st=
ring-append #$output=0D=0A+=09=09=09=09=09 "/share/OpenFOAM-" #$ve=
rsion))=0D=0A+=09=09 (build-bin (string-append openfoam=0D=0A+=09=09=
=09=09=09 "/platforms/linux64GccDPInt32Opt/bin"))=0D=0A+=09=09 =
(build-lib (string-append openfoam=0D=0A+=09=09=09=09=09 "/pl=
atforms/linux64GccDPInt32Opt/lib"))=0D=0A+=09=09 (foam-bin (string-=
append openfoam "/bin")))=0D=0A+=09 ;; add symbolic links in sta=
ndard 'bin' directory=0D=0A+=09 (mkdir-p bin)=0D=0A+=09 =
(for-each (lambda (file)=0D=0A+=09=09=09 (unless (member file=0D=0A=
+=09=09=09=09=09 '("." ".."))=0D=0A+=09=09=09 (symlink (strin=
g-append build-bin "/"=0D=0A+=09=09=09=09=09=09 file)=0D=0A+=09=09=
=09=09 (string-append bin "/" file))))=0D=0A+=09=09=09 (scandi=
r build-bin))=0D=0A+=09 (for-each (lambda (file)=0D=0A+=09=09=09=
(unless (member file=0D=0A+=09=09=09=09=09 '("." ".."))=0D=0A+=
=09=09=09 (symlink (string-append foam-bin "/"=0D=0A+=09=09=09=09=09=
=09 file)=0D=0A+=09=09=09=09 (string-append bin "/" file))=
))=0D=0A+=09=09=09 (scandir foam-bin))=0D=0A+=09 ;; add symbo=
lic link for standard 'lib' directory=0D=0A+=09 (symlink build-l=
ib lib)) #t)))))=0D=0A+ ;; Note:=0D=0A+ ;; Tutorial files are i=
nstalled read-only in /gnu/store.=0D=0A+ ;; To allow write permissio=
ns on files copied from the store a=0D=0A+ ;; 'chmod' step is needed=
before running the applications. For=0D=0A+ ;; example, from a use=
r's login:=0D=0A+ ;; $ source $WM_PROJECT_DIR/etc/bashrc=0D=0A+ =
;; $ mkdir -p $FOAM_RUN=0D=0A+ ;; $ cd $FOAM_RUN=0D=0A+ ;; $ c=
p -r $FOAM_TUTORIALS/incompressible/simpleFoam/pitzDaily .=0D=0A+ ;;=
$ cd pitzDaily=0D=0A+ ;; $ chmod -R u+w .=0D=0A+ ;; $ blockMes=
h=0D=0A+ (synopsis synopsis)=0D=0A+ (description=0D=0A+ "=
OpenFOAM provides a set of solvers and methods for tackling=0D=0A+problem=
s in the field of Computational Fluid Dynamics (CFD). It is written in=0D=
=0A+C++. Governing equations such as the Navier-Stokes equations can be =
solved in=0D=0A+integral form. Physical processes such as phase change, =
droplet transport and=0D=0A+chemical reaction can be modelled. Numerical=
methods are included to deal with=0D=0A+sharp gradients, such as those e=
ncountered in flows with shock waves and flows=0D=0A+with gas/liquid inte=
rfaces. Large problems may be split into smaller, connected=0D=0A+proble=
ms for efficient solution on parallel systems.")=0D=0A+ (license lic=
ense:gpl3+)=0D=0A+ (home-page home-page))))=0D=0A+=0D=0A (define-pub=
lic open-simulation-interface=0D=0A (package=0D=0A (name "open-simu=
lation-interface")=0D=0A--=20=0D=0A2.41.0=0D=0A=0D=0A
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH 2/3] gnu: openfoam-org: Update to 11.
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* gnu/packages/simulation.scm (openfoam-org): Update to 11. Use=0D=0Aopen=
foam-package factory function to create package.=0D=0A---=0D=0A gnu/packa=
ges/simulation.scm | 364 ++++++------------------------------=0D=0A 1 fil=
e changed, 54 insertions(+), 310 deletions(-)=0D=0A=0D=0Adiff --git a/gnu=
/packages/simulation.scm b/gnu/packages/simulation.scm=0D=0Aindex 0d52434=
fac..3db58813d3 100644=0D=0A--- a/gnu/packages/simulation.scm=0D=0A+++ b/=
gnu/packages/simulation.scm=0D=0A@@ -87,316 +87,6 @@ (define-module (gnu =
packages simulation)=0D=0A #:use-module (ice-9 regex)=0D=0A #:use-mod=
ule (srfi srfi-1))=0D=0A=20=0D=0A-(define-public openfoam-org=0D=0A- (pa=
ckage=0D=0A- (name "openfoam-org")=0D=0A- (version "10.20230119")=0D=
=0A- (source (origin=0D=0A- (method url-fetch)=0D=0A- =
(uri (string-append "https://github.com/OpenFOAM/OpenFOAM-"=0D=0A=
- (version-major version) "/archive/"=0D=
=0A- (second (string-split version #\.))=
=0D=0A- ".tar.gz"))=0D=0A- =
(sha256=0D=0A- (base32=0D=0A- "1aw2vb5s7frg9=
42ngd5x5x2dm67liyg6czff56qi567mshccpy46"))=0D=0A- (modules '=
((guix build utils)))=0D=0A- (snippet `(begin=0D=0A- =
;; patch shell paths=0D=0A- (s=
ubstitute* (list "wmake/src/Makefile"=0D=0A- =
"wmake/makefiles/general")=0D=0A- =
(("/bin/sh")=0D=0A- "sh"))=0D=0A- =
(substitute* "etc/bashrc"=0D=0A- =
;; only go back one folder level=0D=0A- (=
("\\$\\(dirname \\$\\{BASH_SOURCE:-\\$0\\}\\)/../..")=0D=0A- =
"$(dirname ${BASH_SOURCE:-$0})/..")=0D=0A- =
;; do not use openfoam folder convention=0D=0A- =
(("^export WM_PROJECT_DIR=3D.*$")=0D=0A- =
(string-append=0D=0A- "export WM_=
PROJECT_DIR=3D$WM_PROJECT_INST_DIR\n"))=0D=0A- =
;; do not source bash_completion (gives error)=0D=0A- =
(("^.*bash_completion.*$" all)=0D=0A- =
(string-append "#" all))=0D=0A- ;; set same =
version as guix package=0D=0A- (("^export WM_P=
ROJECT_VERSION=3D.*$")=0D=0A- (string-append =
"export WM_PROJECT_VERSION=3D"=0D=0A- =
,version "\n")))=0D=0A- ;; add expand fl=
ag to RunFunctions=0D=0A- (substitute* "bin/tool=
s/RunFunctions"=0D=0A- (("foamDictionary (.*)"=
all args)=0D=0A- (string-append "foamDiction=
ary -expand " args)))=0D=0A- ;; disable failing =
test=0D=0A- (substitute* "test/postProcessing/ch=
annel/Allrun"=0D=0A- (("^.*getApplication.*$" =
all)=0D=0A- (string-append "#" all "\n"))))))=
)=0D=0A- (build-system gnu-build-system)=0D=0A- (inputs (list boost=
=0D=0A- cgal=0D=0A- git=0D=0A- =
gmp=0D=0A- libxt=0D=0A- metis=0D=
=0A- mpfr=0D=0A- ncurses=0D=0A- =
openmpi=0D=0A- openssh=0D=0A- =
paraview=0D=0A- pt-scotch32=0D=0A- rea=
dline=0D=0A- zlib))=0D=0A- (native-inputs (list bison=
=0D=0A- flex=0D=0A- ;; pa=
raview plugin dependencies=0D=0A- cli11=0D=0A- =
cmake-minimal=0D=0A- cgns=0D=
=0A- curl=0D=0A- double-c=
onversion=0D=0A- eigen=0D=0A- =
expat=0D=0A- ffmpeg=0D=0A- =
fmt=0D=0A- freetype=0D=0A- =
gdal=0D=0A- gl2ps=0D=0A- =
glew=0D=0A- gmsh=0D=0A- =
hdf5=0D=0A- jsoncpp=0D=0A- =
libjpeg-turbo=0D=0A- libogg=0D=0A- =
libpng=0D=0A- libharu=0D=0A- =
libtheora=0D=0A- libtiff=0D=
=0A- libx11=0D=0A- libxml=
2=0D=0A- lz4=0D=0A- netcd=
f=0D=0A- nlohmann-json=0D=0A- =
proj=0D=0A- protobuf=0D=0A- =
pugixml=0D=0A- python=0D=0A- =
python-mpi4py=0D=0A- qtbase-5=0D=0A- =
qtsvg-5=0D=0A- qttools-5=0D=
=0A- qtwebengine-5=0D=0A- =
qtxmlpatterns=0D=0A- utfcpp=0D=0A- =
vtk=0D=0A- xz))=0D=0A- (propagated-=
inputs (list gnuplot))=0D=0A- (outputs '("debug" ;~60MB=0D=0A- =
"out"))=0D=0A- (arguments=0D=0A- (list=0D=0A- ;; Execu=
table files and shared libraries are located in the 'platforms'=0D=0A- =
;; subdirectory.=0D=0A- #:strip-directories=0D=0A- #~(list "=
share/OpenFOAM/platforms/linux64GccDPInt32Opt/bin"=0D=0A- "s=
hare/OpenFOAM/platforms/linux64GccDPInt32Opt/lib")=0D=0A-=0D=0A- #:m=
odules=0D=0A- '((ice-9 ftw)=0D=0A- (ice-9 regex)=0D=0A- =
(ice-9 string-fun)=0D=0A- (srfi srfi-1)=0D=0A- (guix buil=
d gnu-build-system)=0D=0A- (guix build utils))=0D=0A-=0D=0A- =
#:phases=0D=0A- #~(modify-phases %standard-phases=0D=0A- (a=
dd-before 'build 'patch-HOME-path=0D=0A- (lambda _=0D=0A- =
(setenv "HOME" "/tmp") #t))=0D=0A- (add-before 'build '=
patch-scotch=0D=0A- (lambda _=0D=0A- (substitute*=
"etc/config.sh/scotch"=0D=0A- (("^export SCOTCH_VERSION=3D=
scotch_.*$")=0D=0A- (string-append "export SCOTCH_VERSION=
=3Dscotch_"=0D=0A- #$(package-version pt-s=
cotch32) "\n"))=0D=0A- (("^export SCOTCH_ARCH_PATH=3D.*$")=
=0D=0A- (string-append "export SCOTCH_ARCH_PATH=3D"=0D=0A=
- (assoc-ref %build-inputs "pt-scotch32")=0D=
=0A- "\n"))) #t))=0D=0A- (add-bef=
ore 'build 'patch-mpi=0D=0A- (lambda _=0D=0A- (le=
t* ((mpi-path (assoc-ref %build-inputs "openmpi"))=0D=0A- =
(mpi-version #$(package-version openmpi)))=0D=0A- ;; =
specify openmpi type=0D=0A- (substitute* "etc/bashrc"=0D=0A=
- (("WM_MPLIB=3DSYSTEMOPENMPI")=0D=0A- =
"WM_MPLIB=3DOPENMPI"))=0D=0A- (substitute* "etc/config.sh=
/mpi"=0D=0A- (("export FOAM_MPI=3Dopenmpi-.*$")=0D=0A- =
(string-append "export FOAM_MPI=3Dopenmpi-"=0D=0A- =
mpi-version "\n"))=0D=0A- ((=
"export MPI_ARCH_PATH=3D.*\\$FOAM_MPI.*$")=0D=0A- (stri=
ng-append "export MPI_ARCH_PATH=3D" mpi-path=0D=0A- =
"\n")))) #t))=0D=0A- (add-before 'build 'patch-parav=
iew=0D=0A- (lambda _=0D=0A- (substitute* "etc/con=
fig.sh/paraview"=0D=0A- (("^export ParaView_VERSION=3D.*$"=
)=0D=0A- (string-append "export ParaView_VERSION=3D"=0D=0A=
- #$(package-version paraview) "\n"))=0D=0A=
- (("^export ParaView_DIR=3D.*$")=0D=0A- (=
string-append "export ParaView_DIR=3D"=0D=0A- =
(assoc-ref %build-inputs "paraview")=0D=0A- =
"\n"))) #t))=0D=0A- (add-before 'build 'add-rpaths=0D=0A- =
(lambda _=0D=0A- (letrec* ((libraries '("boost" "=
cgal"=0D=0A- "gmp"=0D=0A- =
"metis"=0D=0A- =
"mpfr"=0D=0A- "pt-scotch32"=0D=0A-=
"openmpi"=0D=0A- =
"zlib"=0D=0A- "parav=
iew"))=0D=0A- (rpaths=0D=0A- =
(fold-right (lambda (library rpaths)=0D=0A- =
(string-append rpaths=0D=0A- =
"-rpath=3D"=0D=0A- =
(assoc-ref=0D=0A- =
%build-inputs library)=0D=0A- =
"/lib,")) "" libraries))=0D=0A- =
(openfoam-lib=0D=0A- (string-append #$=
output=0D=0A- "/share/OpenFOAM/pla=
tforms/linux64GccDPInt32Opt/lib"))=0D=0A- (ldflags=
=0D=0A- (string-append "-Wl,"=0D=0A- =
rpaths=0D=0A- =
"-rpath=3D"=0D=0A- openfoam=
-lib=0D=0A- ","=0D=0A- =
"-rpath=3D"=0D=0A- =
openfoam-lib=0D=0A- "=
/dummy,"=0D=0A- "-rpath=3D"=0D=0A-=
openfoam-lib=0D=0A- =
"/paraview-"=0D=0A- =
#$(version-major+minor (package-version=0D=0A- =
paraview)))))=0D=0A- =
(substitute* "wmake/rules/linux64Gcc/c++"=0D=0A- =
(("\\$\\(LIB_HEADER_DIRS\\) -fPIC" all)=0D=0A- (st=
ring-append all " " ldflags)))) #t))=0D=0A- (add-before 'build '=
add-vtk-include-path=0D=0A- (lambda _=0D=0A- (let=
* ((vtk-version #$(version-major+minor=0D=0A- =
(package-version vtk)))=0D=0A- (vtk-root (as=
soc-ref %build-inputs "vtk"))=0D=0A- (vtk-inc (string=
-append vtk-root "/include/vtk-" vtk-version))=0D=0A- =
(vtk-inc-flag (string-append "-I" vtk-inc)))=0D=0A- (subs=
titute* "wmake/rules/linux64Gcc/c++"=0D=0A- (("\\$\\(LIB=
_HEADER_DIRS\\)" all)=0D=0A- (string-append all " " vtk=
-inc-flag " "))))=0D=0A- #t))=0D=0A- (delete 'confi=
gure) ;no configure phase=0D=0A- (replace 'build=0D=0A- =
(lambda _=0D=0A- ;; compile OpenFOAM libraries and applic=
ations=0D=0A- (invoke "bash" "-c"=0D=0A- =
(format #f=0D=0A- "source ./etc/bashrc && =
=2E/Allwmake -j~a"=0D=0A- (parallel-job-coun=
t)))))=0D=0A- (add-after 'build 'cleanup=0D=0A- ;; Av=
oid unnecessary, voluminous object and dep files.=0D=0A- (lamb=
da _=0D=0A- (when (file-exists=3F "platforms/linux64GccDPInt=
32Opt/src")=0D=0A- (delete-file-recursively=0D=0A- =
"platforms/linux64GccDPInt32Opt/src"))=0D=0A- (when=
(file-exists=3F=0D=0A- "platforms/linux64GccDPInt32O=
ptOPENMPI")=0D=0A- (delete-file-recursively=0D=0A- =
"platforms/linux64GccDPInt32OptOPENMPI"))=0D=0A- (f=
or-each delete-file=0D=0A- (find-files "." "\\.o$"=
)) #t))=0D=0A- (replace 'check=0D=0A- (lambda* (#:key=
tests=3F #:allow-other-keys)=0D=0A- (when tests=3F=0D=0A- =
(when (file-exists=3F "test")=0D=0A- (with=
-directory-excursion "test"=0D=0A- (invoke "bash" "-c"=
=0D=0A- (format #f=0D=0A- =
"source ../etc/bashrc && ./Allrun -j~a"=0D=0A- =
(parallel-job-count)))))=0D=0A- ;;=
too many tutorials are failing=0D=0A- ;; (with-directory-=
excursion "tutorials"=0D=0A- ;; (invoke "bash" "-c" "sourc=
e ../etc/bashrc && ./Alltest"))=0D=0A- ) #t))=0D=0A- =
(replace 'install=0D=0A- (lambda _=0D=0A- (le=
t ((install-dir (string-append #$output=0D=0A- =
"/share/OpenFOAM")))=0D=0A- (mkdir-p =
install-dir) ;create install directory=0D=0A- ;; move cont=
ents of build directory to install directory=0D=0A- (copy-=
recursively "." install-dir))))=0D=0A- (add-after 'install 'add-=
symbolic-link=0D=0A- (lambda _=0D=0A- (let* ((bin=
(string-append #$output "/bin"))=0D=0A- (lib (string=
-append #$output "/lib"))=0D=0A- (openfoam (string-ap=
pend #$output=0D=0A- "/share=
/OpenFOAM"))=0D=0A- (build-bin (string-append openfoa=
m=0D=0A- "/platforms/linux6=
4GccDPInt32Opt/bin"))=0D=0A- (build-lib (string-appen=
d openfoam=0D=0A- "/platfor=
ms/linux64GccDPInt32Opt/lib"))=0D=0A- (foam-bin (stri=
ng-append openfoam "/bin")))=0D=0A- ;; add symbolic links =
in standard 'bin' directory=0D=0A- (mkdir-p bin)=0D=0A- =
(for-each (lambda (file)=0D=0A- (=
unless (member file=0D=0A- '("=
=2E" ".."))=0D=0A- (symlink (string-append b=
uild-bin "/"=0D=0A- =
file)=0D=0A- (string-append bin "/"=
file))))=0D=0A- (scandir build-bin))=0D=0A- =
(for-each (lambda (file)=0D=0A- (u=
nless (member file=0D=0A- '(".=
" ".."))=0D=0A- (symlink (string-append foam=
-bin "/"=0D=0A- file=
)=0D=0A- (string-append bin "/" fil=
e))))=0D=0A- (scandir foam-bin))=0D=0A- =
;; add symbolic link for standard 'lib' directory=0D=0A- =
(symlink build-lib lib)) #t)))))=0D=0A- (native-search-paths=0D=0A=
- (list (search-path-specification=0D=0A- (variable "WM_PR=
OJECT_DIR")=0D=0A- (separator #f)=0D=0A- (files '("=
share/OpenFOAM")))))=0D=0A- ;; Note:=0D=0A- ;; Tutorial files are i=
nstalled read-only in /gnu/store.=0D=0A- ;; To allow write permissions=
on files copied from the store a=0D=0A- ;; 'chmod' step is needed bef=
ore running the applications. For=0D=0A- ;; example, from a user's lo=
gin:=0D=0A- ;; $ source $(dirname $(which blockMesh))/../../../etc/bas=
hrc=0D=0A- ;; $ mkdir -p $FOAM_RUN=0D=0A- ;; $ cd $FOAM_RUN=0D=0A- =
;; $ cp -r $FOAM_TUTORIALS/incompressible/simpleFoam/pitzDaily .=0D=0A=
- ;; $ cd pitzDaily=0D=0A- ;; $ chmod -R u+w .=0D=0A- ;; $ block=
Mesh=0D=0A- (synopsis "Framework for numerical simulation of fluid flo=
w")=0D=0A- (description=0D=0A- "OpenFOAM provides a set of solvers=
and methods for tackling=0D=0A-problems in the field of Computational Fl=
uid Dynamics (CFD). It is written in=0D=0A-C++. Governing equations suc=
h as the Navier-Stokes equations can be solved in=0D=0A-integral form. P=
hysical processes such as phase change, droplet transport and=0D=0A-chemi=
cal reaction can be modelled. Numerical methods are included to deal wit=
h=0D=0A-sharp gradients, such as those encountered in flows with shock wa=
ves and flows=0D=0A-with gas/liquid interfaces. Large problems may be sp=
lit into smaller, connected=0D=0A-problems for efficient solution on para=
llel systems.")=0D=0A- (license license:gpl3+)=0D=0A- (home-page "h=
ttps://openfoam.org")))=0D=0A-=0D=0A-(define-public openfoam=0D=0A- (dep=
recated-package "openfoam" openfoam-org))=0D=0A-=0D=0A (define-public ope=
nfoam-com=0D=0A ;; This is a fork of 'openfoam-org', maintained separat=
ely.=0D=0A (package=0D=0A@@ -726,6 +416,60 @@ (define* (openfoam-packag=
e source version name home-page synopsis)=0D=0A (license license:gp=
l3+)=0D=0A (home-page home-page))))=0D=0A=20=0D=0A+(define-public o=
penfoam-org=0D=0A+ (let* ((version "11")=0D=0A+ (name "openfoam-=
org")=0D=0A+ (source (origin=0D=0A+ (method url=
-fetch)=0D=0A+ (uri (string-append "https://github.com/=
OpenFOAM/OpenFOAM-"=0D=0A+ (version=
-major version)=0D=0A+ "/archive/"=0D=
=0A+ "version-"=0D=0A+ =
(version-major version)=0D=0A+ =
".tar.gz"))=0D=0A+ (sha256 (base3=
2=0D=0A+ "1h70a5ni2psx7bcx2xg6aqraj2kkbfn8mflh=
2akbp6k9mmpgih7b"))=0D=0A+ (modules '((guix build utils=
)))=0D=0A+ (snippet `(begin=0D=0A+ =
;; patch shell paths=0D=0A+ (subs=
titute* (list "wmake/src/Makefile"=0D=0A+ =
"wmake/makefiles/general")=0D=0A+ =
(("/bin/sh")=0D=0A+ "sh"))=0D=
=0A+ (substitute* "etc/bashrc"=0D=0A+ =
;; only go back one folder level=0D=0A+ =
(("\\$\\(dirname \\$\\{BASH_SOURCE:-\\$0\\}\\)/=
=2E./..")=0D=0A+ "$(dirname ${BASH_SOURC=
E:-$0})/..")=0D=0A+ ;; do not use openfoa=
m folder convention=0D=0A+ (("^export WM_=
PROJECT_DIR=3D.*$")=0D=0A+ (string-appen=
d=0D=0A+ "export WM_PROJECT_DIR=3D$WM_P=
ROJECT_INST_DIR=0D=0A+"))=0D=0A+ ;; do no=
t source bash_completion (gives error)=0D=0A+ =
(("^.*bash_completion.*$" all)=0D=0A+ =
(string-append "#" all))=0D=0A+ ;; set=
same version as guix package=0D=0A+ (("^=
export WM_PROJECT_VERSION=3D.*$")=0D=0A+ =
(string-append "export WM_PROJECT_VERSION=3D"=0D=0A+ =
,version "\n")))=0D=0A+ =
;; add expand flag to RunFunctions=0D=0A+ =
(substitute* "bin/tools/RunFunctions"=0D=0A+ =
(("foamDictionary (.*)" all args)=0D=0A+ =
(string-append "foamDictionary -expand "=0D=0A+ =
args)))=0D=0A+ =
;; disable failing test=0D=0A+ (su=
bstitute* "test/postProcessing/channel/Allrun"=0D=0A+ =
(("^.*getApplication.*$" all)=0D=0A+ =
(string-append "#" all "\n")))))))=0D=0A+ (home-page "h=
ttps://openfoam.org")=0D=0A+ (synopsis "Framework for numerical s=
imulation of fluid flow")=0D=0A+ (template (openfoam-package sour=
ce version name home-page synopsis)))=0D=0A+ (package=0D=0A+ (inh=
erit template))))=0D=0A+=0D=0A+(define-public openfoam=0D=0A+ (deprecate=
d-package "openfoam" openfoam-org))=0D=0A+=0D=0A (define-public open-simu=
lation-interface=0D=0A (package=0D=0A (name "open-simulation-interf=
ace")=0D=0A--=20=0D=0A2.41.0=0D=0A=0D=0A
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH 3/3] gnu: openfoam-com: Update to 2306.
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* gnu/packages/simulation (openfoam-com): Update to 2306. Use openfoam-pa=
ckage=0D=0Afactory function to create package.=0D=0A---=0D=0A gnu/package=
s/simulation.scm | 70 +++++++++++++++++++------------------=0D=0A 1 file =
changed, 36 insertions(+), 34 deletions(-)=0D=0A=0D=0Adiff --git a/gnu/pa=
ckages/simulation.scm b/gnu/packages/simulation.scm=0D=0Aindex 3db58813d3=
=2E.7dd6bd3141 100644=0D=0A--- a/gnu/packages/simulation.scm=0D=0A+++ b/g=
nu/packages/simulation.scm=0D=0A@@ -87,40 +87,6 @@ (define-module (gnu pa=
ckages simulation)=0D=0A #:use-module (ice-9 regex)=0D=0A #:use-modul=
e (srfi srfi-1))=0D=0A=20=0D=0A-(define-public openfoam-com=0D=0A- ;; Th=
is is a fork of 'openfoam-org', maintained separately.=0D=0A- (package=0D=
=0A- (inherit openfoam-org)=0D=0A- (name "openfoam-com")=0D=0A- =
(version "2212")=0D=0A- (source (origin=0D=0A- (method ur=
l-fetch)=0D=0A- (uri (string-append "https://develop.openfoa=
m.com"=0D=0A- "/Development/openfoam/-/a=
rchive/OpenFOAM-v"=0D=0A- version=0D=0A-=
"/openfoam-OpenFOAM-v"=0D=0A- =
version=0D=0A- "=
=2Etar.gz"))=0D=0A- (sha256=0D=0A- (base32=0D=0A=
- "0i9039hfz9gvgymkdjhjvvn5500zha3cpdbpqrzfrfi8lbz10is2"))=
=0D=0A- (modules '((guix build utils)))=0D=0A- =
(snippet `(begin=0D=0A- (substitute* "etc/bashrc=
"=0D=0A- ;; set same version as guix package=0D=
=0A-=09=09=09 (("^export WM_PROJECT_VERSION=3D.*$")=0D=0A-=09=09=09 =
(string-append "export WM_PROJECT_VERSION=3D"=0D=0A-=09=09=09=09=09 =
,version "\n")))=0D=0A- ;; patch shell paths=0D=0A=
- (substitute* (list "src/OSspecific/POSIX/POSIX=
=2EC"=0D=0A- "wmake/src/Makef=
ile"=0D=0A- "wmake/makefiles/=
general"=0D=0A- "wmake/makefi=
les/info")=0D=0A- (("/bin/sh")=0D=0A- =
"sh"))))))=0D=0A- (synopsis "Framework for numeric=
al simulation of fluid flow (from openfoam.com)")=0D=0A- (home-page "h=
ttps://www.openfoam.com")))=0D=0A-=0D=0A (define* (openfoam-package sourc=
e version name home-page synopsis)=0D=0A (let* ((install-path (string-a=
ppend "share/OpenFOAM-" version))=0D=0A (paraview-version (versi=
on-major+minor (package-version paraview)))=0D=0A@@ -470,6 +436,42 @@ (de=
fine-public openfoam-org=0D=0A (define-public openfoam=0D=0A (deprecate=
d-package "openfoam" openfoam-org))=0D=0A=20=0D=0A+(define-public openfoa=
m-com=0D=0A+ ;; This is a fork of 'openfoam-org', maintained separately.=
=0D=0A+ (let* ((version "2306")=0D=0A+ (name "openfoam-com")=0D=0A=
+ (source (origin=0D=0A+ (method url-fetch)=0D=0A=
+ (uri (string-append "https://develop.openfoam.com"=0D=
=0A+ "/Development/openfoam/-/archi=
ve/OpenFOAM-v"=0D=0A+ version=0D=0A=
+ "/openfoam-OpenFOAM-v"=0D=0A+ =
version=0D=0A+ =
".tar.gz"))=0D=0A+ (sha256 (base32=0D=0A=
+ "0zlkp48vygl2a5cyl0mfpj8dsb5bffviq96rg3kws1l=
6ni40v7jr"))=0D=0A+ (modules '((guix build utils)))=0D=0A=
+ (snippet `(begin=0D=0A+ =
(substitute* "etc/bashrc"=0D=0A+ ;; set =
same version as guix package=0D=0A+ (("^e=
xport WM_PROJECT_VERSION=3D.*$")=0D=0A+ =
(string-append "export WM_PROJECT_VERSION=3D"=0D=0A+ =
,version "\n")))=0D=0A+ =
;; patch shell paths=0D=0A+ (subst=
itute* (list=0D=0A+ "src/OSsp=
ecific/POSIX/POSIX.C"=0D=0A+ =
"wmake/src/Makefile"=0D=0A+ "=
wmake/makefiles/general"=0D=0A+ =
"wmake/makefiles/info")=0D=0A+ (("/bin=
/sh")=0D=0A+ "sh"))))))=0D=0A+ (=
home-page "https://www.openfoam.com")=0D=0A+ (synopsis=0D=0A+ =
"Framework for numerical simulation of fluid flow (from openfoam.co=
m)")=0D=0A+ (template (openfoam-package source version name home-=
page synopsis)))=0D=0A+ (package=0D=0A+ (inherit template))))=0D=0A=
+=0D=0A (define-public open-simulation-interface=0D=0A (package=0D=0A =
(name "open-simulation-interface")=0D=0A--=20=0D=0A2.41.0=0D=0A=0D=0A
guix-patches@HIDDEN:bug#66262; Package guix-patches.
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Subject: [PATCH 1/3] gnu: Add openfoam-package.
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* gnu/packages/simulation.scm (openfoam-package): Add factory function to=
=0D=0Agenerate openfoam packages. Improve build tree clean up.=0D=0A---=0D=
=0A gnu/packages/simulation.scm | 295 +++++++++++++++++++++++++++++++++++=
+=0D=0A 1 file changed, 295 insertions(+)=0D=0A=0D=0Adiff --git a/gnu/pac=
kages/simulation.scm b/gnu/packages/simulation.scm=0D=0Aindex 1dd6dc63f7.=
=2E0d52434fac 100644=0D=0A--- a/gnu/packages/simulation.scm=0D=0A+++ b/gn=
u/packages/simulation.scm=0D=0A@@ -431,6 +431,301 @@ (define-public openf=
oam-com=0D=0A (synopsis "Framework for numerical simulation of fluid =
flow (from openfoam.com)")=0D=0A (home-page "https://www.openfoam.com=
")))=0D=0A=20=0D=0A+(define* (openfoam-package source version name home-p=
age synopsis)=0D=0A+ (let* ((install-path (string-append "share/OpenFOAM=
-" version))=0D=0A+ (paraview-version (version-major+minor (packa=
ge-version paraview)))=0D=0A+ (pv-plugin-path=0D=0A+ (st=
ring-append install-path=0D=0A+ "/platforms/linux=
64GccDPInt32Opt/lib/paraview-"=0D=0A+ paraview-ve=
rsion)))=0D=0A+ (package=0D=0A+ (name name)=0D=0A+ (version =
version)=0D=0A+ (source source)=0D=0A+ (build-system gnu-build-=
system)=0D=0A+ (native-search-paths=0D=0A+ (list (search-path-=
specification=0D=0A+=09 (variable "WM_PROJECT_DIR")=0D=0A+=09 (=
files `(,install-path)))=0D=0A+ ;; add PV_PLUGIN_PATH to LD_L=
IBRARY_PATH so paraview=0D=0A+ ;; finds the OpenFOAM PV plugi=
ns=0D=0A+ (search-path-specification=0D=0A+=09 (variable=
"LD_LIBRARY_PATH")=0D=0A+=09 (files `(,pv-plugin-path)))))=0D=0A+ =
(inputs (list boost=0D=0A+=09=09 cgal=0D=0A+=09=09 git=0D=0A+=09=
=09 gmp=0D=0A+=09=09 libxt=0D=0A+=09=09 metis=0D=0A+=09=09 mp=
fr=0D=0A+=09=09 ncurses=0D=0A+=09=09 openmpi=0D=0A+=09=09 openss=
h=0D=0A+=09=09 paraview=0D=0A+=09=09 pt-scotch32=0D=0A+=09=09 re=
adline=0D=0A+=09=09 scotch=0D=0A+=09=09 zlib))=0D=0A+ (native-=
inputs (list bison=0D=0A+=09=09 flex=0D=0A+=09=09 ;; =
paraview plugin dependencies=0D=0A+=09=09 cli11=0D=0A+=09=09 =
cmake-minimal=0D=0A+=09=09 cgns=0D=0A+=09=09 =
curl=0D=0A+=09=09 double-conversion=0D=0A+=09=09 eige=
n=0D=0A+=09=09 expat=0D=0A+=09=09 ffmpeg=0D=0A+=09=09=
fmt=0D=0A+=09=09 freetype=0D=0A+=09=09 gda=
l=0D=0A+=09=09 gl2ps=0D=0A+=09=09 glew=0D=0A+=09=09 =
gmsh=0D=0A+=09=09 hdf5=0D=0A+=09=09 jsoncpp=0D=
=0A+=09=09 libjpeg-turbo=0D=0A+=09=09 libogg=0D=0A+=09=
=09 libpng=0D=0A+=09=09 libharu=0D=0A+=09=09 =
libtheora=0D=0A+=09=09 libtiff=0D=0A+=09=09 libx11=0D=
=0A+=09=09 libxml2=0D=0A+=09=09 lz4=0D=0A+=09=09 =
netcdf=0D=0A+=09=09 nlohmann-json=0D=0A+=09=09 =
proj=0D=0A+=09=09 protobuf=0D=0A+=09=09 pugixml=0D=0A=
+=09=09 python=0D=0A+=09=09 python-mpi4py=0D=0A+=09=09=
qtbase-5=0D=0A+=09=09 qtsvg-5=0D=0A+=09=09 =
qttools-5=0D=0A+=09=09 qtwebengine-5=0D=0A+=09=09 qt=
xmlpatterns=0D=0A+=09=09 utfcpp=0D=0A+=09=09 vtk=0D=0A=
+=09=09 xz))=0D=0A+ (propagated-inputs (list gnuplot))=0D=0A=
+ (outputs '("debug" ;~60MB=0D=0A+=09 "out"))=0D=0A+ (a=
rguments=0D=0A+ (list=0D=0A+ ;; Executable files and shared =
libraries are located in the 'platforms'=0D=0A+ ;; subdirectory.=0D=
=0A+ #:strip-directories=0D=0A+ #~(list (string-append "Ope=
nFOAM-" #$version "/platforms/linux64GccDPInt32Opt/bin")=0D=0A+=09 =
(string-append "OpenFOAM-" #$version "/platforms/linux64GccDPInt32Opt/li=
b"))=0D=0A+=0D=0A+ #:modules=0D=0A+ '((ice-9 ftw)=0D=0A+ =
(ice-9 regex)=0D=0A+ (ice-9 string-fun)=0D=0A+ (=
srfi srfi-1)=0D=0A+ (guix build gnu-build-system)=0D=0A+ =
(guix build utils))=0D=0A+=0D=0A+ #:phases=0D=0A+ #~(modi=
fy-phases %standard-phases=0D=0A+=09 (add-before 'build 'patch-HOME-pa=
th=0D=0A+=09 (lambda _=0D=0A+=09 (setenv "HOME" "/tmp") #t))=0D=
=0A+=09 (add-before 'build 'patch-scotch=0D=0A+=09 (lambda _=0D=0A=
+=09 (substitute* "etc/config.sh/scotch"=0D=0A+=09 (("^ex=
port SCOTCH_VERSION=3Dscotch_.*$")=0D=0A+=09 (string-append "ex=
port SCOTCH_VERSION=3Dscotch_"=0D=0A+=09=09=09 #$(package-versio=
n pt-scotch32) "\n"))=0D=0A+=09 (("^export SCOTCH_ARCH_PATH=3D.*=
$")=0D=0A+=09 (string-append "export SCOTCH_ARCH_PATH=3D" #$pt-=
scotch32 "\n")))=0D=0A+=09 #t))=0D=0A+=09 (add-before 'build 'p=
atch-mpi=0D=0A+=09 (lambda _=0D=0A+=09 (let* ((mpi-version #$=
(package-version openmpi)))=0D=0A+=09 ;; specify openmpi type=0D=
=0A+=09 (substitute* "etc/bashrc"=0D=0A+=09=09 (("WM_MPLIB=3D=
SYSTEMOPENMPI")=0D=0A+=09=09 "WM_MPLIB=3DOPENMPI"))=0D=0A+=09 =
(substitute* "etc/config.sh/mpi"=0D=0A+=09=09 (("export FOAM_MPI=3Do=
penmpi-.*$")=0D=0A+=09=09 (string-append "export FOAM_MPI=3Dopenmpi-"=
=0D=0A+=09=09=09=09 mpi-version "\n"))=0D=0A+=09=09 (("export MPI_A=
RCH_PATH=3D.*\\$FOAM_MPI.*$")=0D=0A+=09=09 (string-append "export MPI=
_ARCH_PATH=3D" #$openmpi "\n"))))=0D=0A+=09 #t))=0D=0A+=09 (add=
-before 'build 'patch-paraview=0D=0A+=09 (lambda _=0D=0A+=09 =
(substitute* "etc/config.sh/paraview"=0D=0A+=09 (("^export ParaV=
iew_VERSION=3D.*$")=0D=0A+=09 (string-append "export ParaView_V=
ERSION=3D"=0D=0A+=09=09=09 #$(package-version paraview) "\n"))=0D=
=0A+=09 (("^export ParaView_DIR=3D.*$")=0D=0A+=09 (str=
ing-append "export ParaView_DIR=3D" #$paraview "\n"))=0D=0A+ =
(("export ParaView_GL=3Dmesa") "export ParaView_GL=3Dsystem"))=0D=0A=
+=09 #t))=0D=0A+=09 (add-before 'build 'add-rpaths=0D=0A+=09 =
(lambda _=0D=0A+=09 (letrec* ((libraries '("boost"=0D=0A+=09=09=
=09=09 "cgal"=0D=0A+=09=09=09=09 "gmp"=0D=0A+=09=09=09=09 =
"metis"=0D=0A+=09=09=09=09 "mpfr"=0D=0A+=09=09=09=09 "scot=
ch"=0D=0A+=09=09=09=09 "pt-scotch32"=0D=0A+ =09=09=09=09 "ope=
nmpi"=0D=0A+=09=09=09=09 "zlib"=0D=0A+=09=09=09=09 "paraview"=
))=0D=0A+=09=09 (rpaths=0D=0A+=09=09 (fold-right (lamb=
da (lib rpaths)=0D=0A+=09=09=09=09 (string-append rpaths=0D=0A+=09=
=09=09=09=09=09 "-rpath=3D"=0D=0A+=09=09=09=09=09=09 (assoc=
-ref %build-inputs lib)=0D=0A+=09=09=09=09=09=09 "/lib,")) "" libr=
aries))=0D=0A+=09=09 (openfoam-lib=0D=0A+=09=09 (strin=
g-append #$output=0D=0A+=09=09=09=09 "/share/OpenFOAM-" #$versio=
n=0D=0A+=09=09=09=09 "/platforms/linux64GccDPInt32Opt/lib"))=0D=0A=
+=09=09 (ldflags=0D=0A+=09=09 (string-append "-Wl,"=0D=
=0A+=09=09=09=09 rpaths=0D=0A+=09=09=09=09 "-rpath=3D"=0D=
=0A+=09=09=09=09 openfoam-lib=0D=0A+=09=09=09=09 ","=0D=
=0A+=09=09=09=09 "-rpath=3D"=0D=0A+=09=09=09=09 openfoa=
m-lib=0D=0A+=09=09=09=09 "/dummy,"=0D=0A+=09=09=09=09 "=
-rpath=3D"=0D=0A+=09=09=09=09 openfoam-lib=0D=0A+=09=09=09=09 =
"/paraview-"=0D=0A+=09=09=09=09 #$(version-major+minor (p=
ackage-version=0D=0A+=09=09=09=09=09=09=09 paraview)))))=0D=0A+=09=
(substitute* "wmake/rules/linux64Gcc/c++"=0D=0A+=09=09 (("\\=
$\\(LIB_HEADER_DIRS\\) -fPIC" all)=0D=0A+=09=09 (string-append all " =
" ldflags)))) #t))=0D=0A+=09 (add-before 'build 'add-vtk-include-path=0D=
=0A+=09 (lambda _=0D=0A+=09 (let* ((vtk-version #$(version-ma=
jor+minor=0D=0A+=09=09=09=09 (package-version vtk)))=0D=0A+=09=09 =
(vtk-inc (string-append #$vtk "/include/vtk-" vtk-version))=0D=0A+=09=
=09 (vtk-inc-flag (string-append "-I" vtk-inc)))=0D=0A+=09 =
(substitute* "wmake/rules/linux64Gcc/c++"=0D=0A+=09=09 (("\\$\\(LIB_H=
EADER_DIRS\\)" all)=0D=0A+=09=09 (string-append all " " vtk-inc-flag =
" "))))=0D=0A+=09 #t))=0D=0A+=09 (delete 'configure) ;no config=
ure phase=0D=0A+=09 (replace 'build=0D=0A+=09 (lambda _=0D=0A+=09=
;; compile OpenFOAM libraries and applications=0D=0A+=09 (=
invoke "bash" "-c"=0D=0A+=09=09 (format #f=0D=0A+=09=09=09 =
"source ./etc/bashrc && ./Allwmake -j~a"=0D=0A+=09=09=09 (parallel=
-job-count)))))=0D=0A+=09 (add-after 'build 'cleanup=0D=0A+=09 ;;=
Avoid unnecessary, voluminous object and dep files.=0D=0A+=09 (lamb=
da _=0D=0A+=09 (when (file-exists=3F "platforms/linux64GccDPInt32O=
pt/src")=0D=0A+=09 (delete-file-recursively=0D=0A+=09 =
"platforms/linux64GccDPInt32Opt/src"))=0D=0A+=09 (when (file-exist=
s=3F=0D=0A+=09=09 "platforms/linux64GccDPInt32OptOPENMPI")=0D=0A+=09=
(delete-file-recursively=0D=0A+=09 "platforms/linux64=
GccDPInt32OptOPENMPI"))=0D=0A+=09 (for-each delete-file=0D=0A+=09=09=
(find-files "." "\\.o$"))=0D=0A+ ;; Remove spuri=
ous files in src tree=0D=0A+ (invoke "bash" "-c" "source .=
/etc/bashrc && wclean all")=0D=0A+ #t))=0D=0A+=09 (repl=
ace 'check=0D=0A+=09 (lambda* (#:key tests=3F #:allow-other-keys)=0D=
=0A+=09 (when tests=3F=0D=0A+=09 (when (file-exists=3F "t=
est")=0D=0A+=09=09 (with-directory-excursion "test"=0D=0A+=09=09 =
(invoke "bash" "-c"=0D=0A+=09=09=09 (format #f=0D=0A+=09=09=09=09 =
"source ../etc/bashrc && ./Allrun -j~a"=0D=0A+=09=09=09=09 (paral=
lel-job-count)))=0D=0A+ ;; cleanup=0D=0A+ =
(invoke "bash" "-c"=0D=0A+=09=09=09 "source ../etc/bashrc=
&& ./Allclean")))=0D=0A+=09 ;; too many tutorials are failing=0D=
=0A+=09 ;; (with-directory-excursion "tutorials"=0D=0A+=09 =
;; (invoke "bash" "-c" "source ../etc/bashrc && ./Alltest"))=0D=0A+=09=
) #t))=0D=0A+=09 (add-before 'install 'set-paths=0D=0A+=09 =
(lambda _=0D=0A+=09 (let ((install-path (string-append #$outpu=
t=0D=0A+=09=09=09=09=09 "/share/OpenFOAM-" #$version)))=0D=0A+=09=
(substitute* "etc/bashrc"=0D=0A+=09=09 (("^\\[ \"\\$BASH\".*=
$") "")=0D=0A+=09=09 (("^export FOAM_INST_DIR=3D\\$\\(cd.*$")=0D=0A+=09=
=09 (string-append "export FOAM_INST_DIR=3D" install-path "\n"))=0D=0A=
+=09=09 (("^export FOAM_INST_DIR=3D\\$HOME.*$") "")))=0D=0A+=09 =
#t))=0D=0A+=09 (replace 'install=0D=0A+=09 (lambda* (#:key outpu=
ts inputs #:allow-other-keys)=0D=0A+=09 (let ((install-path (strin=
g-append #$output=0D=0A+=09=09=09=09=09 "/share/OpenFOAM-" #$ve=
rsion)))=0D=0A+=09 (mkdir-p install-path) ;create install direct=
ory=0D=0A+=09 ;; move contents of build directory to install dir=
ectory=0D=0A+=09 (copy-recursively "." install-path))))=0D=0A+=09=
(add-after 'install 'add-symbolic-link=0D=0A+=09 (lambda _=0D=0A=
+=09 (let* ((bin (string-append #$output "/bin"))=0D=0A+=09=09 =
(lib (string-append #$output "/lib"))=0D=0A+=09=09 (openfoam (st=
ring-append #$output=0D=0A+=09=09=09=09=09 "/share/OpenFOAM-" #$ve=
rsion))=0D=0A+=09=09 (build-bin (string-append openfoam=0D=0A+=09=09=
=09=09=09 "/platforms/linux64GccDPInt32Opt/bin"))=0D=0A+=09=09 =
(build-lib (string-append openfoam=0D=0A+=09=09=09=09=09 "/pl=
atforms/linux64GccDPInt32Opt/lib"))=0D=0A+=09=09 (foam-bin (string-=
append openfoam "/bin")))=0D=0A+=09 ;; add symbolic links in sta=
ndard 'bin' directory=0D=0A+=09 (mkdir-p bin)=0D=0A+=09 =
(for-each (lambda (file)=0D=0A+=09=09=09 (unless (member file=0D=0A=
+=09=09=09=09=09 '("." ".."))=0D=0A+=09=09=09 (symlink (strin=
g-append build-bin "/"=0D=0A+=09=09=09=09=09=09 file)=0D=0A+=09=09=
=09=09 (string-append bin "/" file))))=0D=0A+=09=09=09 (scandi=
r build-bin))=0D=0A+=09 (for-each (lambda (file)=0D=0A+=09=09=09=
(unless (member file=0D=0A+=09=09=09=09=09 '("." ".."))=0D=0A+=
=09=09=09 (symlink (string-append foam-bin "/"=0D=0A+=09=09=09=09=09=
=09 file)=0D=0A+=09=09=09=09 (string-append bin "/" file))=
))=0D=0A+=09=09=09 (scandir foam-bin))=0D=0A+=09 ;; add symbo=
lic link for standard 'lib' directory=0D=0A+=09 (symlink build-l=
ib lib)) #t)))))=0D=0A+ ;; Note:=0D=0A+ ;; Tutorial files are i=
nstalled read-only in /gnu/store.=0D=0A+ ;; To allow write permissio=
ns on files copied from the store a=0D=0A+ ;; 'chmod' step is needed=
before running the applications. For=0D=0A+ ;; example, from a use=
r's login:=0D=0A+ ;; $ source $WM_PROJECT_DIR/etc/bashrc=0D=0A+ =
;; $ mkdir -p $FOAM_RUN=0D=0A+ ;; $ cd $FOAM_RUN=0D=0A+ ;; $ c=
p -r $FOAM_TUTORIALS/incompressible/simpleFoam/pitzDaily .=0D=0A+ ;;=
$ cd pitzDaily=0D=0A+ ;; $ chmod -R u+w .=0D=0A+ ;; $ blockMes=
h=0D=0A+ (synopsis synopsis)=0D=0A+ (description=0D=0A+ "=
OpenFOAM provides a set of solvers and methods for tackling=0D=0A+problem=
s in the field of Computational Fluid Dynamics (CFD). It is written in=0D=
=0A+C++. Governing equations such as the Navier-Stokes equations can be =
solved in=0D=0A+integral form. Physical processes such as phase change, =
droplet transport and=0D=0A+chemical reaction can be modelled. Numerical=
methods are included to deal with=0D=0A+sharp gradients, such as those e=
ncountered in flows with shock waves and flows=0D=0A+with gas/liquid inte=
rfaces. Large problems may be split into smaller, connected=0D=0A+proble=
ms for efficient solution on parallel systems.")=0D=0A+ (license lic=
ense:gpl3+)=0D=0A+ (home-page home-page))))=0D=0A+=0D=0A (define-pub=
lic open-simulation-interface=0D=0A (package=0D=0A (name "open-simu=
lation-interface")=0D=0A--=20=0D=0A2.41.0=0D=0A=0D=0A
guix-patches@HIDDEN:bug#66262; Package guix-patches.
Full text available.Received: (at submit) by debbugs.gnu.org; 29 Sep 2023 09:01:16 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Fri Sep 29 05:01:16 2023 Received: from localhost ([127.0.0.1]:55129 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1qm9N6-0004DA-E4 for submit <at> debbugs.gnu.org; Fri, 29 Sep 2023 05:01:16 -0400 Received: from lists.gnu.org ([2001:470:142::17]:39776) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <0102018ae02b1a04-440a9320-f59f-4304-bf10-01dfb00717ca-000000@HIDDEN>) id 1qm9N2-0004Ct-0C for submit <at> debbugs.gnu.org; Fri, 29 Sep 2023 05:01:15 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <0102018ae02b1a04-440a9320-f59f-4304-bf10-01dfb00717ca-000000@HIDDEN>) id 1qm9Mf-0001q1-G7 for guix-patches@HIDDEN; Fri, 29 Sep 2023 05:00:50 -0400 Received: from a7-246.smtp-out.eu-west-1.amazonses.com ([54.240.7.246]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_CBC_SHA1:128) (Exim 4.90_1) (envelope-from <0102018ae02b1a04-440a9320-f59f-4304-bf10-01dfb00717ca-000000@HIDDEN>) id 1qm9MV-0008Cv-Lh for guix-patches@HIDDEN; Fri, 29 Sep 2023 05:00:49 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/simple; s=solmzk3ljecfoypi3q6x2mqs3bucnhjw; d=housseini.me; t=1695978035; h=Subject:From:To:Cc:Date:Mime-Version:Content-Type:Content-Transfer-Encoding:References:Message-Id; bh=iNWtpxvKEBowOCbCj5tePiPAwz1hBMWwe8OxqkSA/ho=; b=jR8EBV/qZTH2jd8T2nJEZYifbVCeFvonCcAsJ8tQEcNpZIMO8OJWrEVXOsjrwAfi YCH10l71WDtlcbklG1JOlJfzNG6NMmzLUY81YZDfY7e/l4nWy2PWcL1vpAKxn7yEAdv ZUPw4rHnOzEkkcXv1QwtZcXaZr9gBRX/o5orgL50= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/simple; s=shh3fegwg5fppqsuzphvschd53n6ihuv; d=amazonses.com; t=1695978035; h=Subject:From:To:Cc:Date:Mime-Version:Content-Type:Content-Transfer-Encoding:References:Message-Id:Feedback-ID; bh=iNWtpxvKEBowOCbCj5tePiPAwz1hBMWwe8OxqkSA/ho=; b=vU5zxZGWb33aBubUpDgQTisIAGGV2eoT5hwSzfpIi2MfP0lzoQnUK5W6+MsCefpz 02t3zyzjzbD602rxtB1TBXeGNnOITI4gVRthIk0rSvXTPDxt68p/4w1sDO+TU90M6NR Raj+SLobJjXTFUQeb4TiBatTYZ+LRkyPJR/N+y3w= Subject: [PATCH 0/3] Update openfoam and fix bugs From: =?UTF-8?Q?reza?= <reza@HIDDEN> To: =?UTF-8?Q?guix-patches=40gnu=2Eorg?= <guix-patches@HIDDEN> Date: Fri, 29 Sep 2023 09:00:35 +0000 Mime-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable References: <cover.1695977095.git.reza@HIDDEN> X-Mailer: Amazon WorkMail Thread-Index: AQHZ8rNo+fS4zZNERYy4L7/bc9dU1Q== Thread-Topic: [PATCH 0/3] Update openfoam and fix bugs X-Wm-Sent-Timestamp: 1695978034 X-Original-Mailer: git-send-email 2.41.0 Message-ID: <0102018ae02b1a04-440a9320-f59f-4304-bf10-01dfb00717ca-000000@HIDDEN> Feedback-ID: 1.eu-west-1.b24dn6frgCi6dh20skzbuMRr7UL8M6Soir/3ogtEjHQ=:AmazonSES X-SES-Outgoing: 2023.09.29-54.240.7.246 Received-SPF: pass client-ip=54.240.7.246; envelope-from=0102018ae02b1a04-440a9320-f59f-4304-bf10-01dfb00717ca-000000@HIDDEN; helo=a7-246.smtp-out.eu-west-1.amazonses.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 1.0 (+) X-Debbugs-Envelope-To: submit Cc: =?UTF-8?Q?reza?= <reza@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -0.0 (/) This patch series fixes a bug in openfoam-org which expects the source fo= lder=0D=0Aname to be in a specific format. It also uses now a factory fun= ction=0D=0Aopenfoam-package to generate the openfoam-org and openfoam-com= package because=0D=0Athe version string used in an inherited package is = fixed to version of the=0D=0Aparent package. The factory function now cle= ans the source tree which is=0D=0Aincorporated into the package making th= e build reproducible.=0D=0A=0D=0AThe packages openfoam-org and openfoam-c= om were also update to version 11 and=0D=0A2306 respectively.=0D=0A=0D=0A= Reza Housseini (3):=0D=0A gnu: Add openfoam-package.=0D=0A gnu: openfoa= m-org: Update to 11.=0D=0A gnu: openfoam-com: Update to 2306.=0D=0A=0D=0A= gnu/packages/simulation.scm | 691 +++++++++++++++++++-----------------=0D= =0A 1 file changed, 366 insertions(+), 325 deletions(-)=0D=0A=0D=0A=0D=0A= base-commit: b2c28de020483a52f0a4f118ea40da17c2c9e5a2=0D=0A--=20=0D=0A2.4= 1.0=0D=0A=0D=0A
reza <reza@HIDDEN>:guix-patches@HIDDEN.
Full text available.guix-patches@HIDDEN:bug#66262; Package guix-patches.
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