GNU bug report logs - #69736
[PATCH 0/7] Add toil

Message received at submit <at> debbugs.gnu.org:

Received: (at submit) by debbugs.gnu.org; 11 Mar 2024 18:12:24 +0000
From debbugs-submit-bounces <at> debbugs.gnu.org Mon Mar 11 14:12:24 2024
Received: from localhost ([127.0.0.1]:41237 helo=debbugs.gnu.org)
	by debbugs.gnu.org with esmtp (Exim 4.84_2)
	(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
	id 1rjk8N-0000vm-KL
	for submit <at> debbugs.gnu.org; Mon, 11 Mar 2024 14:12:23 -0400
Received: from lists.gnu.org ([209.51.188.17]:54492)
 by debbugs.gnu.org with esmtp (Exim 4.84_2)
 (envelope-from <arunisaac@HIDDEN>) id 1rjk8L-0000vd-HP
 for submit <at> debbugs.gnu.org; Mon, 11 Mar 2024 14:12:22 -0400
Received: from eggs.gnu.org ([2001:470:142:3::10])
 by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256)
 (Exim 4.90_1) (envelope-from <arunisaac@HIDDEN>)
 id 1rjk7l-0001cm-HE
 for guix-patches@HIDDEN; Mon, 11 Mar 2024 14:11:46 -0400
Received: from mugam.systemreboot.net ([139.59.75.54])
 by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256)
 (Exim 4.90_1) (envelope-from <arunisaac@HIDDEN>)
 id 1rjk7g-00054M-Uz
 for guix-patches@HIDDEN; Mon, 11 Mar 2024 14:11:45 -0400
DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed;
 d=systemreboot.net; s=default; h=Content-Transfer-Encoding:MIME-Version:
 Message-ID:Date:Subject:Cc:To:From:Sender:Reply-To:Content-Type:Content-ID:
 Content-Description:Resent-Date:Resent-From:Resent-Sender:Resent-To:Resent-Cc
 :Resent-Message-ID:In-Reply-To:References:List-Id:List-Help:List-Unsubscribe:
 List-Subscribe:List-Post:List-Owner:List-Archive;
 bh=JizUg2PTHzKguqbdRXiFFMylA1YhcnQByy/5VlEDi0Q=; b=AYdeZqF1wCjOz3DD2RZG4QMOfN
 tQ5W5VT9NwPmeXtIKhUUAiNuyFCwgnj6mH0PgPPdWBDHuDMPWyr3GyhWRA0rmzVbeMx2pfvNihRog
 etdt8v4LKIg5fZZm8/bD9xMpB1NphaFsC7Zdmwa23LBQR2chp5lT3+/6y3PatE2K5smGYWsTeEZ7E
 pbTQKtVIdhKdbbNtMvh44YqvAtZYyL33zSOhTFLzFdsDNPmVoRKpehqNZgeQjKMWxwbTB+qXWmOaZ
 IUArhflLzzO8mQ1DTlZ1B51EohzyfG5hnlUMuT/LeQabkJxxSvt3xcktXeGc7LkNau/d9lSRY1Qus
 uZaVndTw==;
Received: from [192.168.2.1] (port=57298 helo=localhost.localdomain)
 by systemreboot.net with esmtpsa (TLS1.3) tls
 TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384 (Exim 4.96.1)
 (envelope-from <arunisaac@HIDDEN>) id 1rjk5r-0007VG-0r;
 Mon, 11 Mar 2024 18:09:47 +0000
From: Arun Isaac <arunisaac@HIDDEN>
To: guix-patches@HIDDEN
Subject: [PATCH 0/7] Add toil
Date: Mon, 11 Mar 2024 18:11:18 +0000
Message-ID: <cover.1710180345.git.arunisaac@HIDDEN>
X-Mailer: git-send-email 2.41.0
MIME-Version: 1.0
Content-Transfer-Encoding: 8bit
Received-SPF: pass client-ip=139.59.75.54;
 envelope-from=arunisaac@HIDDEN; helo=mugam.systemreboot.net
X-Spam_score_int: -20
X-Spam_score: -2.1
X-Spam_bar: --
X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1,
 DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_NONE=0.001,
 SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no
X-Spam_action: no action
X-Spam-Score: -1.4 (-)
X-Debbugs-Envelope-To: submit
Cc: Arun Isaac <arunisaac@HIDDEN>
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: -2.4 (--)

This patchset adds toil.

The linter warns that there is a collision between different versions of
python-pyparsing. However, it is not possible to avoid that collision without
upgrading python-pyparsing. And, the python-pyparsing upgrade is very
complex. It requires rebuilding the world. It also introduces a dependency
cycle since the latest version of python-pyparsing switches to the
pyproject-build-system.

Arun Isaac (7):
  gnu: Add python-typing-extensions-4.10.
  gnu: Add python-pypubsub.
  gnu: Add python-addict.
  gnu: Add python-prefixed.
  gnu: Add python-enlighten.
  gnu: Add python-cwltool.
  gnu: Add python-toil.

 gnu/packages/bioinformatics.scm | 74 +++++++++++++++++++++++++++++
 gnu/packages/python-build.scm   | 13 ++++++
 gnu/packages/python-xyz.scm     | 83 +++++++++++++++++++++++++++++++++
 3 files changed, 170 insertions(+)


base-commit: 001dfb89579856b8695b33b59f484f36e313347f
-- 
2.41.0