X-Loop: help-debbugs@HIDDEN
Subject: bug#70064: Error when loading r-sf and other spatial packages (gdal related)
Resent-From: Javier Vaquero =?UTF-8?Q?Mart=C3=ADnez?= <javier_vm@HIDDEN>
Original-Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
Resent-CC: bug-guix@HIDDEN
Resent-Date: Fri, 29 Mar 2024 04:08:04 +0000
Resent-Message-ID: <handler.70064.B.17116852781019 <at> debbugs.gnu.org>
Resent-Sender: help-debbugs@HIDDEN
X-GNU-PR-Message: report 70064
X-GNU-PR-Package: guix
X-GNU-PR-Keywords:
To: 70064 <at> debbugs.gnu.org
X-Debbugs-Original-To: bug-guix@HIDDEN
Received: via spool by submit <at> debbugs.gnu.org id=B.17116852781019
(code B ref -1); Fri, 29 Mar 2024 04:08:04 +0000
Received: (at submit) by debbugs.gnu.org; 29 Mar 2024 04:07:58 +0000
Received: from localhost ([127.0.0.1]:41395 helo=debbugs.gnu.org)
by debbugs.gnu.org with esmtp (Exim 4.84_2)
(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
id 1rq3X3-0000GL-PH
for submit <at> debbugs.gnu.org; Fri, 29 Mar 2024 00:07:58 -0400
Received: from lists.gnu.org ([2001:470:142::17]:36770)
by debbugs.gnu.org with esmtp (Exim 4.84_2)
(envelope-from <javier_vm@HIDDEN>) id 1rptDt-00081y-Ht
for submit <at> debbugs.gnu.org; Thu, 28 Mar 2024 13:07:32 -0400
Received: from eggs.gnu.org ([2001:470:142:3::10])
by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256)
(Exim 4.90_1) (envelope-from <javier_vm@HIDDEN>) id 1rptDn-0001Fj-4q
for bug-guix@HIDDEN; Thu, 28 Mar 2024 13:07:23 -0400
Received: from mail-am0eur02on20701.outbound.protection.outlook.com
([2a01:111:f403:2606::701]
helo=EUR02-AM0-obe.outbound.protection.outlook.com)
by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256)
(Exim 4.90_1) (envelope-from <javier_vm@HIDDEN>) id 1rptDl-0008E0-0J
for bug-guix@HIDDEN; Thu, 28 Mar 2024 13:07:22 -0400
ARC-Seal: i=1; a=rsa-sha256; s=arcselector9901; d=microsoft.com; cv=none;
b=W5yqCYMpSyLNO2ywetaNfFtO9rMEgeBxDKVyBB+tlczMeP0PwSDM7DCTCmwuf+F+98EDXuUFn8gesZxrAEpw9ZEjI8mIFSnu1aULNAi7A+EiePDVtSW/m3DSgh81RSRgZxb7jqN41YMjgUxEVKko5Dp+q8Bz1wKD8ZPlzV7Q+JxjMeRoP57bzE//diy5scWGVHgkEgxOMWEEQPnlWBggdEVK1RaU9dQmnNKTTIdXarSY57p+11BdMpJekw7uQFpS0fiHkSDgg4P+ya+9MyjdvmN2whlk8Bjnd1HoV+E75bpq1q/evul+gi8rqsLW6Ju7weJW8rN0dkfVd4QxOGorNQ==
ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=microsoft.com;
s=arcselector9901;
h=From:Date:Subject:Message-ID:Content-Type:MIME-Version:X-MS-Exchange-AntiSpam-MessageData-ChunkCount:X-MS-Exchange-AntiSpam-MessageData-0:X-MS-Exchange-AntiSpam-MessageData-1;
bh=K1S3g0WzwB7ctu9AiimpGX8ZIs2VxZiIUttP1VAfQWk=;
b=NBSnoer0fYtFVjrct2ico7n4ZgyO07bGwZpDUKGakZWyvM7HgwF5ymnkrTJVDqfME/dSRuIEMiEcxslP+33hjm6gfieLb4R2b2b0wKcUrAwPQSDPPowYJH/R4FvD/nqC5L4HNV55r3A4PmQdWxK5Ncb/+Y5p1jviMNJz1djVHM0iQQUFHuf+Tek1Amk+vo2L8uFfYBih2hP/outkLdviOLnpRLt46LsTSzgp9+UMPzC5sh1M9dLe0RHHSKZ3oey7QHhCBKZsq/KEEMIo4VA/xBX2mjmafbB/2RQ86fjsuDJ8FX+CttHNR+2p8ExdUWpslCMrAEVYlqTsUkjXzelnkg==
ARC-Authentication-Results: i=1; mx.microsoft.com 1; spf=pass
smtp.mailfrom=unex.es; dmarc=pass action=none header.from=unex.es; dkim=pass
header.d=unex.es; arc=none
DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed;
d=unexes.onmicrosoft.com; s=selector2-unexes-onmicrosoft-com;
h=From:Date:Subject:Message-ID:Content-Type:MIME-Version:X-MS-Exchange-SenderADCheck;
bh=K1S3g0WzwB7ctu9AiimpGX8ZIs2VxZiIUttP1VAfQWk=;
b=Tknjk3YyMN/i/hdACkTz6LUnXq8eZKkixCFFeC3nkxzSFb+aSmRTiwRDw6w10R7XNXzbwI9k4oET8isvhzkhUN58ch18mSwF06ECzMb3eYsd329tvFshgCSW6XkDr/gAWWSx+17+y06R+0Ep9rsu5xwtuYw8fB7JzGwK0pse02k=
Authentication-Results: dkim=none (message not signed)
header.d=none;dmarc=none action=none header.from=unex.es;
Received: from AS1PR05MB9492.eurprd05.prod.outlook.com (2603:10a6:20b:4d0::19)
by AM8PR05MB8065.eurprd05.prod.outlook.com (2603:10a6:20b:367::23)
with Microsoft SMTP Server (version=TLS1_2,
cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.20.7409.33; Thu, 28 Mar
2024 17:02:15 +0000
Received: from AS1PR05MB9492.eurprd05.prod.outlook.com
([fe80::6b4a:2ce9:25e0:cdad]) by AS1PR05MB9492.eurprd05.prod.outlook.com
([fe80::6b4a:2ce9:25e0:cdad%7]) with mapi id 15.20.7409.031; Thu, 28 Mar 2024
17:02:15 +0000
Content-Type: multipart/alternative;
boundary="------------x2KYxPXsLxTQW2syl6DowcUC"
Message-ID: <b3adea4f-849a-41a6-af63-4eca27863778@HIDDEN>
Date: Thu, 28 Mar 2024 18:02:13 +0100
User-Agent: Mozilla Thunderbird
Content-Language: en-US, es-ES
From: Javier Vaquero =?UTF-8?Q?Mart=C3=ADnez?= <javier_vm@HIDDEN>
X-ClientProxiedBy: MR1P264CA0060.FRAP264.PROD.OUTLOOK.COM
(2603:10a6:501:3e::21) To AS1PR05MB9492.eurprd05.prod.outlook.com
(2603:10a6:20b:4d0::19)
MIME-Version: 1.0
X-MS-PublicTrafficType: Email
X-MS-TrafficTypeDiagnostic: AS1PR05MB9492:EE_|AM8PR05MB8065:EE_
X-MS-Office365-Filtering-Correlation-Id: d7e235a2-dabd-4747-4309-08dc4f48d1a3
X-MS-Exchange-AtpMessageProperties: SA
X-MS-Exchange-SenderADCheck: 1
X-MS-Exchange-AntiSpam-Relay: 0
X-Microsoft-Antispam: BCL:0;
X-Microsoft-Antispam-Message-Info: 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
X-Forefront-Antispam-Report: CIP:255.255.255.255; CTRY:; LANG:en; SCL:1; SRV:;
IPV:NLI; SFV:NSPM; H:AS1PR05MB9492.eurprd05.prod.outlook.com; PTR:; CAT:NONE;
SFS:(13230031)(366007)(376005)(1800799015); DIR:OUT; SFP:1102;
X-MS-Exchange-AntiSpam-MessageData-ChunkCount: 1
X-MS-Exchange-AntiSpam-MessageData-0: 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
X-OriginatorOrg: unex.es
X-MS-Exchange-CrossTenant-Network-Message-Id: d7e235a2-dabd-4747-4309-08dc4f48d1a3
X-MS-Exchange-CrossTenant-AuthSource: AS1PR05MB9492.eurprd05.prod.outlook.com
X-MS-Exchange-CrossTenant-AuthAs: Internal
X-MS-Exchange-CrossTenant-OriginalArrivalTime: 28 Mar 2024 17:02:15.4734 (UTC)
X-MS-Exchange-CrossTenant-FromEntityHeader: Hosted
X-MS-Exchange-CrossTenant-Id: 0b39c48b-9232-48a8-abc4-d19872a9c77b
X-MS-Exchange-CrossTenant-MailboxType: HOSTED
X-MS-Exchange-CrossTenant-UserPrincipalName: HPFm0Sr5LRFjdfx9jeuQrteG/z2cyUILk6gZoeCmggY3g6Z1d31cHDkCHSe3DtmcaA8S1ElvBGb05d+OhrECdw==
X-MS-Exchange-Transport-CrossTenantHeadersStamped: AM8PR05MB8065
Received-SPF: pass client-ip=2a01:111:f403:2606::701;
envelope-from=javier_vm@HIDDEN;
helo=EUR02-AM0-obe.outbound.protection.outlook.com
X-Spam_score_int: -18
X-Spam_score: -1.9
X-Spam_bar: -
X-Spam_report: (-1.9 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1,
DKIM_VALID=-0.1, HTML_MESSAGE=0.001, SPF_HELO_PASS=-0.001,
SPF_PASS=-0.001 autolearn=ham autolearn_force=no
X-Spam_action: no action
X-Spam-Score: 0.9 (/)
X-Mailman-Approved-At: Fri, 29 Mar 2024 00:07:56 -0400
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>,
<mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>,
<mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: -0.1 (/)
--------------x2KYxPXsLxTQW2syl6DowcUC
Content-Type: text/plain; charset=UTF-8; format=flowed
Content-Transfer-Encoding: 8bit
Dear guix community,
I am quite new to Guix so I apologize if I am doing something wrong.
I added channel guix-cran to get R packages. I installed r-sf r-terra,
and other packages. However, I cannot load them in R.
Here, at the end of the message I show and example with r-rgdal but same
thing happens with r-sf or r-terra.
Am I doing something wrong? Can you reproduce the bug?
Regards,
Javier.
|$ guix shell r r-rgdal -- R -e "library(rgdal)" R version 4.3.3
(2024-02-29) -- "Angel Food Cake" Copyright (C) 2024 The R Foundation
for Statistical Computing Platform: x86_64-unknown-linux-gnu (64-bit) R
es un software libre y viene sin GARANTIA ALGUNA. Usted puede
redistribuirlo bajo ciertas circunstancias. Escriba 'license()' o
'licence()' para detalles de distribucion. R es un proyecto colaborativo
con muchos contribuyentes. Escriba 'contributors()' para obtener más
información y 'citation()' para saber cómo citar R o paquetes de R en
publicaciones. Escriba 'demo()' para demostraciones, 'help()' para el
sistema on-line de ayuda, o 'help.start()' para abrir el sistema de
ayuda HTML con su navegador. Escriba 'q()' para salir de R. >
library(rgdal) Loading required package: sp Error: package or namespace
load failed for ‘rgdal’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object
'/gnu/store/xjs26gdxwj2149rzxmq1rfikbly2i1yr-r-rgdal-1.6-7/site-library/rgdal/libs/rgdal.so':
/gnu/store/71kgqypidg2ksvwm84ccqjwyzai9ay1i-gdal-3.6.1/lib/libgdal.so.32:
undefined symbol: GEOSConcaveHull_r |
--------------x2KYxPXsLxTQW2syl6DowcUC
Content-Type: text/html; charset=UTF-8
Content-Transfer-Encoding: 8bit
<!DOCTYPE html><html><head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
</head>
<body>
<div class="markdown-here-wrapper" data-md-url="" style="">
<p style="margin: 0px 0px 1.2em !important;">Dear guix community,</p>
<p style="margin: 0px 0px 1.2em !important;">I am quite new to
Guix so I apologize if I am doing something wrong.</p>
<p style="margin: 0px 0px 1.2em !important;">I added channel
guix-cran to get R packages. I installed r-sf r-terra, and other
packages. However, I cannot load them in R.</p>
<p style="margin: 0px 0px 1.2em !important;">Here, at the end of
the message I show and example with r-rgdal but same thing
happens with r-sf or r-terra.</p>
<p style="margin: 0px 0px 1.2em !important;">Am I doing something
wrong? Can you reproduce the bug?</p>
<p style="margin: 0px 0px 1.2em !important;">Regards,</p>
<p style="margin: 0px 0px 1.2em !important;">Javier.</p>
<pre style="font-family: Consolas, Inconsolata, Courier, monospace;font-size: 1em; line-height: 1.2em;margin: 1.2em 0px;"><code style="font-family: Consolas, Inconsolata, Courier, monospace;margin: 0px 0.15em; padding: 0px 0.3em; white-space: pre-wrap; font-weight: 550; background-color: rgba(119, 119, 119, 0.3); border-radius: 3px; display: inline;white-space: pre; overflow: auto; border-radius: 3px; border: 1px solid rgb(204, 204, 204); padding: 0.5em 0.7em; display: block;">
$ guix shell r r-rgdal -- R -e "library(rgdal)"
R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-unknown-linux-gnu (64-bit)
R es un software libre y viene sin GARANTIA ALGUNA.
Usted puede redistribuirlo bajo ciertas circunstancias.
Escriba 'license()' o 'licence()' para detalles de distribucion.
R es un proyecto colaborativo con muchos contribuyentes.
Escriba 'contributors()' para obtener más información y
'citation()' para saber cómo citar R o paquetes de R en publicaciones.
Escriba 'demo()' para demostraciones, 'help()' para el sistema on-line de ayuda,
o 'help.start()' para abrir el sistema de ayuda HTML con su navegador.
Escriba 'q()' para salir de R.
> library(rgdal)
Loading required package: sp
Error: package or namespace load failed for ‘rgdal’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/gnu/store/xjs26gdxwj2149rzxmq1rfikbly2i1yr-r-rgdal-1.6-7/site-library/rgdal/libs/rgdal.so':
/gnu/store/71kgqypidg2ksvwm84ccqjwyzai9ay1i-gdal-3.6.1/lib/libgdal.so.32: undefined symbol: GEOSConcaveHull_r
</code></pre>
<div title="MDH:PHA+RGVhciBndWl4IGNvbW11bml0eSw8L3A+PHA+SSBhbSBxdWl0ZSBuZXcgdG8gR3VpeCBzbyBJ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" aria-hidden="true" style="height:0;width:0;max-height:0;max-width:0;overflow:hidden;font-size:0;padding:0;margin:0;"></div>
</div>
</body>
</html>
--------------x2KYxPXsLxTQW2syl6DowcUC--
Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) Content-Type: text/plain; charset=utf-8 X-Loop: help-debbugs@HIDDEN From: help-debbugs@HIDDEN (GNU bug Tracking System) To: Javier Vaquero =?UTF-8?Q?Mart=C3=ADnez?= <javier_vm@HIDDEN> Subject: bug#70064: Acknowledgement (Error when loading r-sf and other spatial packages (gdal related)) Message-ID: <handler.70064.B.17116852781019.ack <at> debbugs.gnu.org> References: <b3adea4f-849a-41a6-af63-4eca27863778@HIDDEN> X-Gnu-PR-Message: ack 70064 X-Gnu-PR-Package: guix Reply-To: 70064 <at> debbugs.gnu.org Date: Fri, 29 Mar 2024 04:08:04 +0000 Thank you for filing a new bug report with debbugs.gnu.org. This is an automatically generated reply to let you know your message has been received. Your message is being forwarded to the package maintainers and other interested parties for their attention; they will reply in due course. Your message has been sent to the package maintainer(s): bug-guix@HIDDEN If you wish to submit further information on this problem, please send it to 70064 <at> debbugs.gnu.org. Please do not send mail to help-debbugs@HIDDEN unless you wish to report a problem with the Bug-tracking system. --=20 70064: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D70064 GNU Bug Tracking System Contact help-debbugs@HIDDEN with problems
X-Loop: help-debbugs@HIDDEN
Subject: bug#70064: Error when loading r-sf and other spatial packages (gdal related)
References: <b3adea4f-849a-41a6-af63-4eca27863778@HIDDEN>
In-Reply-To: <b3adea4f-849a-41a6-af63-4eca27863778@HIDDEN>
Resent-From: Javier Vaquero =?UTF-8?Q?Mart=C3=ADnez?= <javier_vm@HIDDEN>
Original-Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
Resent-CC: bug-guix@HIDDEN
Resent-Date: Thu, 04 Apr 2024 16:10:03 +0000
Resent-Message-ID: <handler.70064.B70064.17122469448149 <at> debbugs.gnu.org>
Resent-Sender: help-debbugs@HIDDEN
X-GNU-PR-Message: followup 70064
X-GNU-PR-Package: guix
X-GNU-PR-Keywords:
To: 70064 <at> debbugs.gnu.org
Received: via spool by 70064-submit <at> debbugs.gnu.org id=B70064.17122469448149
(code B ref 70064); Thu, 04 Apr 2024 16:10:03 +0000
Received: (at 70064) by debbugs.gnu.org; 4 Apr 2024 16:09:04 +0000
Received: from localhost ([127.0.0.1]:34566 helo=debbugs.gnu.org)
by debbugs.gnu.org with esmtp (Exim 4.84_2)
(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
id 1rsPeA-00026v-JG
for submit <at> debbugs.gnu.org; Thu, 04 Apr 2024 12:09:03 -0400
Received: from mail-db8eur05on2126.outbound.protection.outlook.com
([40.107.20.126]:6272 helo=EUR05-DB8-obe.outbound.protection.outlook.com)
by debbugs.gnu.org with esmtp (Exim 4.84_2)
(envelope-from <javier_vm@HIDDEN>) id 1rsPZg-0001f8-2j
for 70064 <at> debbugs.gnu.org; Thu, 04 Apr 2024 12:04:25 -0400
ARC-Seal: i=1; a=rsa-sha256; s=arcselector9901; d=microsoft.com; cv=none;
b=FpaR1dItGRw3JqHMUQGitCoNcAc95Nn1/70Ys+WDL4xxBRYOUy70+mwNmw57IORJ0IyX1GkrGs2jSWc8Y5052TCc35xKJr6+gS5TkM1CxpoC+mXtVAP/nYynLnVX4kZSjJaUVQiZmRGHGlPv8aqGGBJ1MvBqHFWZ3ulhLxWZ791XpKISIRkTUSL+0SW6VwCVO8FkN+9oxvLgD/Wwl7ree7/bcCo7pSQ+dh0xlsI/6wFDtxRyCdap05lGzx6LyeNXwhkofkSCaENSDzM01eb1dQX8TiI322HcXw8Bh1rP7hjhCRLDB7RwZ1jTgcAL3Rh0QyCS17Nbzd+sQ2+HjSR0HA==
ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=microsoft.com;
s=arcselector9901;
h=From:Date:Subject:Message-ID:Content-Type:MIME-Version:X-MS-Exchange-AntiSpam-MessageData-ChunkCount:X-MS-Exchange-AntiSpam-MessageData-0:X-MS-Exchange-AntiSpam-MessageData-1;
bh=+PEoEXP5iVW3A3iYtqKQ4g/kqgNZqcl6pJ++WkQWbEU=;
b=Jp8wvJ+U/0EAn7udbaoiUt7V6oiZM9zcX/0TjMaClWf43JFa/4fByKnJ5M7qCDlMscp3BWeocEpF4xONeeoIiaoS08CDbNKzpP++T7b6BlPr7zS7TmnuO0J3zFLqDezBEAX9DTIu3uLSnrlJgMkYh3h/mvWFpzL3GnweV8rC6sLfIdVeu1ARkFTTajb3RPOiqPHqHb7jTGfx3eFwOSYEHcOK5eB/FO90JSbymvrJJmToxoSiv5/r1EfLLKn/xBXGMQ0/CNIX9KfLae7jLKrd243acNafWoiYJnXYPm8X2v2S7pRK0dLelnbShIc0jUEHlzlK7GfeusadY0xZFc/cLQ==
ARC-Authentication-Results: i=1; mx.microsoft.com 1; spf=pass
smtp.mailfrom=unex.es; dmarc=pass action=none header.from=unex.es; dkim=pass
header.d=unex.es; arc=none
DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed;
d=unexes.onmicrosoft.com; s=selector2-unexes-onmicrosoft-com;
h=From:Date:Subject:Message-ID:Content-Type:MIME-Version:X-MS-Exchange-SenderADCheck;
bh=+PEoEXP5iVW3A3iYtqKQ4g/kqgNZqcl6pJ++WkQWbEU=;
b=1BjgeWT4rw0O6m1Nd8A/VqkTEhpqZa4JthpRsBwdxxlxTb/yNVxpR6fZoBJgzavmE+Id0FFHC8ScZvcusJZkKzL7CryiH+nahC/9HX1Tl5nfCBu/NO2XYXbgKyBtcH0cT37L503wOJEopjgArdp8w+5yFuGL5efTsWl6x0+yVjw=
Received: from AS1PR05MB9492.eurprd05.prod.outlook.com (2603:10a6:20b:4d0::19)
by PAVPR05MB10280.eurprd05.prod.outlook.com (2603:10a6:102:2fb::9)
with Microsoft SMTP Server (version=TLS1_2,
cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.20.7409.46; Thu, 4 Apr
2024 16:04:12 +0000
Received: from AS1PR05MB9492.eurprd05.prod.outlook.com
([fe80::6b4a:2ce9:25e0:cdad]) by AS1PR05MB9492.eurprd05.prod.outlook.com
([fe80::6b4a:2ce9:25e0:cdad%7]) with mapi id 15.20.7409.042; Thu, 4 Apr 2024
16:04:12 +0000
Message-ID: <147de374-ea73-4996-88c3-b33d341edf80@HIDDEN>
Date: Thu, 4 Apr 2024 18:04:10 +0200
User-Agent: Mozilla Thunderbird
From: Javier Vaquero =?UTF-8?Q?Mart=C3=ADnez?= <javier_vm@HIDDEN>
Content-Language: en-US, es-ES
Content-Type: text/plain; charset=UTF-8; format=flowed
Content-Transfer-Encoding: 7bit
X-ClientProxiedBy: MA3P292CA0013.ESPP292.PROD.OUTLOOK.COM
(2603:10a6:250:2c::6) To AS1PR05MB9492.eurprd05.prod.outlook.com
(2603:10a6:20b:4d0::19)
MIME-Version: 1.0
X-MS-PublicTrafficType: Email
X-MS-TrafficTypeDiagnostic: AS1PR05MB9492:EE_|PAVPR05MB10280:EE_
X-MS-Exchange-AtpMessageProperties: SA
X-MS-Exchange-SenderADCheck: 1
X-MS-Exchange-AntiSpam-Relay: 0
X-Microsoft-Antispam: BCL:0;
X-Microsoft-Antispam-Message-Info: 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
X-Forefront-Antispam-Report: CIP:255.255.255.255; CTRY:; LANG:en; SCL:1; SRV:;
IPV:NLI; SFV:NSPM; H:AS1PR05MB9492.eurprd05.prod.outlook.com; PTR:; CAT:NONE;
SFS:(13230031)(376005)(1800799015)(366007); DIR:OUT; SFP:1102;
X-MS-Exchange-AntiSpam-MessageData-ChunkCount: 1
X-MS-Exchange-AntiSpam-MessageData-0: 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
X-OriginatorOrg: unex.es
X-MS-Exchange-CrossTenant-Network-Message-Id: 4de0e635-7fdc-4a56-a1eb-08dc54c0de4e
X-MS-Exchange-CrossTenant-AuthSource: AS1PR05MB9492.eurprd05.prod.outlook.com
X-MS-Exchange-CrossTenant-AuthAs: Internal
X-MS-Exchange-CrossTenant-OriginalArrivalTime: 04 Apr 2024 16:04:12.1349 (UTC)
X-MS-Exchange-CrossTenant-FromEntityHeader: Hosted
X-MS-Exchange-CrossTenant-Id: 0b39c48b-9232-48a8-abc4-d19872a9c77b
X-MS-Exchange-CrossTenant-MailboxType: HOSTED
X-MS-Exchange-CrossTenant-UserPrincipalName: dRwMnG4W8JpNMBMqryZ9yjVB8wbNg918ARYyOnFMmcKwufGJyPwiir41CZ3TlqBbtJujL+CSIy2IV73ROeo13g==
X-MS-Exchange-Transport-CrossTenantHeadersStamped: PAVPR05MB10280
X-Spam-Score: -0.0 (/)
X-Mailman-Approved-At: Thu, 04 Apr 2024 12:08:59 -0400
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>,
<mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>,
<mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: -1.0 (-)
So I managed to solve this. It turns out that some environment variables
where making this error to happen. Running in an isolated environment
with `guix shell -C r r-sf -- r` solves the problem.
Regards
GNU bug tracking system
Copyright (C) 1999 Darren O. Benham,
1997 nCipher Corporation Ltd,
1994-97 Ian Jackson.