GNU bug report logs - #70336
[PATCH] gnu: Add python-libensemble.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: guix-patches <at> gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH] gnu: Add python-libensemble.
Date: Thu, 11 Apr 2024 09:42:08 +0000

* gnu/packages/maths.scm (python-libensemble): New variable.

Change-Id: I45d4ba209af746f22f3f6c74a01063726478de0f
---
 gnu/packages/maths.scm | 53 ++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 53 insertions(+)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 03760f3f3e..6f7e67329e 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -839,6 +839,59 @@ (define-public glpk-4
        (base32
         "040sfaa9jclg2nqdh83w71sv9rc1sznpnfiripjdyr48cady50a2"))))))
 
+(define-public python-libensemble
+  (package
+    (name "python-libensemble")
+    (version "1.2.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "libensemble" version))
+       (sha256
+        (base32 "0y46b8rk3dnnjnap76l80cj3ddkjcic1vcl706cajac19vnk8vlk"))))
+    (build-system pyproject-build-system)
+    (native-inputs (list ncurses
+                         python-mock
+                         python-mpi4py
+                         python-pytest
+                         python-pytest-cov
+                         python-pytest-timeout))
+    (propagated-inputs (list python-numpy
+                             python-psutil
+                             python-pydantic-2
+                             python-pyyaml
+                             python-tomli))
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'relax-psutil
+            (lambda _
+              (substitute* "setup.py"
+                (("psutil>=5.9.4") "psutil>=5.9.2"))))
+          (replace 'check
+            (lambda* (#:key tests? #:allow-other-keys)
+              (when tests?
+                ;; These files require MPI and call subprocesses.
+                (delete-file
+                 "libensemble/tests/unit_tests/test_executor.py")
+                (delete-file
+                 "libensemble/tests/unit_tests/test_executor_gpus.py")
+                ;; Run only unit tests, regression tests require MPI.
+                (setenv "TERM" "xterm")
+                ;; A very bad way to skip another MPI test.
+                (substitute* "libensemble/tests/run-tests.sh"
+                  (("export UNIT_TEST_MPI_SUBDIR=.*")
+                   "export UNIT_TEST_MPI_SUBDIR=''"))
+                ;; Run the test script.
+                (invoke "bash" "libensemble/tests/run-tests.sh" "-u")))))))
+    (home-page "https://github.com/Libensemble/libensemble")
+    (synopsis "Toolkit for dynamic ensembles of calculations")
+    (description "@code{libensemble} is a a complete toolkit for dynamic
+ensembles of calculations.  It connects @code{deciders} to experiments or
+simulations.")
+    (license license:bsd-3)))
+
 (define-public linasm
   (package
     (name "linasm")

base-commit: 51de844a0ff6ea224367a384092896bce6848b9f
-- 
2.39.2

Message #8 received at 70336 <at> debbugs.gnu.org (full text, mbox):

From: Nicolas Graves <ngraves <at> ngraves.fr>
To: Vinicius Monego <monego <at> posteo.net>, 70336 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: Re: [bug#70336] [PATCH] gnu: Add python-libensemble.
Date: Tue, 16 Apr 2024 00:35:51 +0200

On 2024-04-11 09:42, Vinicius Monego wrote:

> * gnu/packages/maths.scm (python-libensemble): New variable.
>
> Change-Id: I45d4ba209af746f22f3f6c74a01063726478de0f
> ---
>  gnu/packages/maths.scm | 53 ++++++++++++++++++++++++++++++++++++++++++
>  1 file changed, 53 insertions(+)
>
> diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
> index 03760f3f3e..6f7e67329e 100644
> --- a/gnu/packages/maths.scm
> +++ b/gnu/packages/maths.scm
> @@ -839,6 +839,59 @@ (define-public glpk-4
>         (base32
>          "040sfaa9jclg2nqdh83w71sv9rc1sznpnfiripjdyr48cady50a2"))))))
>  
> +(define-public python-libensemble
> +  (package
> +    (name "python-libensemble")
> +    (version "1.2.2")
> +    (source
> +     (origin
> +       (method url-fetch)
> +       (uri (pypi-uri "libensemble" version))
> +       (sha256
> +        (base32 "0y46b8rk3dnnjnap76l80cj3ddkjcic1vcl706cajac19vnk8vlk"))))
> +    (build-system pyproject-build-system)
> +    (native-inputs (list ncurses
> +                         python-mock
> +                         python-mpi4py
> +                         python-pytest
> +                         python-pytest-cov
> +                         python-pytest-timeout))
> +    (propagated-inputs (list python-numpy
> +                             python-psutil
> +                             python-pydantic-2
> +                             python-pyyaml
> +                             python-tomli))
> +    (arguments
> +     (list
> +      #:phases
> +      #~(modify-phases %standard-phases
> +          (add-after 'unpack 'relax-psutil
> +            (lambda _
> +              (substitute* "setup.py"
> +                (("psutil>=5.9.4") "psutil>=5.9.2"))))
> +          (replace 'check
> +            (lambda* (#:key tests? #:allow-other-keys)
> +              (when tests?
> +                ;; These files require MPI and call subprocesses.
> +                (delete-file
> +                 "libensemble/tests/unit_tests/test_executor.py")
> +                (delete-file
> +                 "libensemble/tests/unit_tests/test_executor_gpus.py")
> +                ;; Run only unit tests, regression tests require MPI.
> +                (setenv "TERM" "xterm")
> +                ;; A very bad way to skip another MPI test.
> +                (substitute* "libensemble/tests/run-tests.sh"
> +                  (("export UNIT_TEST_MPI_SUBDIR=.*")
> +                   "export UNIT_TEST_MPI_SUBDIR=''"))
> +                ;; Run the test script.
> +                (invoke "bash" "libensemble/tests/run-tests.sh" "-u")))))))
> +    (home-page "https://github.com/Libensemble/libensemble")
> +    (synopsis "Toolkit for dynamic ensembles of calculations")
> +    (description "@code{libensemble} is a a complete toolkit for dynamic

Just a little typo here (double a), otherwise LGTM.
guix lint only complains on archival, but it's fine.
built and rebuilt.

> +ensembles of calculations.  It connects @code{deciders} to experiments or
> +simulations.")
> +    (license license:bsd-3)))
> +
>  (define-public linasm
>    (package
>      (name "linasm")
>
> base-commit: 51de844a0ff6ea224367a384092896bce6848b9f

-- 
Best regards,
Nicolas Graves

Message #13 received at 70336-done <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: Nicolas Graves <ngraves <at> ngraves.fr>, 70336-done <at> debbugs.gnu.org
Subject: Re: [bug#70336] [PATCH] gnu: Add python-libensemble.
Date: Sat, 11 May 2024 17:29:43 +0000

Em 15/04/2024 19:35, Nicolas Graves escreveu:
> On 2024-04-11 09:42, Vinicius Monego wrote:
>
>> * gnu/packages/maths.scm (python-libensemble): New variable.
>>
>> Change-Id: I45d4ba209af746f22f3f6c74a01063726478de0f
>> ---
>>   gnu/packages/maths.scm | 53 ++++++++++++++++++++++++++++++++++++++++++
>>   1 file changed, 53 insertions(+)
>>
>> diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
>> index 03760f3f3e..6f7e67329e 100644
>> --- a/gnu/packages/maths.scm
>> +++ b/gnu/packages/maths.scm
>> @@ -839,6 +839,59 @@ (define-public glpk-4
>>          (base32
>>           "040sfaa9jclg2nqdh83w71sv9rc1sznpnfiripjdyr48cady50a2"))))))
>>   
>> +(define-public python-libensemble
>> +  (package
>> +    (name "python-libensemble")
>> +    (version "1.2.2")
>> +    (source
>> +     (origin
>> +       (method url-fetch)
>> +       (uri (pypi-uri "libensemble" version))
>> +       (sha256
>> +        (base32 "0y46b8rk3dnnjnap76l80cj3ddkjcic1vcl706cajac19vnk8vlk"))))
>> +    (build-system pyproject-build-system)
>> +    (native-inputs (list ncurses
>> +                         python-mock
>> +                         python-mpi4py
>> +                         python-pytest
>> +                         python-pytest-cov
>> +                         python-pytest-timeout))
>> +    (propagated-inputs (list python-numpy
>> +                             python-psutil
>> +                             python-pydantic-2
>> +                             python-pyyaml
>> +                             python-tomli))
>> +    (arguments
>> +     (list
>> +      #:phases
>> +      #~(modify-phases %standard-phases
>> +          (add-after 'unpack 'relax-psutil
>> +            (lambda _
>> +              (substitute* "setup.py"
>> +                (("psutil>=5.9.4") "psutil>=5.9.2"))))
>> +          (replace 'check
>> +            (lambda* (#:key tests? #:allow-other-keys)
>> +              (when tests?
>> +                ;; These files require MPI and call subprocesses.
>> +                (delete-file
>> +                 "libensemble/tests/unit_tests/test_executor.py")
>> +                (delete-file
>> +                 "libensemble/tests/unit_tests/test_executor_gpus.py")
>> +                ;; Run only unit tests, regression tests require MPI.
>> +                (setenv "TERM" "xterm")
>> +                ;; A very bad way to skip another MPI test.
>> +                (substitute* "libensemble/tests/run-tests.sh"
>> +                  (("export UNIT_TEST_MPI_SUBDIR=.*")
>> +                   "export UNIT_TEST_MPI_SUBDIR=''"))
>> +                ;; Run the test script.
>> +                (invoke "bash" "libensemble/tests/run-tests.sh" "-u")))))))
>> +    (home-page "https://github.com/Libensemble/libensemble")
>> +    (synopsis "Toolkit for dynamic ensembles of calculations")
>> +    (description "@code{libensemble} is a a complete toolkit for dynamic
> Just a little typo here (double a), otherwise LGTM.
> guix lint only complains on archival, but it's fine.
> built and rebuilt.

Pushed  with that correction and an update to 1.3.0, thanks.

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