GNU bug report logs - #22738
Build failure in vigra

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Danny Milosavljevic <dannym <at> scratchpost.org>
To: bug-guix <at> gnu.org
Subject: Build failure in vigra
Date: Fri, 19 Feb 2016 02:02:32 +0100

/tmp/guix-build-vigra-1.10.0.drv-0/build
...
======================================================================
ERROR: test_arraytypes.testMethods
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/gnu/store/m71dy36xl5jcp1qgw9dkyab3yv9gpibx-python2-nose-1.3.7/lib/python2.7/site-packages/nose-1.3.7-py2.7.egg/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/tmp/guix-build-vigra-1.10.0.drv-0/build/vigranumpy/test/test_arraytypes.py", line 1331, in testMethods
    nz = n.nonzero()
  File "/tmp/guix-build-vigra-1.10.0.drv-0/build/vigranumpy/vigra/arraytypes.py", line 1285, in nonzero
    res[k].axistags = AxisTags(AxisInfo(self.axistags[k]))
AttributeError: 'numpy.ndarray' object has no attribute 'axistags'

----------------------------------------------------------------------

Message #8 received at 22738 <at> debbugs.gnu.org (full text, mbox):

From: Leo Famulari <leo <at> famulari.name>
To: Danny Milosavljevic <dannym <at> scratchpost.org>
Cc: 22738 <at> debbugs.gnu.org
Subject: Re: bug#22738: Build failure in vigra
Date: Thu, 18 Feb 2016 22:59:11 -0500

On Fri, Feb 19, 2016 at 02:02:32AM +0100, Danny Milosavljevic wrote:
> /tmp/guix-build-vigra-1.10.0.drv-0/build
> ...
> ======================================================================
> ERROR: test_arraytypes.testMethods
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/gnu/store/m71dy36xl5jcp1qgw9dkyab3yv9gpibx-python2-nose-1.3.7/lib/python2.7/site-packages/nose-1.3.7-py2.7.egg/nose/case.py", line 197, in runTest
>     self.test(*self.arg)
>   File "/tmp/guix-build-vigra-1.10.0.drv-0/build/vigranumpy/test/test_arraytypes.py", line 1331, in testMethods
>     nz = n.nonzero()
>   File "/tmp/guix-build-vigra-1.10.0.drv-0/build/vigranumpy/vigra/arraytypes.py", line 1285, in nonzero
>     res[k].axistags = AxisTags(AxisInfo(self.axistags[k]))
> AttributeError: 'numpy.ndarray' object has no attribute 'axistags'

It looks like we need this module 'vigranumpy':
https://ukoethe.github.io/vigra/doc-release/vigranumpy/index.html

Message #11 received at 22738 <at> debbugs.gnu.org (full text, mbox):

From: Andreas Enge <andreas <at> enge.fr>
To: Leo Famulari <leo <at> famulari.name>
Cc: Danny Milosavljevic <dannym <at> scratchpost.org>, 22738 <at> debbugs.gnu.org
Subject: Re: bug#22738: Build failure in vigra
Date: Wed, 24 Feb 2016 11:32:52 +0100

On Thu, Feb 18, 2016 at 10:59:11PM -0500, Leo Famulari wrote:
> It looks like we need this module 'vigranumpy':
> https://ukoethe.github.io/vigra/doc-release/vigranumpy/index.html

This is part of the vigra source code. There should soon be a new vigra
release:
   https://mailhost.informatik.uni-hamburg.de/pipermail/vigra/2016-February/001317.html
but it also failed its tests for me (in another place).

I made a bug report on the vigra mailing list:
   https://mailhost.informatik.uni-hamburg.de/pipermail/vigra/2016-February/001319.html

Andreas

Message #14 received at 22738 <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <ricardo.wurmus <at> mdc-berlin.de>
To: Andreas Enge <andreas <at> enge.fr>
Cc: 22738 <at> debbugs.gnu.org, Leo Famulari <leo <at> famulari.name>
Subject: Re: bug#22738: Build failure in vigra
Date: Wed, 24 Feb 2016 12:30:38 +0100

Andreas Enge <andreas <at> enge.fr> writes:

> On Thu, Feb 18, 2016 at 10:59:11PM -0500, Leo Famulari wrote:
>> It looks like we need this module 'vigranumpy':
>> https://ukoethe.github.io/vigra/doc-release/vigranumpy/index.html
>
> This is part of the vigra source code. There should soon be a new vigra
> release:
>    https://mailhost.informatik.uni-hamburg.de/pipermail/vigra/2016-February/001317.html
> but it also failed its tests for me (in another place).
>
> I made a bug report on the vigra mailing list:
>    https://mailhost.informatik.uni-hamburg.de/pipermail/vigra/2016-February/001319.html

I’m told[1] that this is solved on branch “version-1-11-rc”, but I
haven’t been able to test this yet.  Would anyone else like to try?

~~ Ricardo

[1]: https://github.com/ukoethe/vigra/issues/326#issuecomment-187669279

Message #17 received at 22738 <at> debbugs.gnu.org (full text, mbox):

From: Andreas Enge <andreas <at> enge.fr>
To: Ricardo Wurmus <ricardo.wurmus <at> mdc-berlin.de>
Cc: 22738 <at> debbugs.gnu.org, Leo Famulari <leo <at> famulari.name>
Subject: Re: bug#22738: Build failure in vigra
Date: Wed, 24 Feb 2016 12:55:06 +0100

On Wed, Feb 24, 2016 at 12:30:38PM +0100, Ricardo Wurmus wrote:
> I’m told[1] that this is solved on branch “version-1-11-rc”, but I
> haven’t been able to test this yet.  Would anyone else like to try?
> [1]: https://github.com/ukoethe/vigra/issues/326#issuecomment-187669279

I have, but there is another problem there (see the second half
of my bug report).

Sorry I did not remember that you had opened an issue.

Andreas

Message #20 received at 22738 <at> debbugs.gnu.org (full text, mbox):

From: Efraim Flashner <efraim <at> flashner.co.il>
To: Andreas Enge <andreas <at> enge.fr>
Cc: 22738 <at> debbugs.gnu.org, Leo Famulari <leo <at> famulari.name>
Subject: Re: bug#22738: Build failure in vigra
Date: Wed, 24 Feb 2016 21:50:21 +0200

[Message part 1 (text/plain, inline)]

On Wed, 24 Feb 2016 11:32:52 +0100
Andreas Enge <andreas <at> enge.fr> wrote:

> On Thu, Feb 18, 2016 at 10:59:11PM -0500, Leo Famulari wrote:
>  [...]  
> 
> This is part of the vigra source code. There should soon be a new vigra
> release:
>    https://mailhost.informatik.uni-hamburg.de/pipermail/vigra/2016-February/001317.html
> but it also failed its tests for me (in another place).
> 
> I made a bug report on the vigra mailing list:
>    https://mailhost.informatik.uni-hamburg.de/pipermail/vigra/2016-February/001319.html
> 
> Andreas

As a side note, once this builds libreoffice should build again. Currently
our version of libreoffice is vulnerable to cve-2016-{0794,0795} and should
be upgraded to 5.1.1. I didn't want to push the upgrade until I was sure it
would build correctly, but based on hydra's listed build times I'd be looking
at ~20 hours, so I'm not a good one to push that update when it comes.
https://download.documentfoundation.org/libreoffice/src/5.1.1/

-- 
Efraim Flashner   <efraim <at> flashner.co.il>   אפרים פלשנר
GPG key = A28B F40C 3E55 1372 662D  14F7 41AA E7DC CA3D 8351
Confidentiality cannot be guaranteed on emails sent or received unencrypted

[Message part 2 (application/pgp-signature, inline)]

Message #23 received at 22738 <at> debbugs.gnu.org (full text, mbox):

From: Christopher Allan Webber <cwebber <at> dustycloud.org>
To: Andreas Enge <andreas <at> enge.fr>
Cc: 22738 <at> debbugs.gnu.org, Leo Famulari <leo <at> famulari.name>
Subject: Re: bug#22738: Build failure in vigra
Date: Wed, 02 Mar 2016 12:22:01 -0800

Andreas Enge writes:

> On Thu, Feb 18, 2016 at 10:59:11PM -0500, Leo Famulari wrote:
>> It looks like we need this module 'vigranumpy':
>> https://ukoethe.github.io/vigra/doc-release/vigranumpy/index.html
>
> This is part of the vigra source code. There should soon be a new vigra
> release:
>    https://mailhost.informatik.uni-hamburg.de/pipermail/vigra/2016-February/001317.html
> but it also failed its tests for me (in another place).
>
> I made a bug report on the vigra mailing list:
>    https://mailhost.informatik.uni-hamburg.de/pipermail/vigra/2016-February/001319.html
>
> Andreas

It looks like this is fixed:
  https://mailhost.informatik.uni-hamburg.de/pipermail/vigra/2016-February/001325.html

Is it possible to get an updated version of this package in, then?

Message #26 received at 22738 <at> debbugs.gnu.org (full text, mbox):

From: ludo <at> gnu.org (Ludovic Courtès)
To: Andreas Enge <andreas <at> enge.fr>
Cc: 22738 <at> debbugs.gnu.org, Ricardo Wurmus <ricardo.wurmus <at> mdc-berlin.de>,
 Leo Famulari <leo <at> famulari.name>
Subject: Re: bug#22738: Build failure in vigra
Date: Fri, 25 Mar 2016 09:44:27 +0100

Hi,

Did the update in 019b38758c3895d80a27610d6488ae59455465d6 (March 17)
fix it?

(There are currently no substitutes for this on x86_64.)

Ludo’.

Message #31 received at 22738 <at> debbugs.gnu.org (full text, mbox):

From: Leo Famulari <leo <at> famulari.name>
To: Ludovic Courtès <ludo <at> gnu.org>
Cc: 22738 <at> debbugs.gnu.org, Andreas Enge <andreas <at> enge.fr>,
 Ricardo Wurmus <ricardo.wurmus <at> mdc-berlin.de>
Subject: Re: bug#22738: Build failure in vigra
Date: Sun, 27 Mar 2016 18:34:40 -0400

On Fri, Mar 25, 2016 at 09:44:27AM +0100, Ludovic Courtès wrote:
> Hi,
> 
> Did the update in 019b38758c3895d80a27610d6488ae59455465d6 (March 17)
> fix it?
> 
> (There are currently no substitutes for this on x86_64.)

From the 'fix-letsencrypt' branch on Savannah (which includes that
commit), it works for me on x86_64, but when cross-building to i686, the
test suite fails with:

---
Entering test suite GraphAlgorithmTestSuite

Failure in GraphAlgorithmTest::testEdgeWeightComputation()
Assertion failed: Sequences differ at index 5 [4.24264 != 4.24264]
(/tmp/guix-build-vigra-1.11.0.drv-0/vigra-1.11.0/test/graph_algorithm/test.cxx:543)

1 of 6 tests failed in test suite GraphAlgorithmTestSuite
---

So, 4.24264 != 4.24264?

Message #34 received at 22738-close <at> debbugs.gnu.org (full text, mbox):

From: ludo <at> gnu.org (Ludovic Courtès)
To: Christopher Allan Webber <cwebber <at> dustycloud.org>
Cc: 22738-close <at> debbugs.gnu.org, Andreas Enge <andreas <at> enge.fr>,
 22653-close <at> debbugs.gnu.org, Leo Famulari <leo <at> famulari.name>
Subject: Re: bug#22738: Build failure in vigra
Date: Thu, 02 Jun 2016 21:38:57 +0200

Vigra builds fine now, presumably since commit
019b38758c3895d80a27610d6488ae59455465d6 by Andreas, so closing this
bug.

Ludo’.

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