GNU bug report logs - #66918
[PATCH] gnu: Add r-rnbeads.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-rnbeads.
Date: Fri, 3 Nov 2023 16:11:05 +0100

* gnu/packages/bioconductor.scm (r-rnbeads): New variable.

Change-Id: I78b248a449473fc37ac414295faa6e61269b8625
---
 gnu/packages/bioconductor.scm | 36 +++++++++++++++++++++++++++++++++++
 1 file changed, 36 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d79236ea26..bb51d389cb 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7976,6 +7976,42 @@ (define-public r-rhtslib
 of other R packages who wish to make use of HTSlib.")
     (license license:lgpl2.0+)))
 
+(define-public r-rnbeads
+  (package
+    (name "r-rnbeads")
+    (version "2.20.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "RnBeads" version))
+       (sha256
+        (base32 "15z7l4nmpy01xm19717l27nwf3rfsn6wjv211fn2y4ls40mz75qp"))))
+    (properties `((upstream-name . "RnBeads")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biocgenerics
+           r-cluster
+           r-ff
+           r-fields
+           r-genomicranges
+           r-ggplot2
+           r-gplots
+           r-gridextra
+           r-illuminaio
+           r-iranges
+           r-limma
+           r-mass
+           r-matrixstats
+           r-methylumi
+           r-plyr
+           r-s4vectors))
+    (home-page "https://bioconductor.org/packages/RnBeads")
+    (synopsis "RnBeads")
+    (description
+     "@code{RnBeads} facilitates comprehensive analysis of various types of DNA
+methylation data at the genome scale.")
+    (license license:gpl3)))
+
 (define-public r-impute
   (package
     (name "r-impute")

base-commit: a0a377fdd6c873aeb6340afeddcd23b4ead7657d
-- 
2.41.0

Message #10 received at 66918-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 66918-done <at> debbugs.gnu.org
Subject: Re: [bug#66918] [PATCH] gnu: Add r-rnbeads.
Date: Sat, 04 Nov 2023 17:10:49 +0100

Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:

> * gnu/packages/bioconductor.scm (r-rnbeads): New variable.

Applied, thanks!

-- 
Ricardo

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