GNU bug report logs - #17094
Libtool bug with PGI Fortran compiler on OS X

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Package: libtool; Reported by: "Jeff Squyres (jsquyres)" <jsquyres@HIDDEN>; dated Tue, 25 Mar 2014 14:45:02 UTC; Maintainer for libtool is bug-libtool@HIDDEN.

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From: "Jeff Squyres (jsquyres)" <jsquyres@HIDDEN>
To: "Jeff Squyres (jsquyres)" <jsquyres@HIDDEN>
Subject: Re: bug#17094: Libtool bug with PGI Fortran compiler on OS X
Thread-Topic: bug#17094: Libtool bug with PGI Fortran compiler on OS X
Thread-Index: AQHPSDik36fEwPZdIEKQ/1oLlkFKuZsMn0OA
Date: Fri, 11 Apr 2014 10:08:12 +0000
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Cc: Matt Thompson <fortran@HIDDEN>,
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Has there been any progress on this issue?

Thanks.

On Mar 25, 2014, at 10:43 AM, Jeff Squyres (jsquyres) <jsquyres@HIDDEN> =
wrote:

> Matt Thompson (CC'ed), an Open MPI user, posted to the Open MPI list rece=
ntly stating that he was having trouble installing Open MPI with the PGI co=
mpiler on OS X (thread starting here: http://www.open-mpi.org/community/lis=
ts/users/2014/03/23888.php).
>=20
> After some back and forth, we think we may have found a bug in Libtool.
>=20
> I created a trivial autoconf/automake/libtool package for testing:
>=20
>    https://github.com/jsquyres/pgi-autotool-bug
>=20
> The project makes a trivial Fortran library comprised of two .f90 source =
files.  Here's contents of src/Makefile.am:
>=20
> -----
> lib_LTLIBRARIES =3D libfortran_stuff.la
> libfortran_stuff_la_SOURCES =3D fortran_foo.f90 fortran_bar.f90
> -----
>=20
> I made two tarballs for Matt and had him try them both.  One tarball was =
made with the GNU Autotools tuple that we use to make Open MPI 1.7.x tarbal=
ls (AC 2.69, AM 1.12.2, LT 2.4.2, m4 1.4.16).  The other tarball was with t=
he most recent Automake (1.14.1), just in case this was an AM issue.  Both =
tarballs exhibit the same behavior on his OS X machine with the PGI Fortran=
 compiler.
>=20
> The output from a build seems to indicate a problem with Libtool.  Let me=
 show the problem by contrasting output from "make V=3D1" on my Linux/gfort=
ran based system vs. Matt's OS X / PGI Fortran compiler system.
>=20
> Here's (annotated) output from Linux/gfortran "make V=3D1":
>=20
> -----
> Making all in src
> make[1]: Entering directory `/home/jsquyres/git/pgi-autotool-bug/src'
>=20
> # Compile the fortran_foo.f90 file
> /bin/sh ../libtool  --tag=3DFC   --mode=3Dcompile gfortran  -g -O2 -c -o =
fortran_foo.lo fortran_foo.f90
> libtool: compile:  gfortran -g -O2 -c fortran_foo.f90  -fPIC -o .libs/for=
tran_foo.o
>=20
> # Compile the fortran_bar.f90 file
> /bin/sh ../libtool  --tag=3DFC   --mode=3Dcompile gfortran  -g -O2 -c -o =
fortran_bar.lo fortran_bar.f90
> libtool: compile:  gfortran -g -O2 -c fortran_bar.f90  -fPIC -o .libs/for=
tran_bar.o
>=20
> # Link the two into the libfortran_stuff.so library
> /bin/sh ../libtool  --tag=3DFC   --mode=3Dlink gfortran  -g -O2   -o libf=
ortran_stuff.la -rpath /usr/local/lib fortran_foo.lo fortran_bar.lo =20
> libtool: link: gfortran -shared  -fPIC  .libs/fortran_foo.o .libs/fortran=
_bar.o    -O2   -Wl,-soname -Wl,libfortran_stuff.so.0 -o .libs/libfortran_s=
tuff.so.0.0.0
>=20
> # Make some handy sym links
> libtool: link: (cd ".libs" && rm -f "libfortran_stuff.so.0" && ln -s "lib=
fortran_stuff.so.0.0.0" "libfortran_stuff.so.0")
> libtool: link: (cd ".libs" && rm -f "libfortran_stuff.so" && ln -s "libfo=
rtran_stuff.so.0.0.0" "libfortran_stuff.so")
> libtool: link: ( cd ".libs" && rm -f "libfortran_stuff.la" && ln -s "../l=
ibfortran_stuff.la" "libfortran_stuff.la" )
> -----
>=20
> And here's the (annotated) output from his OS X / PGI Fortran compiler sy=
stem:
>=20
> -----
> Making install in src
>=20
> # Compile the fortran_foo.f90 file
> /bin/sh ../libtool  --tag=3DFC   --mode=3Dcompile pgfortran  -m64 -c -o f=
ortran_foo.lo fortran_foo.f90
> libtool: compile:  pgfortran -m64 -c fortran_foo.f90  -o .libs/fortran_fo=
o.o
>=20
> # Compile the fortran_bar.f90 file
> /bin/sh ../libtool  --tag=3DFC   --mode=3Dcompile pgfortran  -m64 -c -o f=
ortran_bar.lo fortran_bar.f90
> libtool: compile:  pgfortran -m64 -c fortran_bar.f90  -o .libs/fortran_ba=
r.o
>=20
> # Link the two into the libfortran_stuff.so library
> /bin/sh ../libtool  --tag=3DFC   --mode=3Dlink pgfortran  -m64  -m64 -o l=
ibfortran_stuff.la -rpath /Users/fortran/AutomakeBug/autobug14/lib fortran_=
foo.lo fortran_bar.lo =20
> ******* NOTICE THAT THERE'S NO COMMAND HERE TO MAKE THE LIBRARY!
>=20
> # Make some handy sym links
> libtool: link: (cd ".libs" && rm -f "libfortran_stuff.dylib" && ln -s "li=
bfortran_stuff.0.dylib" "libfortran_stuff.dylib")
> libtool: link: ( cd ".libs" && rm -f "libfortran_stuff.la" && ln -s "../l=
ibfortran_stuff.la" "libfortran_stuff.la" )
> -----
>=20
> It looks like Libtool is somehow not issuing the link command to pgfortra=
n to actually create the library.  The sym links are created, but they're p=
resumably dangling.
>=20
> I've attached the following for reference:
>=20
> - PGI outputs: config.log, configure stdout, make V=3D1 install stdout
> - gfortran outputs: ditto
>=20
> --=20
> Jeff Squyres
> jsquyres@HIDDEN
> For corporate legal information go to: http://www.cisco.com/web/about/doi=
ng_business/legal/cri/
> <pgi-output.tar.bz2><gfortran-output.tar.bz2>____________________________=
___________________
> Bug-libtool mailing list
> Bug-libtool@HIDDEN
> https://lists.gnu.org/mailman/listinfo/bug-libtool


--=20
Jeff Squyres
jsquyres@HIDDEN
For corporate legal information go to: http://www.cisco.com/web/about/doing=
_business/legal/cri/





Information forwarded to bug-libtool@HIDDEN:
bug#17094; Package libtool. Full text available.

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From: "Jeff Squyres (jsquyres)" <jsquyres@HIDDEN>
To: "bug-libtool@HIDDEN" <bug-libtool@HIDDEN>
Subject: Libtool bug with PGI Fortran compiler on OS X
Thread-Topic: Libtool bug with PGI Fortran compiler on OS X
Thread-Index: AQHPSDik36fEwPZdIEKQ/1oLlkFKuQ==
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Matt Thompson (CC'ed), an Open MPI user, posted to the Open MPI list recent=
ly stating that he was having trouble installing Open MPI with the PGI comp=
iler on OS X (thread starting here: http://www.open-mpi.org/community/lists=
/users/2014/03/23888.php).

After some back and forth, we think we may have found a bug in Libtool.

I created a trivial autoconf/automake/libtool package for testing:

    https://github.com/jsquyres/pgi-autotool-bug

The project makes a trivial Fortran library comprised of two .f90 source fi=
les.  Here's contents of src/Makefile.am:

-----
lib_LTLIBRARIES =3D libfortran_stuff.la
libfortran_stuff_la_SOURCES =3D fortran_foo.f90 fortran_bar.f90
-----

I made two tarballs for Matt and had him try them both.  One tarball was ma=
de with the GNU Autotools tuple that we use to make Open MPI 1.7.x tarballs=
 (AC 2.69, AM 1.12.2, LT 2.4.2, m4 1.4.16).  The other tarball was with the=
 most recent Automake (1.14.1), just in case this was an AM issue.  Both ta=
rballs exhibit the same behavior on his OS X machine with the PGI Fortran c=
ompiler.

The output from a build seems to indicate a problem with Libtool.  Let me s=
how the problem by contrasting output from "make V=3D1" on my Linux/gfortra=
n based system vs. Matt's OS X / PGI Fortran compiler system.

Here's (annotated) output from Linux/gfortran "make V=3D1":

-----
Making all in src
make[1]: Entering directory `/home/jsquyres/git/pgi-autotool-bug/src'

# Compile the fortran_foo.f90 file
/bin/sh ../libtool  --tag=3DFC   --mode=3Dcompile gfortran  -g -O2 -c -o fo=
rtran_foo.lo fortran_foo.f90
libtool: compile:  gfortran -g -O2 -c fortran_foo.f90  -fPIC -o .libs/fortr=
an_foo.o

# Compile the fortran_bar.f90 file
/bin/sh ../libtool  --tag=3DFC   --mode=3Dcompile gfortran  -g -O2 -c -o fo=
rtran_bar.lo fortran_bar.f90
libtool: compile:  gfortran -g -O2 -c fortran_bar.f90  -fPIC -o .libs/fortr=
an_bar.o

# Link the two into the libfortran_stuff.so library
/bin/sh ../libtool  --tag=3DFC   --mode=3Dlink gfortran  -g -O2   -o libfor=
tran_stuff.la -rpath /usr/local/lib fortran_foo.lo fortran_bar.lo =20
libtool: link: gfortran -shared  -fPIC  .libs/fortran_foo.o .libs/fortran_b=
ar.o    -O2   -Wl,-soname -Wl,libfortran_stuff.so.0 -o .libs/libfortran_stu=
ff.so.0.0.0

# Make some handy sym links
libtool: link: (cd ".libs" && rm -f "libfortran_stuff.so.0" && ln -s "libfo=
rtran_stuff.so.0.0.0" "libfortran_stuff.so.0")
libtool: link: (cd ".libs" && rm -f "libfortran_stuff.so" && ln -s "libfort=
ran_stuff.so.0.0.0" "libfortran_stuff.so")
libtool: link: ( cd ".libs" && rm -f "libfortran_stuff.la" && ln -s "../lib=
fortran_stuff.la" "libfortran_stuff.la" )
-----

And here's the (annotated) output from his OS X / PGI Fortran compiler syst=
em:

-----
Making install in src

# Compile the fortran_foo.f90 file
/bin/sh ../libtool  --tag=3DFC   --mode=3Dcompile pgfortran  -m64 -c -o for=
tran_foo.lo fortran_foo.f90
libtool: compile:  pgfortran -m64 -c fortran_foo.f90  -o .libs/fortran_foo.=
o

# Compile the fortran_bar.f90 file
/bin/sh ../libtool  --tag=3DFC   --mode=3Dcompile pgfortran  -m64 -c -o for=
tran_bar.lo fortran_bar.f90
libtool: compile:  pgfortran -m64 -c fortran_bar.f90  -o .libs/fortran_bar.=
o

# Link the two into the libfortran_stuff.so library
/bin/sh ../libtool  --tag=3DFC   --mode=3Dlink pgfortran  -m64  -m64 -o lib=
fortran_stuff.la -rpath /Users/fortran/AutomakeBug/autobug14/lib fortran_fo=
o.lo fortran_bar.lo =20
******* NOTICE THAT THERE'S NO COMMAND HERE TO MAKE THE LIBRARY!

# Make some handy sym links
libtool: link: (cd ".libs" && rm -f "libfortran_stuff.dylib" && ln -s "libf=
ortran_stuff.0.dylib" "libfortran_stuff.dylib")
libtool: link: ( cd ".libs" && rm -f "libfortran_stuff.la" && ln -s "../lib=
fortran_stuff.la" "libfortran_stuff.la" )
-----

It looks like Libtool is somehow not issuing the link command to pgfortran =
to actually create the library.  The sym links are created, but they're pre=
sumably dangling.

I've attached the following for reference:

- PGI outputs: config.log, configure stdout, make V=3D1 install stdout
- gfortran outputs: ditto

--=20
Jeff Squyres
jsquyres@HIDDEN
For corporate legal information go to: http://www.cisco.com/web/about/doing=
_business/legal/cri/

--_003_32AF3A525A9E4E6AB4C78940D7519D37ciscocom_
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--_003_32AF3A525A9E4E6AB4C78940D7519D37ciscocom_--




Acknowledgement sent to "Jeff Squyres (jsquyres)" <jsquyres@HIDDEN>:
New bug report received and forwarded. Copy sent to bug-libtool@HIDDEN. Full text available.
Report forwarded to bug-libtool@HIDDEN:
bug#17094; Package libtool. Full text available.
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Copyright (C) 1999 Darren O. Benham, 1997 nCipher Corporation Ltd, 1994-97 Ian Jackson.