GNU bug report logs - #27858
Conda (on guix) does not activate environments

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Package: guix; Reported by: Frederick Muriithi <fredmanglis@HIDDEN>; dated Fri, 28 Jul 2017 05:51:02 UTC; Maintainer for guix is bug-guix@HIDDEN.

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From: Frederick Muriithi <fredmanglis@HIDDEN>
Date: Fri, 28 Jul 2017 13:20:50 +0300
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Subject: Re: bug#27858: Conda (on guix) does not activate environments
To: Pjotr Prins <pjotr.public12@HIDDEN>
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Additional Information

When installed from conda's documentation, conda installs the
following packages into conda's root environment by default:

asn1crypto, cffi, conda, conda-env, cryptography, idna, libffi,
openssl, packaging, pip, pycosat, pycparser, pyopenssl, pyparsing,
python, readline, requests, ruamel_yaml, setuptools, six, sqlite, tk,
wheel, xz, yaml, zlib


These do not exists in the root environment of the conda installed via guix.




Information forwarded to bug-guix@HIDDEN:
bug#27858; Package guix. Full text available.

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From: Frederick Muriithi <fredmanglis@HIDDEN>
Date: Fri, 28 Jul 2017 12:42:58 +0300
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Subject: Re: bug#27858: Conda (on guix) does not activate environments
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1) Install conda into a profile:

    guix package --install=conda --profile=$HOME/guix_profiles/conda

2) Activate the profile:

    source $HOME/guix_profiles/conda/etc/profile

3) Create an environment with conda and install biopython

    conda create --name test-env biopython

4) Try to activate the environment (here's where it fails)

    source activate test-env




Information forwarded to bug-guix@HIDDEN:
bug#27858; Package guix. Full text available.

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Date: Fri, 28 Jul 2017 11:36:42 +0200
From: Pjotr Prins <pjotr.public12@HIDDEN>
To: Frederick Muriithi <fredmanglis@HIDDEN>
Subject: Re: bug#27858: Conda (on guix) does not activate environments
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Hi Fred,

Can you send the exact commands you are using so we can replicate the
issue?

Pj.

-- 




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bug#27858; Package guix. Full text available.

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From: Frederick Muriithi <fredmanglis@HIDDEN>
Date: Fri, 28 Jul 2017 08:49:26 +0300
Message-ID: <CALjrZwatbyJ+8-GGXEBG8aGjfWMDY0MnNEiL2kKS6b2mFtc9Mg@HIDDEN>
Subject: Conda (on guix) does not activate environments
To: bug-guix@HIDDEN
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I have come across a bug on conda, installed via guix, that does not
seem to be present when conda is installed via the process at
https://conda.io/docs/install/quick.html#linux-miniconda-install

The issue
---------
Conda (on guix) does not activate environments

Command ran
-----------
source activate test-env

Expected result
---------------
The envinment should be activated, and the prompt changes from
`frederick@localhost:/tmp$` to `(test-guix-conda)
frederick@localhost:/tmp$`

Actual result
-------------
The terminal window is exited.

Additional information
----------------------
This behaviour is not present on conda installed via the process
presented in the conda documentation.

The environment(s) created by conda on guix are available on, and can
be activated by conda installed via the process in the conda
documentation.

I ran `bash -c "source activate test-env"` and the following error
message was displayed:

/gnu/store/f2dr9xbimg93pljm7xgmqb4cm5bxy98r-conda-4.3.16/bin/.deactivate-real:
line 59: return: can only `return' from a function or sourced script
/gnu/store/f2dr9xbimg93pljm7xgmqb4cm5bxy98r-conda-4.3.16/bin/.deactivate-real:
line 94: return: can only `return' from a function or sourced script

I would appreciate any help that would help in resolving this issue.




Acknowledgement sent to Frederick Muriithi <fredmanglis@HIDDEN>:
New bug report received and forwarded. Copy sent to bug-guix@HIDDEN. Full text available.
Report forwarded to bug-guix@HIDDEN:
bug#27858; Package guix. Full text available.
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