GNU bug report logs - #30282
Julia 0.6.0 fails tests

Please note: This is a static page, with minimal formatting, updated once a day.
Click here to see this page with the latest information and nicer formatting.

Package: guix; Reported by: Marco van Hulten <marco@HIDDEN>; dated Sun, 28 Jan 2018 23:44:01 UTC; Maintainer for guix is bug-guix@HIDDEN.

Message received at 30282 <at> debbugs.gnu.org:


Received: (at 30282) by debbugs.gnu.org; 19 Mar 2018 19:14:19 +0000
From debbugs-submit-bounces <at> debbugs.gnu.org Mon Mar 19 15:14:19 2018
Received: from localhost ([127.0.0.1]:42154 helo=debbugs.gnu.org)
	by debbugs.gnu.org with esmtp (Exim 4.84_2)
	(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
	id 1ey0Ed-0000m8-2J
	for submit <at> debbugs.gnu.org; Mon, 19 Mar 2018 15:14:19 -0400
Received: from mail.thebird.nl ([95.154.246.10]:49937)
 by debbugs.gnu.org with esmtp (Exim 4.84_2)
 (envelope-from <pjotr2017@HIDDEN>) id 1ey0Eb-0000lv-GU
 for 30282 <at> debbugs.gnu.org; Mon, 19 Mar 2018 15:14:17 -0400
Received: by mail.thebird.nl (Postfix, from userid 502)
 id EDA401248D7; Mon, 19 Mar 2018 20:09:56 +0100 (CET)
Date: Mon, 19 Mar 2018 20:09:56 +0100
From: Pjotr Prins <pjotr.public12@HIDDEN>
To: Ludovic =?iso-8859-1?Q?Court=E8s?= <ludo@HIDDEN>
Subject: Re: bug#30282: package julia build error
Message-ID: <20180319190956.GA17297@HIDDEN>
References: <20180128234305.03c958b0@HIDDEN>
 <87607a5ckn.fsf@HIDDEN> <87po49mis5.fsf@HIDDEN>
 <20180313095726.GA12663@HIDDEN>
 <20180313115820.GA13258@HIDDEN> <873713q580.fsf@HIDDEN>
 <20180313175418.GA20606@jurong> <20180313213557.GA15602@HIDDEN>
 <20180316140756.GA30730@HIDDEN> <87d102o8bj.fsf@HIDDEN>
MIME-Version: 1.0
Content-Type: text/plain; charset=utf-8
Content-Disposition: inline
Content-Transfer-Encoding: 8bit
In-Reply-To: <87d102o8bj.fsf@HIDDEN>
User-Agent: Mutt/1.5.21 (2010-09-15)
X-Spam-Score: -0.0 (/)
X-Debbugs-Envelope-To: 30282
Cc: Pjotr Prins <pjotr.public12@HIDDEN>, 30282 <at> debbugs.gnu.org,
 Andreas Enge <andreas@HIDDEN>, Marco van Hulten <marco@HIDDEN>
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: -0.0 (/)

On Sat, Mar 17, 2018 at 07:39:28PM +0100, Ludovic Courtès wrote:
> It’s a bit weird that 0.6.0 tests passed at some point in Guix, and
> eventually started failing.  Not sure what happened.

Probably an openblas or LLVM update. Unfortunately hydra no longer has
the logs.

Pj.
-- 




Information forwarded to bug-guix@HIDDEN:
bug#30282; Package guix. Full text available.

Message received at 30282 <at> debbugs.gnu.org:


Received: (at 30282) by debbugs.gnu.org; 17 Mar 2018 18:39:35 +0000
From debbugs-submit-bounces <at> debbugs.gnu.org Sat Mar 17 14:39:35 2018
Received: from localhost ([127.0.0.1]:38664 helo=debbugs.gnu.org)
	by debbugs.gnu.org with esmtp (Exim 4.84_2)
	(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
	id 1exGjv-0006B0-1a
	for submit <at> debbugs.gnu.org; Sat, 17 Mar 2018 14:39:35 -0400
Received: from hera.aquilenet.fr ([185.233.100.1]:48086)
 by debbugs.gnu.org with esmtp (Exim 4.84_2)
 (envelope-from <ludo@HIDDEN>) id 1exGjt-0006Aq-1q
 for 30282 <at> debbugs.gnu.org; Sat, 17 Mar 2018 14:39:33 -0400
Received: from localhost (localhost [127.0.0.1])
 by hera.aquilenet.fr (Postfix) with ESMTP id 5227D131FF;
 Sat, 17 Mar 2018 19:39:32 +0100 (CET)
X-Virus-Scanned: Debian amavisd-new at aquilenet.fr
Received: from hera.aquilenet.fr ([127.0.0.1])
 by localhost (hera.aquilenet.fr [127.0.0.1]) (amavisd-new, port 10024)
 with ESMTP id tuD_TgG2Hx8f; Sat, 17 Mar 2018 19:39:30 +0100 (CET)
Received: from ribbon (unknown [IPv6:2a01:e0a:1d:7270:af76:b9b:ca24:c465])
 by hera.aquilenet.fr (Postfix) with ESMTPSA id 349E512DDA;
 Sat, 17 Mar 2018 19:39:30 +0100 (CET)
From: ludo@HIDDEN (Ludovic =?utf-8?Q?Court=C3=A8s?=)
To: Pjotr Prins <pjotr.public12@HIDDEN>
Subject: Re: bug#30282: package julia build error
References: <20180128234305.03c958b0@HIDDEN>
 <87607a5ckn.fsf@HIDDEN> <87po49mis5.fsf@HIDDEN>
 <20180313095726.GA12663@HIDDEN>
 <20180313115820.GA13258@HIDDEN> <873713q580.fsf@HIDDEN>
 <20180313175418.GA20606@jurong> <20180313213557.GA15602@HIDDEN>
 <20180316140756.GA30730@HIDDEN>
X-URL: http://www.fdn.fr/~lcourtes/
X-Revolutionary-Date: 27 =?utf-8?Q?Vent=C3=B4se?= an 226 de la =?utf-8?Q?R?=
 =?utf-8?Q?=C3=A9volution?=
X-PGP-Key-ID: 0x090B11993D9AEBB5
X-PGP-Key: http://www.fdn.fr/~lcourtes/ludovic.asc
X-PGP-Fingerprint: 3CE4 6455 8A84 FDC6 9DB4  0CFB 090B 1199 3D9A EBB5
X-OS: x86_64-pc-linux-gnu
Date: Sat, 17 Mar 2018 19:39:28 +0100
In-Reply-To: <20180316140756.GA30730@HIDDEN> (Pjotr Prins's message of
 "Fri, 16 Mar 2018 15:07:56 +0100")
Message-ID: <87d102o8bj.fsf@HIDDEN>
User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/25.3 (gnu/linux)
MIME-Version: 1.0
Content-Type: text/plain; charset=utf-8
Content-Transfer-Encoding: quoted-printable
X-Spam-Score: 1.0 (+)
X-Debbugs-Envelope-To: 30282
Cc: Andreas Enge <andreas@HIDDEN>, 30282 <at> debbugs.gnu.org,
 Marco van Hulten <marco@HIDDEN>
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: 1.0 (+)

Hey Pjotr,

Pjotr Prins <pjotr.public12@HIDDEN> skribis:

> ls deps/scratch/=20
>
>     arpack-ng-3.3.0
>     cmake-3.7.1-Linux-x86_64
>     curl-7.53.1
>     dsfmt-2.2.3
>     fftw-3.3.6-pl1-double
>     fftw-3.3.6-pl1-single
>     gmp-6.1.2
>     libgit2-2fcb8705e584ca61f6c4657525c9d2713f6a39d2
>     libssh2-30e9c1347e3b8baa2951db612f05e6d87fc8e2f2
>     libunwind-1.1-julia2
>     libuv-52d72a52cc7ccd570929990f010ed16e2ec604c8
>     llvm-3.9.1
>     mbedtls-2.3.0-gpl
>     mpfr-3.1.5
>     openblas-85636ff1a015d04d3a8f960bc644b85ee5157135
>     openlibm-1581174c85f7b645b15ba1ac1c3a98fb601f0fe7
>     openspecfun-39699a1c1824bf88410cabb8a7438af91ea98f4c
>     patchelf-0.9
>     pcre2-10.23
>     SuiteSparse-4.4.5
>     utf8proc-40e605959eb5cb90b2587fa88e3b661558fbc55a
>
> ls deps/patches/
>
>     arpack-tests-blasint.patch         llvm-3.7.1.patch                  =
      llvm-D28759-loopclearance.patch
>     compiler-rt-3.7.1.patch            llvm-3.7.1_symlinks.patch         =
      llvm-D28786-callclearance.patch
>     dSFMT.c.patch                      llvm-3.8.0_bindir.patch           =
      llvm-D9168_argument_alignment.patch
>     dSFMT.h.patch                      llvm-3.8.0_ppc64_SUBFC8.patch     =
      llvm-nodllalias.patch
>     gmp-exception.patch                llvm-3.8.0_threads.patch          =
      llvm-PR22923.patch
>     instcombine-llvm-3.3.patch         llvm-3.8.0_winshlib.patch         =
      llvm-PR26180.patch
>     int128-vector.llvm-3.3.patch       llvm-3.8.1-version.patch          =
      llvm-PR27046.patch
>     libgit2-agent-nonfatal.patch       llvm-3.9.0_cygwin.patch           =
      llvm-PR276266.patch
>     libgit2-free-config.patch          llvm-3.9.0_D27296-libssp.patch    =
      llvm-PR277939.patch
>     libgit2-gitconfig-symlink.patch    llvm-3.9.0_threads.patch          =
      llvm-PR278088.patch
>     libgit2-mbedtls.patch              llvm-3.9.0_win64-reloc-dwarf.patch=
      llvm-PR278321.patch
>     libgit2-mbedtls-verify.patch       llvm-arm-fix-prel31.patch         =
      llvm-PR278923.patch
>     libgit2-mbedtls-writer-fix.patch   llvm-D14260.patch                 =
      llvm-PR29010-i386-xmm.patch
>     libgit2-remote-push-NULL.patch     llvm-D17165-D18583.patch          =
      llvm-r282182.patch
>     libgit2-ssh.patch                  llvm-D17326_unpack_load.patch     =
      llvm-rL279933-ppc-atomicrmw-lowering.patch
>     libssh2-encryptedpem.patch         llvm-D17712.patch                 =
      llvm-rL293230-icc17-cmake.patch
>     libssh2-netinet-in.patch           llvm-D21271-instcombine-tbaa-3.7.p=
atch  llvm-win64-reloc-dwarf.patch
>     libunwind-arm-dyn.patch            llvm-D21271-instcombine-tbaa-3.8.p=
atch  mbedtls-ssl.h.patch
>     libunwind-arm-pc-offset.patch      llvm-D23597_sdag_names.patch      =
      openblas-clangasmbug.patch
>     libunwind-dwarf-ver.patch          llvm-D24300_ptx_intrinsics.patch  =
      openblas-cross-compile.patch
>     libunwind-freebsd-mapper.patch     llvm-D25865-cmakeshlib.patch      =
      openblas-freebsd.patch
>     libunwind-prefer-extbl.patch       llvm-D27389.patch                 =
      openblas-power-assembly-fixes.patch
>     lldb-3.7.1.patch                   llvm-D27397.patch                 =
      osx-10.10.llvm-3.3.patch
>     llvm-3.3.patch                     llvm-D27609-AArch64-UABS_G3.patch =
      pcre-mingw.patch
>     llvm-3.7.0.patch                   llvm-D27629-AArch64-large_model.pa=
tch   SuiteSparse-winclang.patch
>     llvm-3.7.1_2.patch                 llvm-D28009.patch                 =
      win64-int128.llvm-3.3.patch
>     llvm-3.7.1_3.patch                 llvm-D28215_FreeBSD_shlib.patch
>     llvm-3.7.1_destsharedlibdir.patch  llvm-D28221-avx512.patch
>
> I mean, seriously!

Yeah.  :-/

> As I wrote before, the test of the current Guix build probably fails due =
to the
> openblas linkage Guix uses (openblas output does change and depends on bu=
ild
> choices). Not sure which switch is causing it, but it should be fixable. =
There
> are more tests failing, however, that need fixing.=20

Indeed there=E2=80=99s always the possibility that test failures are due to=
 a
missing patch.

> For version 7 Julia promises no longer to patch LLVM, see=20
>
>   https://discourse.julialang.org/t/why-is-source-build-julia-required-to=
-use-gpu-packages/9747/2
>
> So, unless someone feels incensed to fix things, I propose to hold out un=
til
> Julia7 and maybe have another go again.=20

That sounds reasonable.

It=E2=80=99s a bit weird that 0.6.0 tests passed at some point in Guix, and
eventually started failing.  Not sure what happened.

Ludo=E2=80=99.




Information forwarded to bug-guix@HIDDEN:
bug#30282; Package guix. Full text available.

Message received at 30282 <at> debbugs.gnu.org:


Received: (at 30282) by debbugs.gnu.org; 16 Mar 2018 14:12:17 +0000
From debbugs-submit-bounces <at> debbugs.gnu.org Fri Mar 16 10:12:17 2018
Received: from localhost ([127.0.0.1]:36988 helo=debbugs.gnu.org)
	by debbugs.gnu.org with esmtp (Exim 4.84_2)
	(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
	id 1ewq5h-00057O-4d
	for submit <at> debbugs.gnu.org; Fri, 16 Mar 2018 10:12:17 -0400
Received: from mail.thebird.nl ([95.154.246.10]:44486)
 by debbugs.gnu.org with esmtp (Exim 4.84_2)
 (envelope-from <pjotr2017@HIDDEN>) id 1ewq5e-000577-GI
 for 30282 <at> debbugs.gnu.org; Fri, 16 Mar 2018 10:12:15 -0400
Received: by mail.thebird.nl (Postfix, from userid 502)
 id E79DA1248D7; Fri, 16 Mar 2018 15:07:56 +0100 (CET)
Date: Fri, 16 Mar 2018 15:07:56 +0100
From: Pjotr Prins <pjotr.public12@HIDDEN>
To: Pjotr Prins <pjotr.public12@HIDDEN>
Subject: Re: bug#30282: package julia build error
Message-ID: <20180316140756.GA30730@HIDDEN>
References: <20180128234305.03c958b0@HIDDEN>
 <87607a5ckn.fsf@HIDDEN> <87po49mis5.fsf@HIDDEN>
 <20180313095726.GA12663@HIDDEN>
 <20180313115820.GA13258@HIDDEN> <873713q580.fsf@HIDDEN>
 <20180313175418.GA20606@jurong> <20180313213557.GA15602@HIDDEN>
MIME-Version: 1.0
Content-Type: text/plain; charset=us-ascii
Content-Disposition: inline
In-Reply-To: <20180313213557.GA15602@HIDDEN>
User-Agent: Mutt/1.5.21 (2010-09-15)
X-Spam-Score: -0.0 (/)
X-Debbugs-Envelope-To: 30282
Cc: Andreas Enge <andreas@HIDDEN>, 30282 <at> debbugs.gnu.org,
 Ludovic =?iso-8859-1?Q?Court=E8s?= <ludo@HIDDEN>,
 Marco van Hulten <marco@HIDDEN>
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: -0.0 (/)

After some investigation I have found Julia's build system to be a
challenge. The problem is that, to 'control' the environment, the
developers have chosen to fixate all dependencies by pulling them in
and patching them (including LLVM). The only time I got a successful
build outside Guix was by using the exact gcc/g++/gfortran-4.7
compilers (no earlier and no later versions) and letting Julia have
its way downloading and building openblas, etc. All Julia tests pass
if it is done this way.

I tried to build Julia in a Guix environment - adding dependencies one
by one - and this failed spectularly too. Turns out that Julia is very
specific about the compilers and dependencies it uses, which is OK,
but it downloads dependencies from source and patches them, which is
not great. Worst, the whole build system is based on defaults - so if
you change anything things start failing.

I.e., you try to change anything, such as using the system openblas
libs, and the Julia build system gets confused. It should work,
according to the docs, but I can't even get it to a compiled stage
this way. These are the things Julia 0.6.0 downloads and builds:

ls deps/scratch/ 

    arpack-ng-3.3.0
    cmake-3.7.1-Linux-x86_64
    curl-7.53.1
    dsfmt-2.2.3
    fftw-3.3.6-pl1-double
    fftw-3.3.6-pl1-single
    gmp-6.1.2
    libgit2-2fcb8705e584ca61f6c4657525c9d2713f6a39d2
    libssh2-30e9c1347e3b8baa2951db612f05e6d87fc8e2f2
    libunwind-1.1-julia2
    libuv-52d72a52cc7ccd570929990f010ed16e2ec604c8
    llvm-3.9.1
    mbedtls-2.3.0-gpl
    mpfr-3.1.5
    openblas-85636ff1a015d04d3a8f960bc644b85ee5157135
    openlibm-1581174c85f7b645b15ba1ac1c3a98fb601f0fe7
    openspecfun-39699a1c1824bf88410cabb8a7438af91ea98f4c
    patchelf-0.9
    pcre2-10.23
    SuiteSparse-4.4.5
    utf8proc-40e605959eb5cb90b2587fa88e3b661558fbc55a

ls deps/patches/

    arpack-tests-blasint.patch         llvm-3.7.1.patch                        llvm-D28759-loopclearance.patch
    compiler-rt-3.7.1.patch            llvm-3.7.1_symlinks.patch               llvm-D28786-callclearance.patch
    dSFMT.c.patch                      llvm-3.8.0_bindir.patch                 llvm-D9168_argument_alignment.patch
    dSFMT.h.patch                      llvm-3.8.0_ppc64_SUBFC8.patch           llvm-nodllalias.patch
    gmp-exception.patch                llvm-3.8.0_threads.patch                llvm-PR22923.patch
    instcombine-llvm-3.3.patch         llvm-3.8.0_winshlib.patch               llvm-PR26180.patch
    int128-vector.llvm-3.3.patch       llvm-3.8.1-version.patch                llvm-PR27046.patch
    libgit2-agent-nonfatal.patch       llvm-3.9.0_cygwin.patch                 llvm-PR276266.patch
    libgit2-free-config.patch          llvm-3.9.0_D27296-libssp.patch          llvm-PR277939.patch
    libgit2-gitconfig-symlink.patch    llvm-3.9.0_threads.patch                llvm-PR278088.patch
    libgit2-mbedtls.patch              llvm-3.9.0_win64-reloc-dwarf.patch      llvm-PR278321.patch
    libgit2-mbedtls-verify.patch       llvm-arm-fix-prel31.patch               llvm-PR278923.patch
    libgit2-mbedtls-writer-fix.patch   llvm-D14260.patch                       llvm-PR29010-i386-xmm.patch
    libgit2-remote-push-NULL.patch     llvm-D17165-D18583.patch                llvm-r282182.patch
    libgit2-ssh.patch                  llvm-D17326_unpack_load.patch           llvm-rL279933-ppc-atomicrmw-lowering.patch
    libssh2-encryptedpem.patch         llvm-D17712.patch                       llvm-rL293230-icc17-cmake.patch
    libssh2-netinet-in.patch           llvm-D21271-instcombine-tbaa-3.7.patch  llvm-win64-reloc-dwarf.patch
    libunwind-arm-dyn.patch            llvm-D21271-instcombine-tbaa-3.8.patch  mbedtls-ssl.h.patch
    libunwind-arm-pc-offset.patch      llvm-D23597_sdag_names.patch            openblas-clangasmbug.patch
    libunwind-dwarf-ver.patch          llvm-D24300_ptx_intrinsics.patch        openblas-cross-compile.patch
    libunwind-freebsd-mapper.patch     llvm-D25865-cmakeshlib.patch            openblas-freebsd.patch
    libunwind-prefer-extbl.patch       llvm-D27389.patch                       openblas-power-assembly-fixes.patch
    lldb-3.7.1.patch                   llvm-D27397.patch                       osx-10.10.llvm-3.3.patch
    llvm-3.3.patch                     llvm-D27609-AArch64-UABS_G3.patch       pcre-mingw.patch
    llvm-3.7.0.patch                   llvm-D27629-AArch64-large_model.patch   SuiteSparse-winclang.patch
    llvm-3.7.1_2.patch                 llvm-D28009.patch                       win64-int128.llvm-3.3.patch
    llvm-3.7.1_3.patch                 llvm-D28215_FreeBSD_shlib.patch
    llvm-3.7.1_destsharedlibdir.patch  llvm-D28221-avx512.patch

I mean, seriously!

As I wrote before, the test of the current Guix build probably fails due to the
openblas linkage Guix uses (openblas output does change and depends on build
choices). Not sure which switch is causing it, but it should be fixable. There
are more tests failing, however, that need fixing. 

For version 7 Julia promises no longer to patch LLVM, see 

  https://discourse.julialang.org/t/why-is-source-build-julia-required-to-use-gpu-packages/9747/2

So, unless someone feels incensed to fix things, I propose to hold out until
Julia7 and maybe have another go again. 

Pj.




Information forwarded to bug-guix@HIDDEN:
bug#30282; Package guix. Full text available.

Message received at 30282 <at> debbugs.gnu.org:


Received: (at 30282) by debbugs.gnu.org; 13 Mar 2018 21:40:16 +0000
From debbugs-submit-bounces <at> debbugs.gnu.org Tue Mar 13 17:40:15 2018
Received: from localhost ([127.0.0.1]:60055 helo=debbugs.gnu.org)
	by debbugs.gnu.org with esmtp (Exim 4.84_2)
	(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
	id 1evreZ-0008F7-NL
	for submit <at> debbugs.gnu.org; Tue, 13 Mar 2018 17:40:15 -0400
Received: from mail.thebird.nl ([95.154.246.10]:39375)
 by debbugs.gnu.org with esmtp (Exim 4.84_2)
 (envelope-from <pjotr2017@HIDDEN>) id 1evreW-0008Eq-1f
 for 30282 <at> debbugs.gnu.org; Tue, 13 Mar 2018 17:40:12 -0400
Received: by mail.thebird.nl (Postfix, from userid 502)
 id 2E6571248D7; Tue, 13 Mar 2018 22:35:57 +0100 (CET)
Date: Tue, 13 Mar 2018 22:35:57 +0100
From: Pjotr Prins <pjotr.public12@HIDDEN>
To: Andreas Enge <andreas@HIDDEN>
Subject: Re: bug#30282: package julia build error
Message-ID: <20180313213557.GA15602@HIDDEN>
References: <20180128234305.03c958b0@HIDDEN>
 <87607a5ckn.fsf@HIDDEN> <87po49mis5.fsf@HIDDEN>
 <20180313095726.GA12663@HIDDEN>
 <20180313115820.GA13258@HIDDEN> <873713q580.fsf@HIDDEN>
 <20180313175418.GA20606@jurong>
MIME-Version: 1.0
Content-Type: text/plain; charset=utf-8
Content-Disposition: inline
Content-Transfer-Encoding: 8bit
In-Reply-To: <20180313175418.GA20606@jurong>
User-Agent: Mutt/1.5.21 (2010-09-15)
X-Spam-Score: -0.0 (/)
X-Debbugs-Envelope-To: 30282
Cc: Ludovic =?iso-8859-1?Q?Court=E8s?= <ludo@HIDDEN>, 30282 <at> debbugs.gnu.org,
 Pjotr Prins <pjotr.public12@HIDDEN>, Marco van Hulten <marco@HIDDEN>
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: -0.0 (/)

On Tue, Mar 13, 2018 at 06:54:18PM +0100, Andreas Enge wrote:
> Hello,
> 
> On Tue, Mar 13, 2018 at 06:02:07PM +0100, Ludovic Courtès wrote:
> > I tried the patch below (README.md in Julia 0.6.0 says that plain LLVM
> > 3.9 without patches is OK), but that didn’t solve the
> > distributed.jl-related test failures.
> 
> there is a 0.6.2 version already. I do not expect it to solve test failures,
> but it might make sense to try an update first.

I am on 0.6.2. Not sure where it will end. Starting to appreciate
Julia a little (as a language, not as a deployment). It is a fast LISP
with Ruby syntax ;)

Pj.
-- 




Information forwarded to bug-guix@HIDDEN:
bug#30282; Package guix. Full text available.

Message received at 30282 <at> debbugs.gnu.org:


Received: (at 30282) by debbugs.gnu.org; 13 Mar 2018 17:54:24 +0000
From debbugs-submit-bounces <at> debbugs.gnu.org Tue Mar 13 13:54:24 2018
Received: from localhost ([127.0.0.1]:59805 helo=debbugs.gnu.org)
	by debbugs.gnu.org with esmtp (Exim 4.84_2)
	(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
	id 1evo7z-0000DR-05
	for submit <at> debbugs.gnu.org; Tue, 13 Mar 2018 13:54:24 -0400
Received: from hera.aquilenet.fr ([185.233.100.1]:34392)
 by debbugs.gnu.org with esmtp (Exim 4.84_2)
 (envelope-from <andreas@HIDDEN>) id 1evo7y-0000DK-2F
 for 30282 <at> debbugs.gnu.org; Tue, 13 Mar 2018 13:54:22 -0400
Received: from localhost (localhost [127.0.0.1])
 by hera.aquilenet.fr (Postfix) with ESMTP id DAAD5127CB;
 Tue, 13 Mar 2018 18:54:20 +0100 (CET)
X-Virus-Scanned: Debian amavisd-new at aquilenet.fr
Received: from hera.aquilenet.fr ([127.0.0.1])
 by localhost (hera.aquilenet.fr [127.0.0.1]) (amavisd-new, port 10024)
 with ESMTP id ZjhtO2hiMpOj; Tue, 13 Mar 2018 18:54:20 +0100 (CET)
Received: from jurong (eth-west-pareq2-46-193-3-68.wb.wifirst.net
 [46.193.3.68])
 by hera.aquilenet.fr (Postfix) with ESMTPSA id F13371277B;
 Tue, 13 Mar 2018 18:54:19 +0100 (CET)
Date: Tue, 13 Mar 2018 18:54:18 +0100
From: Andreas Enge <andreas@HIDDEN>
To: Ludovic =?iso-8859-15?Q?Court=E8s?= <ludo@HIDDEN>
Subject: Re: bug#30282: package julia build error
Message-ID: <20180313175418.GA20606@jurong>
References: <20180128234305.03c958b0@HIDDEN>
 <87607a5ckn.fsf@HIDDEN> <87po49mis5.fsf@HIDDEN>
 <20180313095726.GA12663@HIDDEN>
 <20180313115820.GA13258@HIDDEN> <873713q580.fsf@HIDDEN>
MIME-Version: 1.0
Content-Type: text/plain; charset=utf-8
Content-Disposition: inline
Content-Transfer-Encoding: 8bit
In-Reply-To: <873713q580.fsf@HIDDEN>
User-Agent: Mutt/1.9.3 (2018-01-21)
X-Spam-Score: -0.0 (/)
X-Debbugs-Envelope-To: 30282
Cc: Pjotr Prins <pjotr.public12@HIDDEN>, 30282 <at> debbugs.gnu.org,
 Marco van Hulten <marco@HIDDEN>
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: -0.0 (/)

Hello,

On Tue, Mar 13, 2018 at 06:02:07PM +0100, Ludovic Courtès wrote:
> I tried the patch below (README.md in Julia 0.6.0 says that plain LLVM
> 3.9 without patches is OK), but that didn’t solve the
> distributed.jl-related test failures.

there is a 0.6.2 version already. I do not expect it to solve test failures,
but it might make sense to try an update first.

Andreas





Information forwarded to bug-guix@HIDDEN:
bug#30282; Package guix. Full text available.

Message received at 30282 <at> debbugs.gnu.org:


Received: (at 30282) by debbugs.gnu.org; 13 Mar 2018 17:02:16 +0000
From debbugs-submit-bounces <at> debbugs.gnu.org Tue Mar 13 13:02:16 2018
Received: from localhost ([127.0.0.1]:59776 helo=debbugs.gnu.org)
	by debbugs.gnu.org with esmtp (Exim 4.84_2)
	(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
	id 1evnJY-0007KW-Ak
	for submit <at> debbugs.gnu.org; Tue, 13 Mar 2018 13:02:16 -0400
Received: from hera.aquilenet.fr ([185.233.100.1]:33950)
 by debbugs.gnu.org with esmtp (Exim 4.84_2)
 (envelope-from <ludo@HIDDEN>) id 1evnJS-0007KI-Nv
 for 30282 <at> debbugs.gnu.org; Tue, 13 Mar 2018 13:02:11 -0400
Received: from localhost (localhost [127.0.0.1])
 by hera.aquilenet.fr (Postfix) with ESMTP id 74814127B2;
 Tue, 13 Mar 2018 18:02:09 +0100 (CET)
X-Virus-Scanned: Debian amavisd-new at aquilenet.fr
Received: from hera.aquilenet.fr ([127.0.0.1])
 by localhost (hera.aquilenet.fr [127.0.0.1]) (amavisd-new, port 10024)
 with ESMTP id wx3ZdWDWym-y; Tue, 13 Mar 2018 18:02:07 +0100 (CET)
Received: from ribbon (vpn-0-27.aquilenet.fr [IPv6:2a0c:e300:4:27::])
 by hera.aquilenet.fr (Postfix) with ESMTPSA id A9075127B3;
 Tue, 13 Mar 2018 18:02:07 +0100 (CET)
From: ludo@HIDDEN (Ludovic =?utf-8?Q?Court=C3=A8s?=)
To: Pjotr Prins <pjotr.public12@HIDDEN>
Subject: Re: bug#30282: package julia build error
References: <20180128234305.03c958b0@HIDDEN>
 <87607a5ckn.fsf@HIDDEN> <87po49mis5.fsf@HIDDEN>
 <20180313095726.GA12663@HIDDEN>
 <20180313115820.GA13258@HIDDEN>
X-URL: http://www.fdn.fr/~lcourtes/
X-Revolutionary-Date: 23 =?utf-8?Q?Vent=C3=B4se?= an 226 de la =?utf-8?Q?R?=
 =?utf-8?Q?=C3=A9volution?=
X-PGP-Key-ID: 0x090B11993D9AEBB5
X-PGP-Key: http://www.fdn.fr/~lcourtes/ludovic.asc
X-PGP-Fingerprint: 3CE4 6455 8A84 FDC6 9DB4  0CFB 090B 1199 3D9A EBB5
X-OS: x86_64-pc-linux-gnu
Date: Tue, 13 Mar 2018 18:02:07 +0100
In-Reply-To: <20180313115820.GA13258@HIDDEN> (Pjotr Prins's message of
 "Tue, 13 Mar 2018 12:58:20 +0100")
Message-ID: <873713q580.fsf@HIDDEN>
User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/25.3 (gnu/linux)
MIME-Version: 1.0
Content-Type: multipart/mixed; boundary="=-=-="
X-Spam-Score: 1.0 (+)
X-Debbugs-Envelope-To: 30282
Cc: 30282 <at> debbugs.gnu.org, Marco van Hulten <marco@HIDDEN>
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: 1.0 (+)

--=-=-=
Content-Type: text/plain; charset=utf-8
Content-Transfer-Encoding: quoted-printable

Hi Pjotr,

Pjotr Prins <pjotr.public12@HIDDEN> skribis:

> One immediate problem is that Julia comes with patches for LLVM 3.9
> only:
>
>   https://github.com/JuliaLang/julia#llvm
>
> it downloads, patches and compiles a specific LLVM. We actually need
> this even though the failing tests are possibly not related (I suspect
> the math libraries are not showing the same results as the built-in
> ones).

Oh, indeed.

For arpack-ng using the right version did help.  It might be similar for
other dependencies.

I tried the patch below (README.md in Julia 0.6.0 says that plain LLVM
3.9 without patches is OK), but that didn=E2=80=99t solve the
distributed.jl-related test failures.

> I think we need to follow the recommended build steps for Julia first.
> Then the tests should pass. Next perhaps link out components and send
> bug reports upstream.

Yeah, though we=E2=80=99d rather extract these bundled pieces somehow.

Thanks,
Ludo=E2=80=99.


--=-=-=
Content-Type: text/x-patch
Content-Disposition: inline

diff --git a/gnu/packages/julia.scm b/gnu/packages/julia.scm
index 41bbc66dd..8e5e81314 100644
--- a/gnu/packages/julia.scm
+++ b/gnu/packages/julia.scm
@@ -314,7 +314,7 @@
         "USE_SYSTEM_LIBGIT2=1"
         "USE_SYSTEM_OPENSPECFUN=1")))
     (inputs
-     `(("llvm" ,llvm)
+     `(("llvm" ,llvm-3.9.1)
        ("arpack-ng" ,arpack-ng)
        ("coreutils" ,coreutils) ;for bindings to "mkdir" and the like
        ("lapack" ,lapack)

--=-=-=--




Information forwarded to bug-guix@HIDDEN:
bug#30282; Package guix. Full text available.

Message received at 30282 <at> debbugs.gnu.org:


Received: (at 30282) by debbugs.gnu.org; 13 Mar 2018 12:02:37 +0000
From debbugs-submit-bounces <at> debbugs.gnu.org Tue Mar 13 08:02:37 2018
Received: from localhost ([127.0.0.1]:58161 helo=debbugs.gnu.org)
	by debbugs.gnu.org with esmtp (Exim 4.84_2)
	(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
	id 1evidY-0007Zu-K8
	for submit <at> debbugs.gnu.org; Tue, 13 Mar 2018 08:02:37 -0400
Received: from mail.thebird.nl ([95.154.246.10]:38969)
 by debbugs.gnu.org with esmtp (Exim 4.84_2)
 (envelope-from <pjotr2017@HIDDEN>) id 1evidW-0007Zf-I8
 for 30282 <at> debbugs.gnu.org; Tue, 13 Mar 2018 08:02:35 -0400
Received: by mail.thebird.nl (Postfix, from userid 502)
 id 552931248D7; Tue, 13 Mar 2018 12:58:20 +0100 (CET)
Date: Tue, 13 Mar 2018 12:58:20 +0100
From: Pjotr Prins <pjotr.public12@HIDDEN>
To: Pjotr Prins <pjotr.public12@HIDDEN>
Subject: Re: bug#30282: package julia build error
Message-ID: <20180313115820.GA13258@HIDDEN>
References: <20180128234305.03c958b0@HIDDEN>
 <87607a5ckn.fsf@HIDDEN> <87po49mis5.fsf@HIDDEN>
 <20180313095726.GA12663@HIDDEN>
MIME-Version: 1.0
Content-Type: text/plain; charset=us-ascii
Content-Disposition: inline
In-Reply-To: <20180313095726.GA12663@HIDDEN>
User-Agent: Mutt/1.5.21 (2010-09-15)
X-Spam-Score: -0.0 (/)
X-Debbugs-Envelope-To: 30282
Cc: Ludovic =?iso-8859-1?Q?Court=E8s?= <ludo@HIDDEN>, 30282 <at> debbugs.gnu.org,
 Marco van Hulten <marco@HIDDEN>
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: -0.0 (/)

One immediate problem is that Julia comes with patches for LLVM 3.9
only:

  https://github.com/JuliaLang/julia#llvm

it downloads, patches and compiles a specific LLVM. We actually need
this even though the failing tests are possibly not related (I suspect
the math libraries are not showing the same results as the built-in
ones).

I think we need to follow the recommended build steps for Julia first.
Then the tests should pass. Next perhaps link out components and send
bug reports upstream.

Pj.




Information forwarded to bug-guix@HIDDEN:
bug#30282; Package guix. Full text available.

Message received at 30282 <at> debbugs.gnu.org:


Received: (at 30282) by debbugs.gnu.org; 13 Mar 2018 10:01:43 +0000
From debbugs-submit-bounces <at> debbugs.gnu.org Tue Mar 13 06:01:43 2018
Received: from localhost ([127.0.0.1]:58091 helo=debbugs.gnu.org)
	by debbugs.gnu.org with esmtp (Exim 4.84_2)
	(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
	id 1evgkZ-0002Si-HW
	for submit <at> debbugs.gnu.org; Tue, 13 Mar 2018 06:01:43 -0400
Received: from mail.thebird.nl ([95.154.246.10]:38923)
 by debbugs.gnu.org with esmtp (Exim 4.84_2)
 (envelope-from <pjotr2017@HIDDEN>) id 1evgkX-0002SQ-Ci
 for 30282 <at> debbugs.gnu.org; Tue, 13 Mar 2018 06:01:41 -0400
Received: by mail.thebird.nl (Postfix, from userid 502)
 id 24F991248D7; Tue, 13 Mar 2018 10:57:27 +0100 (CET)
Date: Tue, 13 Mar 2018 10:57:26 +0100
From: Pjotr Prins <pjotr.public12@HIDDEN>
To: Ludovic =?iso-8859-1?Q?Court=E8s?= <ludo@HIDDEN>
Subject: Re: bug#30282: package julia build error
Message-ID: <20180313095726.GA12663@HIDDEN>
References: <20180128234305.03c958b0@HIDDEN>
 <87607a5ckn.fsf@HIDDEN> <87po49mis5.fsf@HIDDEN>
MIME-Version: 1.0
Content-Type: text/plain; charset=us-ascii
Content-Disposition: inline
In-Reply-To: <87po49mis5.fsf@HIDDEN>
User-Agent: Mutt/1.5.21 (2010-09-15)
X-Spam-Score: -0.0 (/)
X-Debbugs-Envelope-To: 30282
Cc: 30282 <at> debbugs.gnu.org, Marco van Hulten <marco@HIDDEN>
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: -0.0 (/)

> Help welcome!

I'll take a look.

Pj.
-- 




Information forwarded to bug-guix@HIDDEN:
bug#30282; Package guix. Full text available.

Message received at 30282 <at> debbugs.gnu.org:


Received: (at 30282) by debbugs.gnu.org; 12 Mar 2018 15:10:39 +0000
From debbugs-submit-bounces <at> debbugs.gnu.org Mon Mar 12 11:10:39 2018
Received: from localhost ([127.0.0.1]:57094 helo=debbugs.gnu.org)
	by debbugs.gnu.org with esmtp (Exim 4.84_2)
	(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
	id 1evP5y-0002cb-Kq
	for submit <at> debbugs.gnu.org; Mon, 12 Mar 2018 11:10:39 -0400
Received: from hera.aquilenet.fr ([185.233.100.1]:52100)
 by debbugs.gnu.org with esmtp (Exim 4.84_2)
 (envelope-from <ludo@HIDDEN>) id 1evP5x-0002cU-Ci
 for 30282 <at> debbugs.gnu.org; Mon, 12 Mar 2018 11:10:37 -0400
Received: from localhost (localhost [127.0.0.1])
 by hera.aquilenet.fr (Postfix) with ESMTP id B066E123F3;
 Mon, 12 Mar 2018 16:10:36 +0100 (CET)
X-Virus-Scanned: Debian amavisd-new at aquilenet.fr
Received: from hera.aquilenet.fr ([127.0.0.1])
 by localhost (hera.aquilenet.fr [127.0.0.1]) (amavisd-new, port 10024)
 with ESMTP id UL4tm8QA_JQs; Mon, 12 Mar 2018 16:10:35 +0100 (CET)
Received: from ribbon (vpn-0-27.aquilenet.fr [IPv6:2a0c:e300:4:27::])
 by hera.aquilenet.fr (Postfix) with ESMTPSA id 72131123D7;
 Mon, 12 Mar 2018 16:10:35 +0100 (CET)
From: ludo@HIDDEN (Ludovic =?utf-8?Q?Court=C3=A8s?=)
To: Marco van Hulten <marco@HIDDEN>
Subject: Re: bug#30282: package julia build error
References: <20180128234305.03c958b0@HIDDEN>
 <87607a5ckn.fsf@HIDDEN>
Date: Mon, 12 Mar 2018 16:10:34 +0100
In-Reply-To: <87607a5ckn.fsf@HIDDEN> ("Ludovic
 \=\?utf-8\?Q\?Court\=C3\=A8s\=22'\?\=
 \=\?utf-8\?Q\?s\?\= message of "Tue, 06 Feb 2018 17:04:40 +0100")
Message-ID: <87po49mis5.fsf@HIDDEN>
User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/25.3 (gnu/linux)
MIME-Version: 1.0
Content-Type: text/plain; charset=utf-8
Content-Transfer-Encoding: quoted-printable
X-Spam-Score: 1.0 (+)
X-Debbugs-Envelope-To: 30282
Cc: 30282 <at> debbugs.gnu.org
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: 1.0 (+)

Hello,

ludo@HIDDEN (Ludovic Court=C3=A8s) skribis:

> Error in testset linalg/arnoldi:
> Test Failed
>   Expression: sort((eigs(A, B, nev=3Dk, sigma=3D1.0))[1]) =E2=89=88 sort(=
(eigvals(A, B))[1:k])
>    Evaluated: [0.022743, 0.165356, 2.892] =E2=89=88 [0.022743, 2.892, 1.0=
574e15]
> ERROR: LoadError: Test run finished with errors
> while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/runtests=
.jl, in expression starting on line 29
> make[1]: *** [Makefile:18: all] Error 1

Commit c0edb5b5430a5278a3ebc9aeea9d3c8ae9a2e1f1 fixes this one.

Now for other test failures:

--8<---------------cut here---------------start------------->8---
Error in testset distributed:
Error During Test
  Got an exception of type LoadError outside of a @test
  LoadError: Distributed test failed, cmd : `/tmp/guix-build-julia-0.6.0.dr=
v-0/julia-0.6.0/usr/bin/julia --check-bounds=3Dyes --startup-file=3Dno --de=
pwarn=3Derror distributed_exec.jl`
  while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/distribu=
ted.jl, in expression starting on line 9
ERROR: LoadError: Test run finished with errors
while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/runtests.j=
l, in expression starting on line 29
make[1]: *** [Makefile:18: all] Error 1
--8<---------------cut here---------------end--------------->8---

Help welcome!

Ludo=E2=80=99.




Information forwarded to bug-guix@HIDDEN:
bug#30282; Package guix. Full text available.
Changed bug title to 'Julia 0.6.0 fails tests' from 'package julia build error' Request was from ludo@HIDDEN (Ludovic Courtès) to control <at> debbugs.gnu.org. Full text available.

Message received at 30282 <at> debbugs.gnu.org:


Received: (at 30282) by debbugs.gnu.org; 7 Feb 2018 11:56:28 +0000
From debbugs-submit-bounces <at> debbugs.gnu.org Wed Feb 07 06:56:28 2018
Received: from localhost ([127.0.0.1]:60919 helo=debbugs.gnu.org)
	by debbugs.gnu.org with esmtp (Exim 4.84_2)
	(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
	id 1ejOKy-0003UK-1p
	for submit <at> debbugs.gnu.org; Wed, 07 Feb 2018 06:56:28 -0500
Received: from hera.aquilenet.fr ([185.233.100.1]:35096)
 by debbugs.gnu.org with esmtp (Exim 4.84_2)
 (envelope-from <andreas@HIDDEN>) id 1ejOKw-0003UB-Bi
 for 30282 <at> debbugs.gnu.org; Wed, 07 Feb 2018 06:56:26 -0500
Received: from localhost (localhost [127.0.0.1])
 by hera.aquilenet.fr (Postfix) with ESMTP id 39B2EA05;
 Wed,  7 Feb 2018 12:56:25 +0100 (CET)
X-Virus-Scanned: Debian amavisd-new at aquilenet.fr
Received: from hera.aquilenet.fr ([127.0.0.1])
 by localhost (hera.aquilenet.fr [127.0.0.1]) (amavisd-new, port 10024)
 with ESMTP id Wg24_XWMhqf4; Wed,  7 Feb 2018 12:56:24 +0100 (CET)
Received: from jurong (unknown [IPv6:2001:910:103f::c1e])
 by hera.aquilenet.fr (Postfix) with ESMTPSA id 5C2ED72D;
 Wed,  7 Feb 2018 12:56:24 +0100 (CET)
Date: Wed, 7 Feb 2018 12:56:22 +0100
From: Andreas Enge <andreas@HIDDEN>
To: Ludovic =?iso-8859-15?Q?Court=E8s?= <ludo@HIDDEN>
Subject: Re: bug#30282: package julia build error
Message-ID: <20180207115622.GA14275@jurong>
References: <20180128234305.03c958b0@HIDDEN>
 <87607a5ckn.fsf@HIDDEN>
MIME-Version: 1.0
Content-Type: text/plain; charset=utf-8
Content-Disposition: inline
Content-Transfer-Encoding: 8bit
In-Reply-To: <87607a5ckn.fsf@HIDDEN>
User-Agent: Mutt/1.9.3 (2018-01-21)
X-Spam-Score: -0.0 (/)
X-Debbugs-Envelope-To: 30282
Cc: 30282 <at> debbugs.gnu.org, Marco van Hulten <marco@HIDDEN>
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: -0.0 (/)

Hello,

just for reference, I locally updated julia to 0.6.2, and the tests still fail,
but not in the same way:

Error in testset linalg/arnoldi:
Test Failed
  Expression: sort((eigs(A, B, nev=k, sigma=1.0))[1]) ≈ sort((eigvals(A, B))[1:k])
   Evaluated: [0.022743, 0.165356, 2.892] ≈ [0.022743, 2.892, 1.0574e15]
Error in testset misc:
Error During Test
  Got an exception of type LoadError outside of a @test
  LoadError: Deprecation test failed, cmd : `/tmp/guix-build-julia-0.6.2.drv-0/julia-0.6.2/usr/bin/julia --check-bounds=yes --startup-file=no deprecation_exec.jl`
  while loading /tmp/guix-build-julia-0.6.2.drv-0/julia-0.6.2/test/misc.jl, in expression starting on line 717
ERROR: LoadError: Test run finished with errors
while loading /tmp/guix-build-julia-0.6.2.drv-0/julia-0.6.2/test/runtests.jl, in expression starting on line 29

Andreas





Information forwarded to bug-guix@HIDDEN:
bug#30282; Package guix. Full text available.

Message received at 30282 <at> debbugs.gnu.org:


Received: (at 30282) by debbugs.gnu.org; 6 Feb 2018 16:04:44 +0000
From debbugs-submit-bounces <at> debbugs.gnu.org Tue Feb 06 11:04:44 2018
Received: from localhost ([127.0.0.1]:60469 helo=debbugs.gnu.org)
	by debbugs.gnu.org with esmtp (Exim 4.84_2)
	(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
	id 1ej5jg-0003UI-9a
	for submit <at> debbugs.gnu.org; Tue, 06 Feb 2018 11:04:44 -0500
Received: from hera.aquilenet.fr ([185.233.100.1]:58172)
 by debbugs.gnu.org with esmtp (Exim 4.84_2)
 (envelope-from <ludo@HIDDEN>) id 1ej5je-0003UA-62
 for 30282 <at> debbugs.gnu.org; Tue, 06 Feb 2018 11:04:42 -0500
Received: from localhost (localhost [127.0.0.1])
 by hera.aquilenet.fr (Postfix) with ESMTP id A8D6510867;
 Tue,  6 Feb 2018 17:04:41 +0100 (CET)
X-Virus-Scanned: Debian amavisd-new at aquilenet.fr
Received: from hera.aquilenet.fr ([127.0.0.1])
 by localhost (hera.aquilenet.fr [127.0.0.1]) (amavisd-new, port 10024)
 with ESMTP id lp0rG98iH441; Tue,  6 Feb 2018 17:04:40 +0100 (CET)
Received: from ribbon (unknown [193.50.110.200])
 by hera.aquilenet.fr (Postfix) with ESMTPSA id 8052E1068E;
 Tue,  6 Feb 2018 17:04:40 +0100 (CET)
From: ludo@HIDDEN (Ludovic =?utf-8?Q?Court=C3=A8s?=)
To: Marco van Hulten <marco@HIDDEN>
Subject: Re: bug#30282: package julia build error
References: <20180128234305.03c958b0@HIDDEN>
Date: Tue, 06 Feb 2018 17:04:40 +0100
In-Reply-To: <20180128234305.03c958b0@HIDDEN> (Marco van Hulten's
 message of "Sun, 28 Jan 2018 23:43:05 +0100")
Message-ID: <87607a5ckn.fsf@HIDDEN>
User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/25.3 (gnu/linux)
MIME-Version: 1.0
Content-Type: text/plain; charset=utf-8
Content-Transfer-Encoding: quoted-printable
X-Spam-Score: 1.0 (+)
X-Debbugs-Envelope-To: 30282
Cc: 30282 <at> debbugs.gnu.org
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: 1.0 (+)

Hi,

Marco van Hulten <marco@HIDDEN> skribis:

> $ guix package -i julia
> [...]

[...]

> EOFError()CapturedExceptionEOFError(()CapturedException(EOFError()Capture=
dException(EOFError(EOFError()), EOFError(), , Any[Any[(Any[(((::Base.Distr=
ibuted.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(33) - Unknown remote, closing connection.
> (::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})(::Base.Distribute=
d.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(29) - Unknown remote, closing connection.
> () at event.jl:73, 1)])
> Process(31) - Unknown remote, closing connection.
> EOFError()CapturedException(EOFError()EOFError()CapturedException(EOFErro=
rCapturedException((), EOFErrorEOFError(()), , Any[AnyAny[[(EOFError()Captu=
redException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSoc=
ket,Bool})() at event.jl:73, 1)])
> Process(31) - Unknown remote, closing connection.
> EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100=
{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(33) - Unknown remote, closing connection.
> (((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:7=
3, (::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})1)])
> Process(34) - Unknown remote, closing connection.
> (::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73,=
 1)])
> Process(30) - Unknown remote, closing connection.
> () at event.jl:73, 1)])
> Process(32) - Unknown remote, closing connection.
> EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100=
{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(32) - Unknown remote, closing connection.
> EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100=
{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(34) - Unknown remote, closing connection.
> EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100=
{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(33) - Unknown remote, closing connection.
> EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100=
{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(34) - Unknown remote, closing connection.
> distributed (3)           |  190.79  |  0.00  |  0.0 |  1.01      | 1708.=
66
> examples (2)              |   31.02  |  1.51  |  4.9 | 617.02     | 1654.=
81
> ERROR: LoadError: rmprocs: pids [3] not terminated after 30 seconds.
> Stacktrace:
>  [1] _rmprocs(::Array{Int64,1}, ::Int64) at ./distributed/cluster.jl:807
>  [2] #rmprocs#70(::Int64, ::Function, ::Array{Int64,1}, ::Vararg{Array{In=
t64,1},N} where N) at ./distributed/cluster.jl:775
>  [3] (::##40#46)() at /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/=
runtests.jl:93
>  [4] cd(::##40#46, ::String) at ./file.jl:70
> while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/runtests=
.jl, in expression starting on line 29
> make[1]: *** [Makefile:18: all] Error 1

The test failures I have with current master are different:

--8<---------------cut here---------------start------------->8---
Error in testset distributed:
Error During Test
  Got an exception of type LoadError outside of a @test
  LoadError: Distributed test failed, cmd : `/tmp/guix-build-julia-0.6.0.dr=
v-0/julia-0.6.0/usr/bin/julia --check-bounds=3Dyes --startup-file=3Dno --de=
pwarn=3Derror distributed_exec.jl`
  while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/distribu=
ted.jl, in expression starting on line 9
Error in testset libgit2:
Test Failed
  Expression: startswith(sprint(show, e), "GitError(Code:ENOTFOUND, Class:O=
S, Failed to resolve path")
Error in testset libgit2:
Test Failed
  Expression: err.msg =3D=3D "Invalid Content-Type: text/plain"
   Evaluated: "invalid Content-Type: text/plain" =3D=3D "Invalid Content-Ty=
pe: text/plain"
ERROR: LoadError: Test run finished with errors
while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/runtests.j=
l, in expression starting on line 29
make[1]: *** [Makefile:18: all] Error 1
make: *** [Makefile:558: test] Error 2
phase `check' failed after 1300.8 seconds
--8<---------------cut here---------------end--------------->8---

I fixed the libgit2 errors and got rid of the ldconfig warnings we had:

  9805ad6f8 * gnu: julia: Don't invoke /sbin/ldconfig.
  d40b5684c * gnu: julia: Adjust libgit2 tests.

However I now get another test failure:

--8<---------------cut here---------------start------------->8---
Error in testset linalg/arnoldi:
Test Failed
  Expression: sort((eigs(A, B, nev=3Dk, sigma=3D1.0))[1]) =E2=89=88 sort((e=
igvals(A, B))[1:k])
   Evaluated: [0.022743, 0.165356, 2.892] =E2=89=88 [0.022743, 2.892, 1.057=
4e15]
ERROR: LoadError: Test run finished with errors
while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/runtests.j=
l, in expression starting on line 29
make[1]: *** [Makefile:18: all] Error 1
--8<---------------cut here---------------end--------------->8---

Thoughts?  :-)

Ludo=E2=80=99.




Information forwarded to bug-guix@HIDDEN:
bug#30282; Package guix. Full text available.

Message received at submit <at> debbugs.gnu.org:


Received: (at submit) by debbugs.gnu.org; 28 Jan 2018 23:43:24 +0000
From debbugs-submit-bounces <at> debbugs.gnu.org Sun Jan 28 18:43:24 2018
Received: from localhost ([127.0.0.1]:46946 helo=debbugs.gnu.org)
	by debbugs.gnu.org with esmtp (Exim 4.84_2)
	(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
	id 1efwba-0005Co-HL
	for submit <at> debbugs.gnu.org; Sun, 28 Jan 2018 18:43:24 -0500
Received: from eggs.gnu.org ([208.118.235.92]:39553)
 by debbugs.gnu.org with esmtp (Exim 4.84_2)
 (envelope-from <marco@HIDDEN>) id 1efwbY-0005Ca-Pd
 for submit <at> debbugs.gnu.org; Sun, 28 Jan 2018 18:43:21 -0500
Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71)
 (envelope-from <marco@HIDDEN>) id 1efwbS-0006oM-AK
 for submit <at> debbugs.gnu.org; Sun, 28 Jan 2018 18:43:15 -0500
X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org
X-Spam-Level: ***
X-Spam-Status: No, score=3.3 required=5.0 tests=BAYES_50,
 RECEIVED_FROM_WINDOWS_HOST autolearn=disabled version=3.3.2
Received: from lists.gnu.org ([2001:4830:134:3::11]:35658)
 by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
 (Exim 4.71) (envelope-from <marco@HIDDEN>) id 1efwbS-0006oG-6j
 for submit <at> debbugs.gnu.org; Sun, 28 Jan 2018 18:43:14 -0500
Received: from eggs.gnu.org ([2001:4830:134:3::10]:58749)
 by lists.gnu.org with esmtp (Exim 4.71)
 (envelope-from <marco@HIDDEN>) id 1efwbQ-0007I4-LB
 for bug-guix@HIDDEN; Sun, 28 Jan 2018 18:43:13 -0500
Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71)
 (envelope-from <marco@HIDDEN>) id 1efwbN-0006lV-E5
 for bug-guix@HIDDEN; Sun, 28 Jan 2018 18:43:12 -0500
Received: from eterpe-smout.broadpark.no ([80.202.8.16]:43481)
 by eggs.gnu.org with esmtp (Exim 4.71)
 (envelope-from <marco@HIDDEN>) id 1efwbN-0006hr-2t
 for bug-guix@HIDDEN; Sun, 28 Jan 2018 18:43:09 -0500
MIME-version: 1.0
Content-type: text/plain; charset=UTF-8
Received: from bgo1cloudm2.nextgentel.net ([80.202.8.59])
 by eterpe-smout.broadpark.no
 (Oracle Communications Messaging Server 7u4-27.01(7.0.4.27.0) 64bit (built Aug
 30 2012)) with ESMTP id <0P3A00H1UF3UMW40@HIDDEN> for
 bug-guix@HIDDEN; Sun, 28 Jan 2018 23:43:06 +0100 (CET)
Received: from jasniac.instanton ([89.10.168.15])
 by cmsmtp with SMTP	id fvfGerOZUxBCwfvfGeHlo2; Sun, 28 Jan 2018 23:43:06 +0100
X-Original-Source-IP: 89.10.168.15
Date: Sun, 28 Jan 2018 23:43:05 +0100
From: Marco van Hulten <marco@HIDDEN>
To: bug-guix@HIDDEN
Subject: package julia build error
Message-id: <20180128234305.03c958b0@HIDDEN>
X-Mailer: Claws Mail 3.14.1 (GTK+ 2.24.25; x86_64-pc-linux-gnu)
Content-transfer-encoding: quoted-printable
X-CMAE-Envelope: MS4wfHDzGfBQhoC69f3W0LXlHI3pYZl8ziY87flKUHgK5ElTO6xbQIYhDI3o9dpwEluBmbTV9qwpEqAWkpku65rhqLGqWevRazDBb/YwuNMzWWUu9TX0xvzT
 nxbAo53wgfBLyWdXyVwWs6SgaSZji5rEqOYnDNWfMwyc7f1GXUNWcclc
X-detected-operating-system: by eggs.gnu.org: Windows NT kernel [generic]
 [fuzzy]
X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.6.x
X-Received-From: 2001:4830:134:3::11
X-Spam-Score: -5.0 (-----)
X-Debbugs-Envelope-To: submit
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: -5.0 (-----)

Hi=E2=80=94

Building julia ends like badly:


$ guix package -i julia
[...]
base64 (2)                |    0.41  |  0.00  |  0.0 |  2.10      | 1559.96
serialize (2)             |    7.05  |  0.29  |  4.1 | 80.75      | 1559.96
WARNING: readuntil(IO,AbstractString) will perform poorly with a long string
WARNING: readuntil(IO,AbstractString) will perform poorly with a long string
WARNING: readuntil(IO,AbstractString) will perform poorly with a long string
Warning: threaded loop executed in order
threads (3)               |   12.18  |  1.90  | 15.6 | 93.54      | 1708.66
enums (3)                 |   12.64  |  0.41  |  3.2 | 147.02     | 1708.66
i18n (3)                  |    0.06  |  0.00  |  0.0 |  0.07      | 1708.66
workspace (3)             |    6.38  |  0.00  |  0.0 |  4.33      | 1708.66
sh: /sbin/ldconfig: No such file or directory
libdl (3)                 |    2.77  |  0.00  |  0.0 | 10.04      | 1708.66
int (3)                   |    9.51  |  0.19  |  2.0 | 29.06      | 1708.66
misc (2)                  |   68.30  |  9.99  | 14.6 | 1734.26    | 1654.81
intset (2)                |    4.31  |  0.14  |  3.3 | 29.06      | 1654.81
checked (3)               |    9.04  |  0.14  |  1.6 | 51.62      | 1708.66
floatfuncs (2)            |   12.98  |  0.34  |  2.6 | 117.90     | 1654.81
inline (2)                |   10.71  |  0.13  |  1.2 | 40.40      | 1654.81
boundscheck (2)           |   24.83  |  0.00  |  0.0 |  8.59      | 1654.81
error (2)                 |    7.12  |  2.34  | 32.9 |  7.45      | 1654.81
cartesian (2)             |    0.07  |  0.00  |  0.0 |  0.05      | 1654.81
asmvariant (2)            |    0.29  |  0.00  |  0.0 |  0.54      | 1654.81
osutils (2)               |    0.10  |  0.00  |  0.0 |  0.25      | 1654.81
channels (2)              |   32.41  | 12.07  | 37.2 | 456.26     | 1654.81
iostream (2)              |    1.04  |  0.00  |  0.0 |  2.89      | 1654.81
WARNING: Method definition f(Tuple{Vararg{Int64, N}}, AbstractArray{T, N}) =
in module Test51Main_specificity at /tmp/guix-build-julia-0.6.0.drv-0/julia=
-0.6.0/test/specificity.jl:87 overwritten at /tmp/guix-build-julia-0.6.0.dr=
v-0/julia-0.6.0/test/specificity.jl:93.
specificity (2)           |    0.29  |  0.00  |  0.0 |  0.84      | 1654.81
fft (2)                   |   61.87  |  1.68  |  2.7 | 541.40     | 1654.81
dsp (2)                   |   19.35  |  0.99  |  5.1 | 245.84     | 1654.81
EOFError()CapturedExceptionEOFError(()CapturedException(EOFError()CapturedE=
xception(EOFError(EOFError()), EOFError(), , Any[Any[(Any[(((::Base.Distrib=
uted.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
Process(33) - Unknown remote, closing connection.
(::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})(::Base.Distributed.=
##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
Process(29) - Unknown remote, closing connection.
() at event.jl:73, 1)])
Process(31) - Unknown remote, closing connection.
EOFError()CapturedException(EOFError()EOFError()CapturedException(EOFErrorC=
apturedException((), EOFErrorEOFError(()), , Any[AnyAny[[(EOFError()Capture=
dException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocke=
t,Bool})() at event.jl:73, 1)])
Process(31) - Unknown remote, closing connection.
EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{T=
CPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
Process(33) - Unknown remote, closing connection.
(((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73,=
 (::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})1)])
Process(34) - Unknown remote, closing connection.
(::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1=
)])
Process(30) - Unknown remote, closing connection.
() at event.jl:73, 1)])
Process(32) - Unknown remote, closing connection.
EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{T=
CPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
Process(32) - Unknown remote, closing connection.
EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{T=
CPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
Process(34) - Unknown remote, closing connection.
EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{T=
CPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
Process(33) - Unknown remote, closing connection.
EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{T=
CPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
Process(34) - Unknown remote, closing connection.
distributed (3)           |  190.79  |  0.00  |  0.0 |  1.01      | 1708.66
examples (2)              |   31.02  |  1.51  |  4.9 | 617.02     | 1654.81
ERROR: LoadError: rmprocs: pids [3] not terminated after 30 seconds.
Stacktrace:
 [1] _rmprocs(::Array{Int64,1}, ::Int64) at ./distributed/cluster.jl:807
 [2] #rmprocs#70(::Int64, ::Function, ::Array{Int64,1}, ::Vararg{Array{Int6=
4,1},N} where N) at ./distributed/cluster.jl:775
 [3] (::##40#46)() at /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/ru=
ntests.jl:93
 [4] cd(::##40#46, ::String) at ./file.jl:70
while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/runtests.j=
l, in expression starting on line 29
make[1]: *** [Makefile:18: all] Error 1
make: *** [Makefile:558: test] Error 2
phase `check' failed after 2266.9 seconds
builder for `/gnu/store/zkx3jjnqg043yd3k2kl3lgw57rx39vmy-julia-0.6.0.drv' f=
ailed with exit code 1
guix package: error: build failed: build of
`/gnu/store/zkx3jjnqg043yd3k2kl3lgw57rx39vmy-julia-0.6.0.drv' failed


One issue seems that /sbin/ldconfig does not exist; this is provided
differently in GuixSD compared to most GNU distros.  The critical
problem appears to be at event.jl:73.

=E2=80=94Marco




Acknowledgement sent to Marco van Hulten <marco@HIDDEN>:
New bug report received and forwarded. Copy sent to bug-guix@HIDDEN. Full text available.
Report forwarded to bug-guix@HIDDEN:
bug#30282; Package guix. Full text available.
Please note: This is a static page, with minimal formatting, updated once a day.
Click here to see this page with the latest information and nicer formatting.
Last modified: Mon, 25 Nov 2019 12:00:02 UTC

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997 nCipher Corporation Ltd, 1994-97 Ian Jackson.