GNU bug report logs -
#32688
[PATCH] gnu: Add r-absim.
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bug#32688
; Package
guix-patches
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(Mon, 10 Sep 2018 18:48:03 GMT)
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pimi <madalinionel.patrascu <at> mdc-berlin.de>
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New bug report received and forwarded. Copy sent to
guix-patches <at> gnu.org
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(Mon, 10 Sep 2018 18:48:03 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
gnu/packages/cran.scm (r-absim): New variable.
---
gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 814439172..fd4929c0f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5564,3 +5564,31 @@ gf_density(), and so on, bring the formula interface to ggplot(). This captures
and extends the excellent simplicity of the lattice-graphics formula interface,
while providing the intuitive capabilities of @code{r-ggplot2}.")
(license license:expat)))
+
+(define-public r-absim
+ (package
+ (name "r-absim")
+ (version "0.2.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "AbSim" version))
+ (sha256
+ (base32 "16ddjk8b6xw80ch4jis1y751i9561wdxh0gifbf15qiz3vjckq8m"))))
+ (properties `((upstream-name . "AbSim")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ape" ,r-ape)
+ ("r-powerlaw" ,r-powerlaw)))
+ (home-page "https://cran.r-project.org/web/packages/AbSim/")
+ (synopsis "Time resolved simulations of antibody repertoires")
+ (description
+ "This package provides simulation methods for the evolution of antibody repertoires.
+ The heavy and light chain variable region of both human and C57BL/6 mice can
+be simulated in a time-dependent fashion. Both single lineages using one set of
+V-, D-, and J-genes or full repertoires can be simulated. The algorithm begins
+with an initial V-D-J recombination event, starting the first phylogenetic tree.
+ Upon completion, the main loop of the algorithm begins, with each iteration
+representing one simulated time step. Various mutation events are possible at
+each time step, contributing to a diverse final repertoire.")
+ (license license:gpl2)))
--
2.17.1
Owner recorded as Ricardo Wurmus <rekado <at> elephly.net>.
Request was from
Ricardo Wurmus <rekado <at> elephly.net>
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control <at> debbugs.gnu.org
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(Thu, 13 Sep 2018 17:02:02 GMT)
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Leo Famulari <leo <at> famulari.name>
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You have taken responsibility.
(Tue, 02 Oct 2018 20:19:02 GMT)
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pimi <madalinionel.patrascu <at> mdc-berlin.de>
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bug acknowledged by developer.
(Tue, 02 Oct 2018 20:19:02 GMT)
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Message #12 received at 32688-done <at> debbugs.gnu.org (full text, mbox):
[Message part 1 (text/plain, inline)]
On Mon, Sep 10, 2018 at 08:30:57PM +0200, pimi wrote:
> gnu/packages/cran.scm (r-absim): New variable.
Thanks! Pushed as 1ddb2b5c1ca1e18924cbb969c974a0e8d8e54010
[signature.asc (application/pgp-signature, inline)]
bug archived.
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Debbugs Internal Request <help-debbugs <at> gnu.org>
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internal_control <at> debbugs.gnu.org
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(Wed, 31 Oct 2018 11:24:07 GMT)
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This bug report was last modified 5 years and 172 days ago.
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