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#32697
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bug#32697
; Package
guix-patches
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(Tue, 11 Sep 2018 09:18:02 GMT)
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"MadalinIonel.Patrascu <at> mdc-berlin.de" <MadalinIonel.Patrascu <at> mdc-berlin.de>
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(Tue, 11 Sep 2018 09:18:02 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
Mădălin Ionel Patrașcu
System Administrator
Bioinformatics Platform
The Berlin Institute for Medical Systems Biology (BIMSB)
Max Delbrück Center (MDC)
Robert-Rössle-Straße 10
House 87, room 1.10
13125 Berlin, Germany
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bug#32697
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(Tue, 11 Sep 2018 12:30:02 GMT)
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Message #8 received at 32697 <at> debbugs.gnu.org (full text, mbox):
gnu/packages/cran.scm (r-mhsmm): New variable.
---
gnu/packages/cran.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 35badf334..e9ea46e4a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5686,3 +5686,26 @@ biological data by Michael Whitlock and Dolph Schluter.")
series.")
;; Any version of the GPL
(license (list license:gpl2+ license:gpl3+))))
+
+(define-public r-mhsmm
+ (package
+ (name "r-mhsmm")
+ (version "0.4.16")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "mhsmm" version))
+ (sha256
+ (base32 "009dj0zkj1zry7jr9hf4cknb686z50a2l967if64xm0dvjmp7dgs"))))
+ (build-system r-build-system)
+ (propagated-inputs `(("r-mvtnorm" ,r-mvtnorm)))
+ (home-page "https://github.com/jaredo/mhsmm/")
+ (synopsis "Inference for hidden Markov and semi-Markov models")
+ (description
+ "The @code{r-mhsmm} package implements estimation and prediction methods for
+hidden Markov and semi-Markov models for multiple observation sequences. Such
+techniques are of interest when observed data is thought to be dependent on some
+unobserved (or hidden) state. Also, this package is suitable for equidistant
+time series data, with multivariate and/or missing data. Allows user defined
+emission distributions.")
+ (license license:gpl2+)))
--
2.17.1
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bug#32697
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Message #11 received at 32697 <at> debbugs.gnu.org (full text, mbox):
gnu/packages/cran.scm (r-nleqslv): New variable.
---
gnu/packages/cran.scm | 22 ++++++++++++++++++++++
1 file changed, 22 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index e9ea46e4a..f5b259d53 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5709,3 +5709,25 @@ unobserved (or hidden) state. Also, this package is suitable for equidistant
time series data, with multivariate and/or missing data. Allows user defined
emission distributions.")
(license license:gpl2+)))
+
+(define-public r-nleqslv
+ (package
+ (name "r-nleqslv")
+ (version "3.3.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "nleqslv" version))
+ (sha256
+ (base32 "1v9znvncyigw9r25wx2ma0b7ib179b488dl0qsrhp5zrcz7mcjgm"))))
+ (build-system r-build-system)
+ (native-inputs `(("gfortran" ,gfortran)))
+ (home-page "https://cran.r-project.org/web/packages/nleqslv/")
+ (synopsis "Solve systems of nonlinear equations")
+ (description
+ "The @code{r-nleqslv} package solves a system of nonlinear equations using a
+Broyden or a Newton method with a choice of global strategies such as line
+search and trust region. There are options for using a numerical or user
+supplied Jacobian, for specifying a banded numerical Jacobian and for allowing a
+singular or ill-conditioned Jacobian.")
+ (license license:gpl2+)))
--
2.17.1
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bug#32697
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(Tue, 11 Sep 2018 12:30:03 GMT)
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Message #14 received at 32697 <at> debbugs.gnu.org (full text, mbox):
gnu/packages/cran.scm (r-physicalactivity): New variable.
---
gnu/packages/cran.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f5b259d53..df320c229 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5731,3 +5731,36 @@ search and trust region. There are options for using a numerical or user
supplied Jacobian, for specifying a banded numerical Jacobian and for allowing a
singular or ill-conditioned Jacobian.")
(license license:gpl2+)))
+
+(define-public r-physicalactivity
+ (package
+ (name "r-physicalactivity")
+ (version "0.2-2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "PhysicalActivity" version))
+ (sha256
+ (base32 "14z6plgwyr46vs9m997rvlz8sdglfs9g087an8668zqkzzs2w4ln"))))
+ (properties
+ `((upstream-name . "PhysicalActivity")))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/PhysicalActivity/")
+ (synopsis "Procesing accelerometer data for physical activity measurement")
+ (description
+ "This @code{r-physicalactivity} package provides a function @code{wearingMarking}
+for classification of monitor wear and nonwear time intervals in accelerometer
+data collected to assess physical activity. The package also contains functions
+for making plots of accelerometer data and obtaining the summary of various
+information including daily monitor wear time and the mean monitor wear time
+during valid days. The revised package version 0.2-1 improved the functions
+regarding speed, robustness and add better support for time zones and daylight
+saving. In addition, several functions were added:
+@enumerate
+@item the @code{markDelivery} can classify days for ActiGraph delivery by mail;
+@item the @code{markPAI} can categorize physical activity intensity level based
+on user-defined cut-points of accelerometer counts.
+@end enumerate
+ It also supports importing ActiGraph (AGD) files with @code{readActigraph} and
+@code{queryActigraph} functions.")
+ (license license:gpl3+)))
--
2.17.1
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bug#32697
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(Tue, 11 Sep 2018 12:30:03 GMT)
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Message #17 received at 32697 <at> debbugs.gnu.org (full text, mbox):
gnu/packages/cran.scm (r-acc): New variable.
---
gnu/packages/cran.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index df320c229..7621b3bb6 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5764,3 +5764,36 @@ on user-defined cut-points of accelerometer counts.
It also supports importing ActiGraph (AGD) files with @code{readActigraph} and
@code{queryActigraph} functions.")
(license license:gpl3+)))
+
+(define-public r-acc
+ (package
+ (name "r-acc")
+ (version "1.3.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "acc" version))
+ (sha256
+ (base32 "1ii2vm47djxbixa75h690q1s2f9m9x6i8nkygik93j6dayr6kr1m"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-circlize" ,r-circlize)
+ ("r-dbi" ,r-dbi)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-iterators" ,r-iterators)
+ ("r-mhsmm" ,r-mhsmm)
+ ("r-nleqslv" ,r-nleqslv)
+ ("r-physicalactivity" ,r-physicalactivity)
+ ("r-plyr" ,r-plyr)
+ ("r-r-utils" ,r-r-utils)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcpparmadillo" ,r-rcpparmadillo)
+ ("r-rsqlite" ,r-rsqlite)
+ ("r-zoo" ,r-zoo)))
+ (home-page "https://cran.r-project.org/web/packages/acc/")
+ (synopsis "Exploring accelerometer data")
+ (description
+ "This package processes accelerometer data from uni-axial and tri-axial devices
+and generates data summaries. Also, includes functions to plot, analyze, and
+simulate accelerometer data.")
+ (license license:gpl2+)))
--
2.17.1
Owner recorded as Ricardo Wurmus <rekado <at> elephly.net>.
Request was from
Ricardo Wurmus <rekado <at> elephly.net>
to
control <at> debbugs.gnu.org
.
(Thu, 13 Sep 2018 17:02:06 GMT)
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Reply sent
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Leo Famulari <leo <at> famulari.name>
:
You have taken responsibility.
(Mon, 01 Oct 2018 13:10:01 GMT)
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Notification sent
to
"MadalinIonel.Patrascu <at> mdc-berlin.de" <MadalinIonel.Patrascu <at> mdc-berlin.de>
:
bug acknowledged by developer.
(Mon, 01 Oct 2018 13:10:03 GMT)
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Message #24 received at 32697-done <at> debbugs.gnu.org (full text, mbox):
[Message part 1 (text/plain, inline)]
On Tue, Sep 11, 2018 at 02:28:44PM +0200, pimi wrote:
> gnu/packages/cran.scm (r-mhsmm): New variable.
Thanks! I pushed this patch series as
f95d45425152bda85950d2b8f9ead50bdce2e2cc
[signature.asc (application/pgp-signature, inline)]
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
to
internal_control <at> debbugs.gnu.org
.
(Tue, 30 Oct 2018 11:24:05 GMT)
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This bug report was last modified 5 years and 173 days ago.
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