GNU bug report logs - #33545
[PATCH 0/2] Enable use of hypre via petsc

Previous Next

Package: guix-patches;

Reported by: Paul Garlick <pgarlick <at> tourbillion-technology.com>

Date: Wed, 28 Nov 2018 19:44:02 UTC

Severity: normal

Tags: patch

Done: ludovic.courtes <at> inria.fr (Ludovic Courtès)

Bug is archived. No further changes may be made.

To add a comment to this bug, you must first unarchive it, by sending
a message to control AT debbugs.gnu.org, with unarchive 33545 in the body.
You can then email your comments to 33545 AT debbugs.gnu.org in the normal way.

Toggle the display of automated, internal messages from the tracker.

View this report as an mbox folder, status mbox, maintainer mbox


Report forwarded to guix-patches <at> gnu.org:
bug#33545; Package guix-patches. (Wed, 28 Nov 2018 19:44:02 GMT) Full text and rfc822 format available.

Acknowledgement sent to Paul Garlick <pgarlick <at> tourbillion-technology.com>:
New bug report received and forwarded. Copy sent to guix-patches <at> gnu.org. (Wed, 28 Nov 2018 19:44:03 GMT) Full text and rfc822 format available.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Paul Garlick <pgarlick <at> tourbillion-technology.com>
To: guix-patches <at> gnu.org
Cc: Paul Garlick <pgarlick <at> tourbillion-technology.com>
Subject: [PATCH 0/2] Enable use of hypre via petsc
Date: Wed, 28 Nov 2018 19:42:30 +0000
Hi Guix,

These two patches enable the HYPRE preconditioners to be used by packages
that use PETSc, such as FEniCS.

The first patch adds the necessary configure flag for petsc-openmpi.  The
second patch is needed to ensure that the check phase of the fenics build
continues to succeed.

Best regards,

Paul.

Paul Garlick (2):
  gnu: petsc-openmpi: Configure with support for HYPRE preconditioner.
  gnu: fenics: Skip extra demo in 'check' phase.

 gnu/packages/maths.scm      | 4 +++-
 gnu/packages/simulation.scm | 1 +
 2 files changed, 4 insertions(+), 1 deletion(-)

-- 
1.8.3.1





Information forwarded to guix-patches <at> gnu.org:
bug#33545; Package guix-patches. (Wed, 28 Nov 2018 19:49:02 GMT) Full text and rfc822 format available.

Message #8 received at 33545 <at> debbugs.gnu.org (full text, mbox):

From: Paul Garlick <pgarlick <at> tourbillion-technology.com>
To: 33545 <at> debbugs.gnu.org
Cc: Paul Garlick <pgarlick <at> tourbillion-technology.com>
Subject: [PATCH 1/2] gnu: petsc-openmpi: Configure with support for HYPRE
 preconditioner.
Date: Wed, 28 Nov 2018 19:48:19 +0000
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add hypre-openmpi.
[arguments]: Add 'with-hypre=1' flag.
---
 gnu/packages/maths.scm | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 0cf8916..85af458 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -1767,6 +1767,7 @@ scientific applications modeled by partial differential equations.")
     (name "petsc-openmpi")
     (inputs
      `(("hdf5" ,hdf5-parallel-openmpi)
+       ("hypre" ,hypre-openmpi)
        ("metis" ,metis)
        ("mumps" ,mumps-openmpi)
        ("openmpi" ,openmpi)
@@ -1776,7 +1777,8 @@ scientific applications modeled by partial differential equations.")
     (arguments
      (substitute-keyword-arguments (package-arguments petsc)
        ((#:configure-flags cf)
-        ``("--with-mpiexec=mpirun"
+        ``("--with-hypre=1"
+           "--with-mpiexec=mpirun"
            "--with-metis=1"
            "--with-mumps=1"
            "--with-scalapack=1"
-- 
1.8.3.1





Information forwarded to guix-patches <at> gnu.org:
bug#33545; Package guix-patches. (Wed, 28 Nov 2018 19:50:02 GMT) Full text and rfc822 format available.

Message #11 received at 33545 <at> debbugs.gnu.org (full text, mbox):

From: Paul Garlick <pgarlick <at> tourbillion-technology.com>
To: 33545 <at> debbugs.gnu.org
Cc: Paul Garlick <pgarlick <at> tourbillion-technology.com>
Subject: [PATCH 2/2] gnu: fenics: Skip extra demo in 'check' phase.
Date: Wed, 28 Nov 2018 19:48:20 +0000
* gnu/packages/simulation.scm (fenics)[arguments]: Add 'curl-curl'
demo to list of demos that require meshes supplied by git-lfs.
---
 gnu/packages/simulation.scm | 1 +
 1 file changed, 1 insertion(+)

diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 6144e23..bbe6d53 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -639,6 +639,7 @@ user interface to the FEniCS core components and external libraries.")
                  "'lift-drag', \n"
                  "'elastodynamics', \n"
                  "'dg-advection-diffusion', \n"
+                 "'curl-curl', \n"
                  "'contact-vi-tao', \n"
                  "'contact-vi-snes', \n"
                  "'collision-detection', \n"
-- 
1.8.3.1





Reply sent to ludovic.courtes <at> inria.fr (Ludovic Courtès):
You have taken responsibility. (Tue, 04 Dec 2018 10:15:02 GMT) Full text and rfc822 format available.

Notification sent to Paul Garlick <pgarlick <at> tourbillion-technology.com>:
bug acknowledged by developer. (Tue, 04 Dec 2018 10:15:02 GMT) Full text and rfc822 format available.

Message #16 received at 33545-done <at> debbugs.gnu.org (full text, mbox):

From: ludovic.courtes <at> inria.fr (Ludovic Courtès)
To: Paul Garlick <pgarlick <at> tourbillion-technology.com>
Cc: 33545-done <at> debbugs.gnu.org
Subject: Re: [bug#33545] [PATCH 0/2] Enable use of hypre via petsc
Date: Tue, 04 Dec 2018 11:13:54 +0100
Hello,

Paul Garlick <pgarlick <at> tourbillion-technology.com> skribis:

> Paul Garlick (2):
>   gnu: petsc-openmpi: Configure with support for HYPRE preconditioner.
>   gnu: fenics: Skip extra demo in 'check' phase.

Applied both patches, thank you!

Ludo’.




bug archived. Request was from Debbugs Internal Request <help-debbugs <at> gnu.org> to internal_control <at> debbugs.gnu.org. (Tue, 01 Jan 2019 12:24:05 GMT) Full text and rfc822 format available.

This bug report was last modified 5 years and 88 days ago.

Previous Next


GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.