GNU bug report logs - #34697
[PATCH] gnu: add r-lintr.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Nicolò Balzarotti <anothersms <at> gmail.com>
To: guix-patches <at> gnu.org
Subject: [PATCH] gnu: add r-lintr.
Date: Fri,  1 Mar 2019 09:07:53 +0100

---
 gnu/packages/cran.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f3bd3ded8d..a9b775f67e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -10726,3 +10726,34 @@ using @code{S3}.")
     (description
      "This package provides a friendly interface for the construction of regular expressions.")
     (license license:expat)))
+
+(define-public r-lintr
+  (package
+    (name "r-lintr")
+    (version "1.0.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "lintr" version))
+       (sha256
+        (base32
+         "0vlsgq13g2ddv3wqcxaaf7yki9yjj3j1agkh91vqlvbi90i6s8mx"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-codetools" ,r-codetools)
+       ("r-crayon" ,r-crayon)
+       ("r-digest" ,r-digest)
+       ("r-httr" ,r-httr)
+       ("r-igraph" ,r-igraph)
+       ("r-jsonlite" ,r-jsonlite)
+       ("r-knitr" ,r-knitr)
+       ("r-rex" ,r-rex)
+       ("r-rstudioapi" ,r-rstudioapi)
+       ("r-stringdist" ,r-stringdist)
+       ("r-testthat" ,r-testthat)))
+    (home-page "https://github.com/jimhester/lintr")
+    (synopsis "A 'Linter' for R Code")
+    (description
+     "Checks adherence to a given style, syntax errors and possible semantic issues.  Supports on the fly checking of R code edited with 'RStudio IDE', 'Emacs', 'Vim', 'Sublime Text' and 'Atom'.")
+    (license license:expat)))
+
-- 
2.20.1

Message #8 received at 34697 <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Nicolò Balzarotti <anothersms <at> gmail.com>
Cc: 34697 <at> debbugs.gnu.org
Subject: Re: [bug#34697] [PATCH] gnu: add r-lintr.
Date: Thu, 07 Mar 2019 20:47:15 +0100

Hi Nicolò,

thank you for this patch.

Unfortunately, there are a couple of problems with the synopsis and the
description.  “./pre-inst-env guix lint r-lintr” will tell you about
some of the issues.  For R packages in particular please make sure that
single straight quotes as in “'RStudio'” are removed.

Please also review the Contributing section in the Guix manual for
information on what should appear in the commit message.

Could you please send an updated patch as a reply to this message?

Thanks!

--
Ricardo

Message #11 received at 34697 <at> debbugs.gnu.org (full text, mbox):

From: Nicolò Balzarotti <anothersms <at> gmail.com>
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: 34697 <at> debbugs.gnu.org
Subject: [PATCH 1/3] gnu: Add r-xmlparsedata.
Date: Wed, 11 Dec 2019 09:19:47 +0100

* gnu/packages/cran.scm (r-xmlparsedata): New variable.
---
 gnu/packages/cran.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 11d254001f..0a878dc340 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -14695,6 +14695,29 @@ they are often difficult to interpret.  Rex allows you to build complex
 regular expressions from human readable expressions")
     (license license:expat)))
 
+(define-public r-xmlparsedata
+  (package
+    (name "r-xmlparsedata")
+    (version "1.0.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "xmlparsedata" version))
+       (sha256
+        (base32
+         "0gjr3l5z5dp276lchr2649as1rkj56d2mlvbr66yg393zzw50lsh"))))
+    (properties `((upstream-name . "xmlparsedata")))
+    (build-system r-build-system)
+    (home-page
+     "https://github.com/r-lib/xmlparsedata#readme")
+    (synopsis
+     "Parse Data of @code{R} Code as an @code{XML} Tree")
+    (description
+     "Convert the output of @code{utils::getParseData()} to an @code{XML}
+tree, that one can search via @code{XPath}, and easier to manipulate in
+general.")
+    (license license:expat)))
+
 (define-public r-sctransform
   (package
     (name "r-sctransform")
-- 
2.24.0

Message #14 received at 34697 <at> debbugs.gnu.org (full text, mbox):

From: Nicolò Balzarotti <anothersms <at> gmail.com>
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: 34697 <at> debbugs.gnu.org
Subject: [PATCH 2/3] gnu: Add r-cyclocomp.
Date: Wed, 11 Dec 2019 09:19:47 +0100

* gnu/packages/cran.scm (r-cyclocomp): New variable.
---
 gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 0a878dc340..9ff1dd3104 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -14718,6 +14718,35 @@ tree, that one can search via @code{XPath}, and easier to manipulate in
 general.")
     (license license:expat)))
 
+(define-public r-cyclocomp
+  (package
+    (name "r-cyclocomp")
+    (version "1.1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "cyclocomp" version))
+       (sha256
+        (base32
+         "0gky3svk02wiajw7nfjh30684h3qxili4bvsab0m7b6cggw6bgyd"))))
+    (properties `((upstream-name . "cyclocomp")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-callr" ,r-callr)
+       ("r-crayon" ,r-crayon)
+       ("r-desc" ,r-desc)
+       ("r-remotes" ,r-remotes)
+       ("r-withr" ,r-withr)))
+    (home-page
+     "https://github.com/MangoTheCat/cyclocomp")
+    (synopsis "Cyclomatic Complexity of R Code")
+    (description
+     "Cyclomatic complexity is a software metric (measurement), used to
+indicate the complexity of a program.  It is a quantitative measure of the
+number of linearly independent paths through a program's source code.  It was
+developed by @cite{Thomas J. McCabe, Sr. in 1976}.")
+    (license license:expat)))
+
 (define-public r-sctransform
   (package
     (name "r-sctransform")
-- 
2.24.0

Message #17 received at 34697 <at> debbugs.gnu.org (full text, mbox):

From: Nicolò Balzarotti <anothersms <at> gmail.com>
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: 34697 <at> debbugs.gnu.org
Subject: [PATCH 3/3] gnu: Add r-lintr.
Date: Wed, 11 Dec 2019 09:19:47 +0100

* gnu/packages/cran.scm (r-lintr): New variable.
---
 gnu/packages/cran.scm | 34 ++++++++++++++++++++++++++++++++++
 1 file changed, 34 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 9ff1dd3104..07432c2785 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -14747,6 +14747,40 @@ number of linearly independent paths through a program's source code.  It was
 developed by @cite{Thomas J. McCabe, Sr. in 1976}.")
     (license license:expat)))
 
+(define-public r-lintr
+  (package
+    (name "r-lintr")
+    (version "2.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "lintr" version))
+       (sha256
+        (base32
+         "09gbci4v5n4gsfzminly8332fw7faxdi1kkyvpa10dydx02sjcwb"))))
+    (properties `((upstream-name . "lintr")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-codetools" ,r-codetools)
+       ("r-crayon" ,r-crayon)
+       ("r-cyclocomp" ,r-cyclocomp)
+       ("r-digest" ,r-digest)
+       ("r-httr" ,r-httr)
+       ("r-jsonlite" ,r-jsonlite)
+       ("r-knitr" ,r-knitr)
+       ("r-rex" ,r-rex)
+       ("r-rstudioapi" ,r-rstudioapi)
+       ("r-stringdist" ,r-stringdist)
+       ("r-testthat" ,r-testthat)
+       ("r-xml2" ,r-xml2)
+       ("r-xmlparsedata" ,r-xmlparsedata)))
+    (home-page "https://github.com/jimhester/lintr")
+    (synopsis "Linter for R Code")
+    (description "Checks adherence to a given style, syntax errors and
+possible semantic issues.  Supports on the fly checking of R code edited with
+@code{RStudio IDE}, @code{Emacs} and @code{Vim}.")
+    (license license:expat)))
+
 (define-public r-sctransform
   (package
     (name "r-sctransform")
-- 
2.24.0

Message #22 received at 34697-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Nicolò Balzarotti <anothersms <at> gmail.com>
Cc: 34697-done <at> debbugs.gnu.org
Subject: Re: [PATCH 3/3] gnu: Add r-lintr.
Date: Wed, 11 Dec 2019 12:12:02 +0100

Nicolò Balzarotti <anothersms <at> gmail.com> writes:

> * gnu/packages/cran.scm (r-lintr): New variable.

I pushed these three patches with minor changes.

Thanks!

-- 
Ricardo

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