GNU bug report logs - #35890
[PATCH 3/4] gnu: python-hdf4: Update to 0.9.2.

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Package: guix-patches; Reported by: Brett Gilio <brettg@HIDDEN>; Keywords: patch; dated Sat, 25 May 2019 00:25:02 UTC; Maintainer for guix-patches is guix-patches@HIDDEN.

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From: =?utf-8?Q?Ludovic_Court=C3=A8s?= <ludo@HIDDEN>
To: Brett Gilio <brettg@HIDDEN>,
Subject: Re: [bug#35890] [PATCH 4/4] gnu: python-hdf4: Remove check-phase
 argument.
References: <8736l3qtjx.fsf@HIDDEN> <87zhnbpee0.fsf@HIDDEN>
 <871s0ld3hn.fsf@HIDDEN>
Date: Tue, 02 Jul 2019 17:22:18 +0200
In-Reply-To: <871s0ld3hn.fsf@HIDDEN> (Marius Bakke's message of "Sun, 26 May
 2019 10:28:04 +0200")
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Hello Brett,

Marius Bakke <mbakke@HIDDEN> skribis:

> Brett Gilio <brettg@HIDDEN> writes:
>
>> From 74c956284d5ff7b20e12ed4315404697320dc809 Mon Sep 17 00:00:00 2001
>> From: Brett Gilio <brettg@HIDDEN>
>> Date: Fri, 24 May 2019 19:11:00 -0500
>> Subject: [PATCH 4/4] gnu: python-hdf4: Remove check-phase argument.
>>
>> * gnu/packages/python-xyz.scm (python-hdf4): Update to .
>> ---
>>  gnu/packages/python-xyz.scm | 15 ---------------
>>  1 file changed, 15 deletions(-)
>>
>> diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
>> index 54cc0c2b27..43287d212e 100644
>> --- a/gnu/packages/python-xyz.scm
>> +++ b/gnu/packages/python-xyz.scm
>> @@ -385,21 +385,6 @@ and verifies that it matches the intended target ho=
stname.")
>>      `(("hdf4" ,hdf4)
>>        ("libjpeg" ,libjpeg)
>>        ("zlib" ,zlib)))
>> -   (arguments
>> -    `(#:phases
>> -      (modify-phases %standard-phases
>> -        (replace 'check
>> -          (lambda _
>> -            ;; The 'runexamples' script sets PYTHONPATH to CWD, then go=
es
>> -            ;; on to import numpy. Somehow this works on their CI syste=
m.
>> -            ;; Let's just manage PYTHONPATH here instead.
>> -            (substitute* "runexamples.sh"
>> -              (("export PYTHONPATH=3D.*") ""))
>> -            (setenv "PYTHONPATH"
>> -                    (string-append (getcwd) ":"
>> -                                   (getenv "PYTHONPATH")))
>> -            (invoke "./runexamples.sh")
>> -            (invoke "nosetests" "-v"))))))
>>     (home-page "https://github.com/fhs/python-hdf4")
>>     (synopsis "Python interface to the NCSA HDF4 library")
>>     (description
>
> While this makes the build succeed, the 'check' phase is now moot.  It
> appears to simply build the library for a second time, and then prints
> 'Ran 0 tests in N seconds...'.
>
> Can you look into what happened to the tests between version 0.9.0 and
> 0.9.2?

Any update on this?

Ludo=E2=80=99.
Information forwarded to guix-patches@HIDDEN:
bug#35890; Package guix-patches. Full text available.

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From: Ricardo Wurmus <rekado@HIDDEN>
To: Brett Gilio <brettg@HIDDEN>
Subject: Re: [bug#35890] [PATCH 4/4] gnu: python-hdf4: Remove check-phase
 argument.
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Brett Gilio <brettg@HIDDEN> writes:

> From 74c956284d5ff7b20e12ed4315404697320dc809 Mon Sep 17 00:00:00 2001
> From: Brett Gilio <brettg@HIDDEN>
> Date: Fri, 24 May 2019 19:11:00 -0500
> Subject: [PATCH 4/4] gnu: python-hdf4: Remove check-phase argument.
>
> * gnu/packages/python-xyz.scm (python-hdf4): Update to .

I guess you=E2=80=99re using the yasnippets for Emacs :)

It=E2=80=99s fine to do this in the same commit as the upgrade, but as Mari=
us
wrote the tests should actually be run.

--=20
Ricardo
Information forwarded to guix-patches@HIDDEN:
bug#35890; Package guix-patches. Full text available.

Message received at 35890 <at> debbugs.gnu.org:


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From: Marius Bakke <mbakke@HIDDEN>
To: Brett Gilio <brettg@HIDDEN>, 35890 <at> debbugs.gnu.org
Subject: Re: [bug#35890] [PATCH 4/4] gnu: python-hdf4: Remove check-phase
 argument.
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--=-=-=
Content-Type: text/plain

Brett Gilio <brettg@HIDDEN> writes:

> From 74c956284d5ff7b20e12ed4315404697320dc809 Mon Sep 17 00:00:00 2001
> From: Brett Gilio <brettg@HIDDEN>
> Date: Fri, 24 May 2019 19:11:00 -0500
> Subject: [PATCH 4/4] gnu: python-hdf4: Remove check-phase argument.
>
> * gnu/packages/python-xyz.scm (python-hdf4): Update to .
> ---
>  gnu/packages/python-xyz.scm | 15 ---------------
>  1 file changed, 15 deletions(-)
>
> diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
> index 54cc0c2b27..43287d212e 100644
> --- a/gnu/packages/python-xyz.scm
> +++ b/gnu/packages/python-xyz.scm
> @@ -385,21 +385,6 @@ and verifies that it matches the intended target hostname.")
>      `(("hdf4" ,hdf4)
>        ("libjpeg" ,libjpeg)
>        ("zlib" ,zlib)))
> -   (arguments
> -    `(#:phases
> -      (modify-phases %standard-phases
> -        (replace 'check
> -          (lambda _
> -            ;; The 'runexamples' script sets PYTHONPATH to CWD, then goes
> -            ;; on to import numpy. Somehow this works on their CI system.
> -            ;; Let's just manage PYTHONPATH here instead.
> -            (substitute* "runexamples.sh"
> -              (("export PYTHONPATH=.*") ""))
> -            (setenv "PYTHONPATH"
> -                    (string-append (getcwd) ":"
> -                                   (getenv "PYTHONPATH")))
> -            (invoke "./runexamples.sh")
> -            (invoke "nosetests" "-v"))))))
>     (home-page "https://github.com/fhs/python-hdf4")
>     (synopsis "Python interface to the NCSA HDF4 library")
>     (description

While this makes the build succeed, the 'check' phase is now moot.  It
appears to simply build the library for a second time, and then prints
'Ran 0 tests in N seconds...'.

Can you look into what happened to the tests between version 0.9.0 and
0.9.2?

--=-=-=
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--=-=-=--
Information forwarded to guix-patches@HIDDEN:
bug#35890; Package guix-patches. Full text available.

Message received at 35890 <at> debbugs.gnu.org:


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From: Brett Gilio <brettg@HIDDEN>
To: 35890 <at> debbugs.gnu.org
Subject: [PATCH 4/4] gnu: python-hdf4: Remove check-phase argument.
Date: Fri, 24 May 2019 19:27:19 -0500
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Content-Description: [PATCH 4/4] gnu: python-hdf4: Remove check-phase argument.
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From 74c956284d5ff7b20e12ed4315404697320dc809 Mon Sep 17 00:00:00 2001
From: Brett Gilio <brettg@HIDDEN>
Date: Fri, 24 May 2019 19:11:00 -0500
Subject: [PATCH 4/4] gnu: python-hdf4: Remove check-phase argument.

* gnu/packages/python-xyz.scm (python-hdf4): Update to .
---
 gnu/packages/python-xyz.scm | 15 ---------------
 1 file changed, 15 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 54cc0c2b27..43287d212e 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -385,21 +385,6 @@ and verifies that it matches the intended target hostname.")
     `(("hdf4" ,hdf4)
       ("libjpeg" ,libjpeg)
       ("zlib" ,zlib)))
-   (arguments
-    `(#:phases
-      (modify-phases %standard-phases
-        (replace 'check
-          (lambda _
-            ;; The 'runexamples' script sets PYTHONPATH to CWD, then goes
-            ;; on to import numpy. Somehow this works on their CI system.
-            ;; Let's just manage PYTHONPATH here instead.
-            (substitute* "runexamples.sh"
-              (("export PYTHONPATH=.*") ""))
-            (setenv "PYTHONPATH"
-                    (string-append (getcwd) ":"
-                                   (getenv "PYTHONPATH")))
-            (invoke "./runexamples.sh")
-            (invoke "nosetests" "-v"))))))
    (home-page "https://github.com/fhs/python-hdf4")
    (synopsis "Python interface to the NCSA HDF4 library")
    (description
-- 
2.21.0
Information forwarded to guix-patches@HIDDEN:
bug#35890; Package guix-patches. Full text available.

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From: Brett Gilio <brettg@HIDDEN>
To: guix-patches@HIDDEN
Subject: [PATCH 3/4] gnu: python-hdf4: Update to 0.9.2.
Date: Fri, 24 May 2019 19:14:26 -0500
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From fb102715cd2b809e4d963b8f71df54bbad06c369 Mon Sep 17 00:00:00 2001
From: Brett Gilio <brettg@HIDDEN>
Date: Fri, 24 May 2019 19:10:33 -0500
Subject: [PATCH 3/4] gnu: python-hdf4: Update to 0.9.2.

* gnu/packages/python-xyz.scm (python-hdf4): Update to 0.9.2.
---
 gnu/packages/python-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index a58b788ca1..54cc0c2b27 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -370,14 +370,14 @@ and verifies that it matches the intended target hostname.")
 (define-public python-hdf4
   (package
    (name "python-hdf4")
-   (version "0.9")
+   (version "0.9.2")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri name version))
       (sha256
        (base32
-        "1hjiyrxvxk9817qyqky3nar4y3fs4z8wxz0n884zzb5wi6skrjks"))))
+        "00sxppysk3w620g1jdskjzkybvpf8dkpzjfj3wlw5khpzw1g0hq5"))))
    (build-system python-build-system)
    (native-inputs `(("nose" ,python-nose)))
    (propagated-inputs `(("numpy" ,python-numpy)))
-- 
2.21.0
Acknowledgement sent to Brett Gilio <brettg@HIDDEN>:
New bug report received and forwarded. Copy sent to guix-patches@HIDDEN. Full text available.
Report forwarded to guix-patches@HIDDEN:
bug#35890; Package guix-patches. Full text available.
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