GNU bug report logs - #36795
[PATCH 06/11] gnu: Add r-consensusclusterplus.

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Package: guix-patches;

Reported by: zimoun <zimon.toutoune <at> gmail.com>

Date: Wed, 24 Jul 2019 18:23:06 UTC

Severity: normal

Tags: patch

Merged with 36789, 36790, 36791, 36792, 36793, 36794, 36796, 36797, 36798, 36799, 36800

Done: zimoun <zimon.toutoune <at> gmail.com>

Bug is archived. No further changes may be made.

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Report forwarded to guix-patches <at> gnu.org:
bug#36795; Package guix-patches. (Wed, 24 Jul 2019 18:23:06 GMT) Full text and rfc822 format available.

Acknowledgement sent to zimoun <zimon.toutoune <at> gmail.com>:
New bug report received and forwarded. Copy sent to guix-patches <at> gnu.org. (Wed, 24 Jul 2019 18:23:06 GMT) Full text and rfc822 format available.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: zimoun <zimon.toutoune <at> gmail.com>
To: guix-patches <at> gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [PATCH 06/11] gnu: Add r-consensusclusterplus.
Date: Wed, 24 Jul 2019 20:21:59 +0200
* gnu/packages/bioconductor.scm (r-consensusclusterplus): New variable.
---
 gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d79ff729fc..d5bd512972 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4827,6 +4827,31 @@ and to both short and long sequence reads.")
       "Provides utilities for flow cytometry data.")
     (license license:artistic2.0)))
 
+(define-public r-consensusclusterplus
+  (package
+    (name "r-consensusclusterplus")
+    (version "1.48.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (bioconductor-uri "ConsensusClusterPlus" version))
+        (sha256
+          (base32
+            "1mlcm3wq5n8s0gxs35j0ph9576fhbrbrrsj2xy84fy20prcfs4w8"))))
+    (properties
+      `((upstream-name . "ConsensusClusterPlus")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-all" ,r-all)
+        ("r-biobase" ,r-biobase)
+        ("r-cluster" ,r-cluster)))
+    (home-page
+      "https://bioconductor.org/packages/ConsensusClusterPlus")
+    (synopsis "Clustering algorithm")
+    (description
+      "Algorithm for determining cluster count and membership by stability evidence in unsupervised analysis.")
+    (license license:gpl2)))
+
 (define-public r-flowcore
   (package
     (name "r-flowcore")
-- 
2.21.0





Merged 36789 36790 36791 36792 36793 36794 36795 36800. Request was from Tobias Geerinckx-Rice <me <at> tobias.gr> to control <at> debbugs.gnu.org. (Wed, 24 Jul 2019 18:37:03 GMT) Full text and rfc822 format available.

Merged 36789 36790 36791 36792 36793 36794 36795 36796 36800. Request was from Tobias Geerinckx-Rice <me <at> tobias.gr> to control <at> debbugs.gnu.org. (Wed, 24 Jul 2019 18:37:04 GMT) Full text and rfc822 format available.

Merged 36789 36790 36791 36792 36793 36794 36795 36796 36797 36800. Request was from Tobias Geerinckx-Rice <me <at> tobias.gr> to control <at> debbugs.gnu.org. (Wed, 24 Jul 2019 18:37:04 GMT) Full text and rfc822 format available.

Merged 36789 36790 36791 36792 36793 36794 36795 36796 36797 36798 36800. Request was from Tobias Geerinckx-Rice <me <at> tobias.gr> to control <at> debbugs.gnu.org. (Wed, 24 Jul 2019 18:37:05 GMT) Full text and rfc822 format available.

Merged 36789 36790 36791 36792 36793 36794 36795 36796 36797 36798 36799 36800. Request was from Tobias Geerinckx-Rice <me <at> tobias.gr> to control <at> debbugs.gnu.org. (Wed, 24 Jul 2019 18:37:05 GMT) Full text and rfc822 format available.

Merged 36789 36790 36791 36792 36793 36794 36795 36796 36797 36798 36799 36800. Request was from zimoun <zimon.toutoune <at> gmail.com> to control <at> debbugs.gnu.org. (Wed, 24 Jul 2019 19:18:03 GMT) Full text and rfc822 format available.

bug archived. Request was from Debbugs Internal Request <help-debbugs <at> gnu.org> to internal_control <at> debbugs.gnu.org. (Sat, 21 Mar 2020 11:24:03 GMT) Full text and rfc822 format available.

This bug report was last modified 4 years and 8 days ago.

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