GNU bug report logs -
#36797
[PATCH 08/11] gnu: Add r-flowpeaks.
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Reported by: zimoun <zimon.toutoune <at> gmail.com>
Date: Wed, 24 Jul 2019 18:23:08 UTC
Severity: normal
Tags: patch
Merged with 36789,
36790,
36791,
36792,
36793,
36794,
36795,
36796,
36798,
36799,
36800
Done: zimoun <zimon.toutoune <at> gmail.com>
Bug is archived. No further changes may be made.
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:
bug#36797
; Package
guix-patches
.
(Wed, 24 Jul 2019 18:23:08 GMT)
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:
New bug report received and forwarded. Copy sent to
guix-patches <at> gnu.org
.
(Wed, 24 Jul 2019 18:23:08 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/bioconductor.scm (r-flowpeaks): New variable.
---
gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0f023665c2..ab4d9f4075 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4907,3 +4907,26 @@ and to both short and long sequence reads.")
(description
"Identifies cell populations in Flow Cytometry data using non-parametric clustering and segmented-regression-based change point detection. Note: R 2.11.0 or newer is required.")
(license license:artistic2.0)))
+
+(define-public r-flowpeaks
+ (package
+ (name "r-flowpeaks")
+ (version "1.30.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "flowPeaks" version))
+ (sha256
+ (base32
+ "1ncz7n6n39svi444yy29ip53398392s3m6z0h2a77rhcnzg456wy"))))
+ (properties `((upstream-name . "flowPeaks")))
+ (build-system r-build-system)
+ (inputs `(("gsl" ,gsl)))
+ (home-page
+ "https://bioconductor.org/packages/flowPeaks")
+ (synopsis
+ "An R package for flow data clustering")
+ (description
+ "This package provides a fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means.")
+ (license license:artistic2.0))) ;TODO: artistic1.0 does not exist
+
--
2.21.0
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guix-patches <at> gnu.org
:
bug#36797
; Package
guix-patches
.
(Wed, 24 Jul 2019 20:52:01 GMT)
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Message #16 received at 36797 <at> debbugs.gnu.org (full text, mbox):
zimoun <zimon.toutoune <at> gmail.com> writes:
> * gnu/packages/bioconductor.scm (r-flowpeaks): New variable.
[…]
> + (license license:artistic2.0))) ;TODO: artistic1.0 does not exist
Unfortunately, version 1.0 of the Artistic License is too unclear to be
considered a free license. I have excluded this package from the
set of patches that I’ll apply to the master branch.
--
Ricardo
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:
You have taken responsibility.
(Fri, 21 Feb 2020 17:08:01 GMT)
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bug acknowledged by developer.
(Fri, 21 Feb 2020 17:08:01 GMT)
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Message #21 received at 36797-done <at> debbugs.gnu.org (full text, mbox):
Dear,
All the patches are merged now; except r-flowpeaks. Because this
package use Artistic1.0 which is not enough clear to be considered
"free" [1,2] (GNU's point of view [3]) and upstream are not
responsive, let clean the bug tracker. :-)
[1] https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797#16
[2] https://lists.gnu.org/archive/html/guix-devel/2019-12/msg00286.html
[3] https://www.gnu.org/licenses/license-list.en.html#ArtisticLicense
All the best,
simon
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Request was from
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(Sat, 21 Mar 2020 11:24:03 GMT)
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This bug report was last modified 4 years and 34 days ago.
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