GNU bug report logs - #36805
Small patch to remove TODO for (@@ (guix build-system r) bioconductor-uri)

Please note: This is a static page, with minimal formatting, updated once a day.
Click here to see this page with the latest information and nicer formatting.

Package: guix-patches; Reported by: Kyle Andrews <kyle.c.andrews@HIDDEN>; dated Thu, 25 Jul 2019 03:45:03 UTC; Maintainer for guix-patches is guix-patches@HIDDEN.

Message received at 36805 <at> debbugs.gnu.org:


Received: (at 36805) by debbugs.gnu.org; 26 Jul 2019 10:01:52 +0000
From debbugs-submit-bounces <at> debbugs.gnu.org Fri Jul 26 06:01:52 2019
Received: from localhost ([127.0.0.1]:40889 helo=debbugs.gnu.org)
	by debbugs.gnu.org with esmtp (Exim 4.84_2)
	(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
	id 1hqx2u-0007Rt-Aa
	for submit <at> debbugs.gnu.org; Fri, 26 Jul 2019 06:01:52 -0400
Received: from sender4-of-o53.zoho.com ([136.143.188.53]:21370)
 by debbugs.gnu.org with esmtp (Exim 4.84_2)
 (envelope-from <rekado@HIDDEN>) id 1hqx2r-0007ON-S5
 for 36805 <at> debbugs.gnu.org; Fri, 26 Jul 2019 06:01:51 -0400
ARC-Seal: i=1; a=rsa-sha256; t=1564134396; cv=none; d=zoho.com; s=zohoarc; 
 b=JvccNqUw1VQXsq9oKUBaszvJzlmvX4T7FxBnFVpcd7n3QvASsmL0Vq8Fhd3a1fylgLOYCbuF5qGBy3EVnWw46+kihbe+FzYSMUHflzdYeo1eNcXGZrtb8NOtOEUA+AeAV47gRd8ATwBeF8IlOT3QA+78Xd6+P7uOj9AceNWHBwE=
ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zoho.com;
 s=zohoarc; t=1564134396;
 h=Content-Type:Content-Transfer-Encoding:Cc:Date:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:To:ARC-Authentication-Results;
 bh=/+Vert+yVA+25McH+VGA92OnNyCG1nBfgGpHeB107FU=; 
 b=e3t66qNd3kePLLXtZfJ7MzJQnZYtYDL8nsAjKXQANB/11Fj35r/EeJnefem4amk6loNxOyCefv20Z3pArucg2rwbbx9VLiQC90EtQXusn/z10K+4WnqRU9ikGThH7RvvjRnIYxFso8A6F22zpQsWcRQjms6dizmyJS9sJto8znc=
ARC-Authentication-Results: i=1; mx.zoho.com; dkim=pass  header.i=elephly.net;
 spf=pass  smtp.mailfrom=rekado@HIDDEN;
 dmarc=pass header.from=<rekado@HIDDEN> header.from=<rekado@HIDDEN>
DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1564134396; 
 s=zoho; d=elephly.net; i=rekado@HIDDEN;
 h=References:From:To:Cc:Subject:In-reply-to:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding;
 l=641; bh=/+Vert+yVA+25McH+VGA92OnNyCG1nBfgGpHeB107FU=;
 b=MBMEkZA7PIZdljUaKHhKFnnxeiGrNNAOMONu3TsAon0lAetawbs8tC4QNYYcFCRM
 e9nFBvRaoNOnYIeOf1shrCrP7MF5sS+VrXnCv1x4Hrecph6JXpnwENp1yoiedVblj9E
 +E4lU+GK958luRIs1bT0pAL4G44X7IqBAwrtb6j4=
Received: from localhost (141.80.247.250 [141.80.247.250]) by mx.zohomail.com
 with SMTPS id 1564134396247906.5576915385484;
 Fri, 26 Jul 2019 02:46:36 -0700 (PDT)
References: <92658660d50853e4eec92f536d8b3eb720aab911.camel@HIDDEN>
 <CAJ3okZ15JPdQETN1G4xS-OGyGV97_4t+Keg0eEfpCk18ir82-g@HIDDEN>
 <8a97ec5ed0d1f657731c22593a1f6696af2434dc.camel@HIDDEN>
User-agent: mu4e 1.2.0; emacs 26.2
From: Ricardo Wurmus <rekado@HIDDEN>
To: Kyle Andrews <kyle.c.andrews@HIDDEN>
Subject: Re: [bug#36805] Small patch to remove TODO for (@@ (guix build-system
 r) bioconductor-uri)
In-reply-to: <8a97ec5ed0d1f657731c22593a1f6696af2434dc.camel@HIDDEN>
X-URL: https://elephly.net
X-PGP-Key: https://elephly.net/rekado.pubkey
X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6  2150 197A 5888 235F ACAC
Date: Fri, 26 Jul 2019 11:46:33 +0200
Message-ID: <87pnlx86x2.fsf@HIDDEN>
MIME-Version: 1.0
Content-Type: text/plain; charset=utf-8
Content-Transfer-Encoding: quoted-printable
X-ZohoMailClient: External
X-Spam-Score: 0.0 (/)
X-Debbugs-Envelope-To: 36805
Cc: 36805 <at> debbugs.gnu.org, zimoun <zimon.toutoune@HIDDEN>
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: -1.0 (-)


Hi Kyle,

> I find it sometimes convenient to use a modified version of the
> file.path function in R to save me from myself a bit with file paths
> while also adding some semantic markup. Perhaps it would also be useful
> for building Guix packages? Users would then seldom have to worry about
> incorrectly including trailing slashes. I created a code snippet with
> my naive implementation here:
>
> https://gitlab.com/snippets/1879185
>
> Maybe there is already a guile library for this sort of thing?

There is, but it=E2=80=99s a little heavier:

    https://gitlab.com/brandoninvergo/guile-file-names

--=20
Ricardo





Information forwarded to guix-patches@HIDDEN:
bug#36805; Package guix-patches. Full text available.

Message received at 36805 <at> debbugs.gnu.org:


Received: (at 36805) by debbugs.gnu.org; 26 Jul 2019 04:49:15 +0000
From debbugs-submit-bounces <at> debbugs.gnu.org Fri Jul 26 00:49:15 2019
Received: from localhost ([127.0.0.1]:40691 helo=debbugs.gnu.org)
	by debbugs.gnu.org with esmtp (Exim 4.84_2)
	(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
	id 1hqsAM-0008Mn-4n
	for submit <at> debbugs.gnu.org; Fri, 26 Jul 2019 00:49:15 -0400
Received: from mail-io1-f65.google.com ([209.85.166.65]:38220)
 by debbugs.gnu.org with esmtp (Exim 4.84_2)
 (envelope-from <kyle.c.andrews@HIDDEN>) id 1hqrfM-0005TX-Uq
 for 36805 <at> debbugs.gnu.org; Fri, 26 Jul 2019 00:17:14 -0400
Received: by mail-io1-f65.google.com with SMTP id j6so26880654ioa.5
 for <36805 <at> debbugs.gnu.org>; Thu, 25 Jul 2019 21:17:12 -0700 (PDT)
DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025;
 h=message-id:subject:from:to:cc:date:in-reply-to:references
 :mime-version:content-transfer-encoding;
 bh=1oZ3fv+MJrM6Zu7H5lc3If60+8BxUMT+YQRqn+bdK08=;
 b=fXGeIqFcxVuVxf7MSmTmZKYsVO/U2rXJIqmHyEkUtgE4SryrJ/+Kj40nI/qVmpfXDG
 B9sGZ5vgyW7M8QJ5Th7JilI0rGspdjf8vvkKlNQaDIZC33XjBEABUyOnR7yedTVfjmiL
 hJuYhqkOIvxCHYvKt4envUXyCirGgEN8e06TPn6PNlqVAZpJzM6z/eZy1dJHe9hM8yFG
 K9L28H2dZN0UdwG97lRdJqv0VWIeWi5JfLhZ0VsrYsye7jmL1u32N/XEAMMPtLNqYafK
 OLaG6R1u87PsW1e97gOuNDagHVT1mz9QTLM2MhRhOG1tx9TtBoqPOLd1e3IchKYEjpzP
 twsA==
X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed;
 d=1e100.net; s=20161025;
 h=x-gm-message-state:message-id:subject:from:to:cc:date:in-reply-to
 :references:mime-version:content-transfer-encoding;
 bh=1oZ3fv+MJrM6Zu7H5lc3If60+8BxUMT+YQRqn+bdK08=;
 b=ueJDg0cHlV/KbCwVsqETxTtBcruaWS0nfzVVneBx2ihgWi/xshtbG8f7kUotGm7I0X
 7RuDzLuFxhAE75rxMa5+CQjLpQX84Cyb5ZkjDA6jo/f8+37/uuwh/8jkzWfLT6LEVn6g
 MzRVnFTCU2hzBEI550LXVgHKHlkV/m+d3qz1e+hMLskEliDcmBBvNVvLXzVDGOHNqOUQ
 X22GqCJZJzqJuX4gHgJtKdlwdn0tqkkZjRCOaT6Jw8zxypPaYDeo5v2gD9Mt6/SZsFgn
 2bjDA0/c6zrVkc1fzU8eKPMuOwa/9m1cnYlr/ZsMNnF8p1H2qgs6n2M6AZHJESxnVCJX
 UeFQ==
X-Gm-Message-State: APjAAAXYnB732pD0V6cwXMvk4ak/5+Goo1QllmBt/4tXpW5NCF2KAE4V
 9Adkgqy12wOPAMG8MkBA2EI=
X-Google-Smtp-Source: APXvYqzk/O2SKjWtjGBKV3s7FCYxMCsMboFudXOB288mQxydE9v0SvGIlK7MZJfOx2JKYQp88082fw==
X-Received: by 2002:a02:5a02:: with SMTP id v2mr92392989jaa.124.1564114627132; 
 Thu, 25 Jul 2019 21:17:07 -0700 (PDT)
Received: from [192.168.2.52] (96-35-65-255.dhcp.bycy.mi.charter.com.
 [96.35.65.255])
 by smtp.googlemail.com with ESMTPSA id b14sm55794195iod.33.2019.07.25.21.17.05
 (version=TLS1_3 cipher=AEAD-AES256-GCM-SHA384 bits=256/256);
 Thu, 25 Jul 2019 21:17:06 -0700 (PDT)
Message-ID: <8a97ec5ed0d1f657731c22593a1f6696af2434dc.camel@HIDDEN>
Subject: Re: [bug#36805] Small patch to remove TODO for (@@ (guix
 build-system r) bioconductor-uri)
From: Kyle Andrews <kyle.c.andrews@HIDDEN>
To: zimoun <zimon.toutoune@HIDDEN>
Date: Fri, 26 Jul 2019 00:17:05 -0400
In-Reply-To: <CAJ3okZ15JPdQETN1G4xS-OGyGV97_4t+Keg0eEfpCk18ir82-g@HIDDEN>
References: <92658660d50853e4eec92f536d8b3eb720aab911.camel@HIDDEN>
 <CAJ3okZ15JPdQETN1G4xS-OGyGV97_4t+Keg0eEfpCk18ir82-g@HIDDEN>
Content-Type: text/plain; charset="UTF-8"
X-Mailer: Evolution 3.28.1 
Mime-Version: 1.0
Content-Transfer-Encoding: 7bit
X-Spam-Score: 0.0 (/)
X-Debbugs-Envelope-To: 36805
X-Mailman-Approved-At: Fri, 26 Jul 2019 00:49:12 -0400
Cc: 36805 <at> debbugs.gnu.org
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: -1.0 (-)

On Thu, 2019-07-25 at 15:48 +0200, zimoun wrote:
> Dear,
> 
> It appears to me nice---if for example one wants to create a channel
> for Bioconductor 3.6 or older.
> This eases the automation of such channel.
> 
> I am using the package `cytofkit`, removed in the last release:
> https://bioconductor.org/about/removed-packages/
> 
> Append strings to build the uri is not really nice.
> https://github.com/zimoun/guix-bimsb/blob/master/bimsb/packages/stagi
> ng.scm#L2895-L2941
> 
> Thank you for this suggestion.
> 
> 
> All the best,
> simon

Hi Simon,

I find it sometimes convenient to use a modified version of the
file.path function in R to save me from myself a bit with file paths
while also adding some semantic markup. Perhaps it would also be useful
for building Guix packages? Users would then seldom have to worry about
incorrectly including trailing slashes. I created a code snippet with
my naive implementation here:

https://gitlab.com/snippets/1879185

Maybe there is already a guile library for this sort of thing?

Regards,

Kyle





Information forwarded to guix-patches@HIDDEN:
bug#36805; Package guix-patches. Full text available.

Message received at 36805 <at> debbugs.gnu.org:


Received: (at 36805) by debbugs.gnu.org; 25 Jul 2019 13:48:35 +0000
From debbugs-submit-bounces <at> debbugs.gnu.org Thu Jul 25 09:48:35 2019
Received: from localhost ([127.0.0.1]:38618 helo=debbugs.gnu.org)
	by debbugs.gnu.org with esmtp (Exim 4.84_2)
	(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
	id 1hqe6l-0004eE-0v
	for submit <at> debbugs.gnu.org; Thu, 25 Jul 2019 09:48:35 -0400
Received: from mail-qt1-f170.google.com ([209.85.160.170]:44912)
 by debbugs.gnu.org with esmtp (Exim 4.84_2)
 (envelope-from <zimon.toutoune@HIDDEN>) id 1hqe6i-0004e0-MA
 for 36805 <at> debbugs.gnu.org; Thu, 25 Jul 2019 09:48:33 -0400
Received: by mail-qt1-f170.google.com with SMTP id 44so18080794qtg.11
 for <36805 <at> debbugs.gnu.org>; Thu, 25 Jul 2019 06:48:32 -0700 (PDT)
DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025;
 h=mime-version:references:in-reply-to:from:date:message-id:subject:to
 :cc; bh=cqpIKKkxyU3ZpLIKwmf7gzAicbcGenSTJinkVQBdvuQ=;
 b=Q/zs9wR7kn0nqbSJCg3Jiu2xJqEi+zSn9LwS/OdiKwT9EsHS19psPzRtxVyNVMHb1W
 30Q1n2hsjOddoQXquoD2THw3TUuYdaDhyppqn7yHyQMSXZuVh3dHrTtZtMrN2ArjdY3r
 iBADeXineffwccAqWtyJDI6JsdCvzaUXVYYgd0YaQFFwrNXTO6FIAVuW228PNxcwz/aD
 ObbiKHUO+8rz/KvLfEMTTxbiReIEUs2wIVVped/EPQL6ckhku90Eo0XlhOMMfycbbGQt
 WnnqEdfyz6YoLm/0e0FjtXTDzBlVGtSZxRYd2XHCvmhmW8EJTj1anBwnqOOfC2UoXnIL
 ySNg==
X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed;
 d=1e100.net; s=20161025;
 h=x-gm-message-state:mime-version:references:in-reply-to:from:date
 :message-id:subject:to:cc;
 bh=cqpIKKkxyU3ZpLIKwmf7gzAicbcGenSTJinkVQBdvuQ=;
 b=htgr4b1Fep0m9lwnOHsALjtRZnUpzSyD/gI8To/+veQ8XK/HhcJThuFPN9+lDIfTix
 H/o2YJS4a8hJ5NZm4dbxzEdUIp1WfOLefAoUpwQVFTGxMJj4PNDZEaeYtVALO7x8e+eg
 z2+2LeSxYFZNVsnZfw7/dD5L0iL0AY6MKxNlz1TEgncqyEup3/p06jonM87dbtctSxnc
 Qm1SwE6HiWqSpBj5/m7B6D/zHimylCL9ks0MmwsdLX/fdO3myqaqDAUBSUOkuxL4kfyJ
 gk6GlDxPB1eky0z4SPDK5+BU42dDMCvDdJUyQKV7PrZE1LCSHCCDNnqEkQGpsoqXXuLu
 sLyw==
X-Gm-Message-State: APjAAAXHH+ol6vfFMzIG5sUaIomGw7FGYDCJqcufuWlh7b4/2mkTv+3h
 RBcSx1CLyOFQNkcD+NZYW8PVA8Fw+UHPvr0/BEU=
X-Google-Smtp-Source: APXvYqzQaqhh7gtpTIVJlbwRSM6igS5Gnp3A/uNnZzNEz4NkULLQjZVfMqs5jgGc5/mKmySIYWeyaKDQyrC+b3qyB94=
X-Received: by 2002:a0c:b010:: with SMTP id k16mr64407240qvc.170.1564062507173; 
 Thu, 25 Jul 2019 06:48:27 -0700 (PDT)
MIME-Version: 1.0
References: <92658660d50853e4eec92f536d8b3eb720aab911.camel@HIDDEN>
In-Reply-To: <92658660d50853e4eec92f536d8b3eb720aab911.camel@HIDDEN>
From: zimoun <zimon.toutoune@HIDDEN>
Date: Thu, 25 Jul 2019 15:48:15 +0200
Message-ID: <CAJ3okZ15JPdQETN1G4xS-OGyGV97_4t+Keg0eEfpCk18ir82-g@HIDDEN>
Subject: Re: [bug#36805] Small patch to remove TODO for (@@ (guix build-system
 r) bioconductor-uri)
To: Kyle Andrews <kyle.c.andrews@HIDDEN>
Content-Type: text/plain; charset="UTF-8"
X-Spam-Score: 0.0 (/)
X-Debbugs-Envelope-To: 36805
Cc: 36805 <at> debbugs.gnu.org
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: -1.0 (-)

Dear,

It appears to me nice---if for example one wants to create a channel
for Bioconductor 3.6 or older.
This eases the automation of such channel.

I am using the package `cytofkit`, removed in the last release:
https://bioconductor.org/about/removed-packages/

Append strings to build the uri is not really nice.
https://github.com/zimoun/guix-bimsb/blob/master/bimsb/packages/staging.scm#L2895-L2941

Thank you for this suggestion.


All the best,
simon




Information forwarded to guix-patches@HIDDEN:
bug#36805; Package guix-patches. Full text available.

Message received at submit <at> debbugs.gnu.org:


Received: (at submit) by debbugs.gnu.org; 25 Jul 2019 03:44:09 +0000
From debbugs-submit-bounces <at> debbugs.gnu.org Wed Jul 24 23:44:09 2019
Received: from localhost ([127.0.0.1]:38248 helo=debbugs.gnu.org)
	by debbugs.gnu.org with esmtp (Exim 4.84_2)
	(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
	id 1hqUfo-0002YX-St
	for submit <at> debbugs.gnu.org; Wed, 24 Jul 2019 23:44:09 -0400
Received: from lists.gnu.org ([209.51.188.17]:37832)
 by debbugs.gnu.org with esmtp (Exim 4.84_2)
 (envelope-from <kyle.c.andrews@HIDDEN>) id 1hqUCV-0001pl-Pd
 for submit <at> debbugs.gnu.org; Wed, 24 Jul 2019 23:13:52 -0400
Received: from eggs.gnu.org ([2001:470:142:3::10]:38702)
 by lists.gnu.org with esmtp (Exim 4.86_2)
 (envelope-from <kyle.c.andrews@HIDDEN>) id 1hqUCU-0001fe-Jv
 for guix-patches@HIDDEN; Wed, 24 Jul 2019 23:13:51 -0400
X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on eggs.gnu.org
X-Spam-Level: 
X-Spam-Status: No, score=0.8 required=5.0 tests=BAYES_50,FREEMAIL_FROM,
 URIBL_BLOCKED autolearn=disabled version=3.3.2
Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71)
 (envelope-from <kyle.c.andrews@HIDDEN>) id 1hqUCT-0006HW-Fq
 for guix-patches@HIDDEN; Wed, 24 Jul 2019 23:13:50 -0400
Received: from mail-io1-xd29.google.com ([2607:f8b0:4864:20::d29]:37337)
 by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16)
 (Exim 4.71) (envelope-from <kyle.c.andrews@HIDDEN>)
 id 1hqUCT-0006HN-Av
 for guix-patches@HIDDEN; Wed, 24 Jul 2019 23:13:49 -0400
Received: by mail-io1-xd29.google.com with SMTP id q22so94105842iog.4
 for <guix-patches@HIDDEN>; Wed, 24 Jul 2019 20:13:49 -0700 (PDT)
DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025;
 h=message-id:subject:from:to:date:mime-version;
 bh=mcby5qe/LKRNazi49Drmh7DNKI96aqNrrlTRrrQhzoc=;
 b=nQvikzzol1I2+QveERY1Sv7BYOhRCxYgF32L9IRLmEFP7KdsNVPN/euOMWaKevnqB0
 cMTc2stP2n+8FyFXTzV3AwrsdkG/BgZLCGCBHyOFlSW3CYYa0WFlPUJ0VMm8+723Ev4j
 7B0SU9KPmtBYt71PbOmrn1ucxHbiDO/psv2yTS/S4qPO4VYVrkaAFcU4C+ZKydlK7z7l
 IinFoxcawaZRIlq9i3kWH0ADLzCIpA9NcUG3lcLD8MXTXJFbW+qLng4Xx+fPrXAvt/Y0
 /34IctfDPeRTTQPJQEzTzXF5HtSCr+Ckks8OmX23Cgs+tjAtEJ1qjvNRzpO06ZHlPPE9
 r2Cw==
X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed;
 d=1e100.net; s=20161025;
 h=x-gm-message-state:message-id:subject:from:to:date:mime-version;
 bh=mcby5qe/LKRNazi49Drmh7DNKI96aqNrrlTRrrQhzoc=;
 b=XnBnh2meFXwxHf1v8pqq/ycWC0LtQCtENrWPWkCon5MNsvwJ58Ey/xklB+qnpQr5/o
 pa7bOAh1yZtLu/dCuhKgmmSHnvqP/f4FA/UsIzpZ7ImnhB6n0CZ8hdT2QhVAn5Gxfz1d
 1KoPNEYzQoK3zDfTtkJfnT+Z8cn/dz+FHYsN1BpK2S8QlO1L4OTwYIChXSGoY8x41ROw
 sxYkCYugF2jKRWSe1LsANjhhrIYqfm40PI349Bpq7Wk38NItpEFBDf9+4HpfbIp4rsZx
 NLay9oJR2dzgK/nhDM8CAzkBCOCu6pOZlj53k9a9YzEO2YQsknLVaqmYl60798cixznf
 VE5w==
X-Gm-Message-State: APjAAAXv0vuSJWhIe5ifoy0w+gxZusitSDtcKi414othFJTHaxgce6kp
 RjL1J6CO6CobyoS2PDnEeI2jg2ZcLMY=
X-Google-Smtp-Source: APXvYqxVCb8JeI+UY7BJGFdc4Vo2ef7c4db90cakUHJsDwsknD0p1dGlYTIHHVPhr3+MBKOX9akT1Q==
X-Received: by 2002:a02:54c1:: with SMTP id t184mr57992719jaa.10.1564024428169; 
 Wed, 24 Jul 2019 20:13:48 -0700 (PDT)
Received: from [192.168.2.52] (96-35-65-255.dhcp.bycy.mi.charter.com.
 [96.35.65.255])
 by smtp.googlemail.com with ESMTPSA id a7sm38486880iok.19.2019.07.24.20.13.47
 for <guix-patches@HIDDEN>
 (version=TLS1_3 cipher=AEAD-AES256-GCM-SHA384 bits=256/256);
 Wed, 24 Jul 2019 20:13:47 -0700 (PDT)
Message-ID: <92658660d50853e4eec92f536d8b3eb720aab911.camel@HIDDEN>
Subject: Small patch to remove TODO for (@@ (guix build-system r)
 bioconductor-uri)
From: Kyle Andrews <kyle.c.andrews@HIDDEN>
To: guix-patches@HIDDEN
Date: Wed, 24 Jul 2019 23:13:46 -0400
Content-Type: multipart/mixed; boundary="=-JLHHs0GdEZo077KkzsDX"
X-Mailer: Evolution 3.28.1 
Mime-Version: 1.0
X-detected-operating-system: by eggs.gnu.org: Genre and OS details not
 recognized.
X-Received-From: 2607:f8b0:4864:20::d29
X-Spam-Score: -1.3 (-)
X-Debbugs-Envelope-To: submit
X-Mailman-Approved-At: Wed, 24 Jul 2019 23:44:07 -0400
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: -2.3 (--)


--=-JLHHs0GdEZo077KkzsDX
Content-Type: text/plain; charset="UTF-8"
Content-Transfer-Encoding: 7bit

Hi,

I am a heavy R user trying to get my feet wet with guix. Here is a
patch to remove the hard-coded bioconductor release by adding an
optional 3rd argument to the function with an appropriate default
value. I hope this is helpful.

Regards,

Kyle Andrews
--=-JLHHs0GdEZo077KkzsDX
Content-Disposition: attachment;
	filename*0=0001-NAME-and-VERSION-are-not-enough-for-Bioconductor-URI.pat;
	filename*1=ch
Content-Type: text/x-patch;
	name="0001-NAME-and-VERSION-are-not-enough-for-Bioconductor-URI.patch";
	charset="UTF-8"
Content-Transfer-Encoding: base64
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--=-JLHHs0GdEZo077KkzsDX--





Acknowledgement sent to Kyle Andrews <kyle.c.andrews@HIDDEN>:
New bug report received and forwarded. Copy sent to guix-patches@HIDDEN. Full text available.
Report forwarded to guix-patches@HIDDEN:
bug#36805; Package guix-patches. Full text available.
Please note: This is a static page, with minimal formatting, updated once a day.
Click here to see this page with the latest information and nicer formatting.
Last modified: Fri, 26 Jul 2019 10:00:02 UTC

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997 nCipher Corporation Ltd, 1994-97 Ian Jackson.