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From: Ricardo Wurmus <rekado@HIDDEN>
To: Kyle Andrews <kyle.c.andrews@HIDDEN>
Subject: Re: [bug#36805] Small patch to remove TODO for (@@ (guix build-system
r) bioconductor-uri)
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Hi Kyle,
> I find it sometimes convenient to use a modified version of the
> file.path function in R to save me from myself a bit with file paths
> while also adding some semantic markup. Perhaps it would also be useful
> for building Guix packages? Users would then seldom have to worry about
> incorrectly including trailing slashes. I created a code snippet with
> my naive implementation here:
>
> https://gitlab.com/snippets/1879185
>
> Maybe there is already a guile library for this sort of thing?
There is, but it=E2=80=99s a little heavier:
https://gitlab.com/brandoninvergo/guile-file-names
--=20
Ricardo
guix-patches@HIDDEN:bug#36805; Package guix-patches.
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[96.35.65.255]) by smtp.googlemail.com with ESMTPSA id b14sm55794195iod.33.2019.07.25.21.17.05 (version=TLS1_3 cipher=AEAD-AES256-GCM-SHA384 bits=256/256); Thu, 25 Jul 2019 21:17:06 -0700 (PDT) Message-ID: <8a97ec5ed0d1f657731c22593a1f6696af2434dc.camel@HIDDEN> Subject: Re: [bug#36805] Small patch to remove TODO for (@@ (guix build-system r) bioconductor-uri) From: Kyle Andrews <kyle.c.andrews@HIDDEN> To: zimoun <zimon.toutoune@HIDDEN> Date: Fri, 26 Jul 2019 00:17:05 -0400 In-Reply-To: <CAJ3okZ15JPdQETN1G4xS-OGyGV97_4t+Keg0eEfpCk18ir82-g@HIDDEN> References: <92658660d50853e4eec92f536d8b3eb720aab911.camel@HIDDEN> <CAJ3okZ15JPdQETN1G4xS-OGyGV97_4t+Keg0eEfpCk18ir82-g@HIDDEN> Content-Type: text/plain; charset="UTF-8" X-Mailer: Evolution 3.28.1 Mime-Version: 1.0 Content-Transfer-Encoding: 7bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 36805 X-Mailman-Approved-At: Fri, 26 Jul 2019 00:49:12 -0400 Cc: 36805 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) On Thu, 2019-07-25 at 15:48 +0200, zimoun wrote: > Dear, > > It appears to me nice---if for example one wants to create a channel > for Bioconductor 3.6 or older. > This eases the automation of such channel. > > I am using the package `cytofkit`, removed in the last release: > https://bioconductor.org/about/removed-packages/ > > Append strings to build the uri is not really nice. > https://github.com/zimoun/guix-bimsb/blob/master/bimsb/packages/stagi > ng.scm#L2895-L2941 > > Thank you for this suggestion. > > > All the best, > simon Hi Simon, I find it sometimes convenient to use a modified version of the file.path function in R to save me from myself a bit with file paths while also adding some semantic markup. Perhaps it would also be useful for building Guix packages? Users would then seldom have to worry about incorrectly including trailing slashes. I created a code snippet with my naive implementation here: https://gitlab.com/snippets/1879185 Maybe there is already a guile library for this sort of thing? Regards, Kyle
guix-patches@HIDDEN:bug#36805; Package guix-patches.
Full text available.Received: (at 36805) by debbugs.gnu.org; 25 Jul 2019 13:48:35 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Thu Jul 25 09:48:35 2019 Received: from localhost ([127.0.0.1]:38618 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1hqe6l-0004eE-0v for submit <at> debbugs.gnu.org; Thu, 25 Jul 2019 09:48:35 -0400 Received: from mail-qt1-f170.google.com ([209.85.160.170]:44912) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <zimon.toutoune@HIDDEN>) id 1hqe6i-0004e0-MA for 36805 <at> debbugs.gnu.org; Thu, 25 Jul 2019 09:48:33 -0400 Received: by mail-qt1-f170.google.com with SMTP id 44so18080794qtg.11 for <36805 <at> debbugs.gnu.org>; Thu, 25 Jul 2019 06:48:32 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=mime-version:references:in-reply-to:from:date:message-id:subject:to :cc; bh=cqpIKKkxyU3ZpLIKwmf7gzAicbcGenSTJinkVQBdvuQ=; b=Q/zs9wR7kn0nqbSJCg3Jiu2xJqEi+zSn9LwS/OdiKwT9EsHS19psPzRtxVyNVMHb1W 30Q1n2hsjOddoQXquoD2THw3TUuYdaDhyppqn7yHyQMSXZuVh3dHrTtZtMrN2ArjdY3r iBADeXineffwccAqWtyJDI6JsdCvzaUXVYYgd0YaQFFwrNXTO6FIAVuW228PNxcwz/aD ObbiKHUO+8rz/KvLfEMTTxbiReIEUs2wIVVped/EPQL6ckhku90Eo0XlhOMMfycbbGQt WnnqEdfyz6YoLm/0e0FjtXTDzBlVGtSZxRYd2XHCvmhmW8EJTj1anBwnqOOfC2UoXnIL ySNg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:mime-version:references:in-reply-to:from:date :message-id:subject:to:cc; bh=cqpIKKkxyU3ZpLIKwmf7gzAicbcGenSTJinkVQBdvuQ=; b=htgr4b1Fep0m9lwnOHsALjtRZnUpzSyD/gI8To/+veQ8XK/HhcJThuFPN9+lDIfTix H/o2YJS4a8hJ5NZm4dbxzEdUIp1WfOLefAoUpwQVFTGxMJj4PNDZEaeYtVALO7x8e+eg z2+2LeSxYFZNVsnZfw7/dD5L0iL0AY6MKxNlz1TEgncqyEup3/p06jonM87dbtctSxnc Qm1SwE6HiWqSpBj5/m7B6D/zHimylCL9ks0MmwsdLX/fdO3myqaqDAUBSUOkuxL4kfyJ gk6GlDxPB1eky0z4SPDK5+BU42dDMCvDdJUyQKV7PrZE1LCSHCCDNnqEkQGpsoqXXuLu sLyw== X-Gm-Message-State: APjAAAXHH+ol6vfFMzIG5sUaIomGw7FGYDCJqcufuWlh7b4/2mkTv+3h RBcSx1CLyOFQNkcD+NZYW8PVA8Fw+UHPvr0/BEU= X-Google-Smtp-Source: APXvYqzQaqhh7gtpTIVJlbwRSM6igS5Gnp3A/uNnZzNEz4NkULLQjZVfMqs5jgGc5/mKmySIYWeyaKDQyrC+b3qyB94= X-Received: by 2002:a0c:b010:: with SMTP id k16mr64407240qvc.170.1564062507173; Thu, 25 Jul 2019 06:48:27 -0700 (PDT) MIME-Version: 1.0 References: <92658660d50853e4eec92f536d8b3eb720aab911.camel@HIDDEN> In-Reply-To: <92658660d50853e4eec92f536d8b3eb720aab911.camel@HIDDEN> From: zimoun <zimon.toutoune@HIDDEN> Date: Thu, 25 Jul 2019 15:48:15 +0200 Message-ID: <CAJ3okZ15JPdQETN1G4xS-OGyGV97_4t+Keg0eEfpCk18ir82-g@HIDDEN> Subject: Re: [bug#36805] Small patch to remove TODO for (@@ (guix build-system r) bioconductor-uri) To: Kyle Andrews <kyle.c.andrews@HIDDEN> Content-Type: text/plain; charset="UTF-8" X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 36805 Cc: 36805 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) Dear, It appears to me nice---if for example one wants to create a channel for Bioconductor 3.6 or older. This eases the automation of such channel. I am using the package `cytofkit`, removed in the last release: https://bioconductor.org/about/removed-packages/ Append strings to build the uri is not really nice. https://github.com/zimoun/guix-bimsb/blob/master/bimsb/packages/staging.scm#L2895-L2941 Thank you for this suggestion. All the best, simon
guix-patches@HIDDEN:bug#36805; Package guix-patches.
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[96.35.65.255]) by smtp.googlemail.com with ESMTPSA id a7sm38486880iok.19.2019.07.24.20.13.47 for <guix-patches@HIDDEN> (version=TLS1_3 cipher=AEAD-AES256-GCM-SHA384 bits=256/256); Wed, 24 Jul 2019 20:13:47 -0700 (PDT) Message-ID: <92658660d50853e4eec92f536d8b3eb720aab911.camel@HIDDEN> Subject: Small patch to remove TODO for (@@ (guix build-system r) bioconductor-uri) From: Kyle Andrews <kyle.c.andrews@HIDDEN> To: guix-patches@HIDDEN Date: Wed, 24 Jul 2019 23:13:46 -0400 Content-Type: multipart/mixed; boundary="=-JLHHs0GdEZo077KkzsDX" X-Mailer: Evolution 3.28.1 Mime-Version: 1.0 X-detected-operating-system: by eggs.gnu.org: Genre and OS details not recognized. X-Received-From: 2607:f8b0:4864:20::d29 X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit X-Mailman-Approved-At: Wed, 24 Jul 2019 23:44:07 -0400 X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -2.3 (--) --=-JLHHs0GdEZo077KkzsDX Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: 7bit Hi, I am a heavy R user trying to get my feet wet with guix. Here is a patch to remove the hard-coded bioconductor release by adding an optional 3rd argument to the function with an appropriate default value. I hope this is helpful. Regards, Kyle Andrews --=-JLHHs0GdEZo077KkzsDX Content-Disposition: attachment; filename*0=0001-NAME-and-VERSION-are-not-enough-for-Bioconductor-URI.pat; filename*1=ch Content-Type: text/x-patch; name="0001-NAME-and-VERSION-are-not-enough-for-Bioconductor-URI.patch"; charset="UTF-8" Content-Transfer-Encoding: base64 RnJvbSA3MjllNjIxY2MyMTc1ODY0OTM3YjZhNGEzZTc1NGJkMTI4YWM5MDU2IE1vbiBTZXAgMTcg MDA6MDA6MDAgMjAwMQpGcm9tOiBLeWxlIEFuZHJld3MgPGt5bGUuYy5hbmRyZXdzQGdtYWlsLmNv bT4KRGF0ZTogV2VkLCAyNCBKdWwgMjAxOSAyMjo1MToyMCAtMDQwMApTdWJqZWN0OiBbUEFUQ0hd IE5BTUUgYW5kIFZFUlNJT04gYXJlIG5vdCBlbm91Z2ggZm9yIEJpb2NvbmR1Y3RvciBVUkkuIE5l ZWQKIFJFTEVBU0UuCgotLS0KIGd1aXgvYnVpbGQtc3lzdGVtL3Iuc2NtIHwgOSArKysrKy0tLS0K IDEgZmlsZSBjaGFuZ2VkLCA1IGluc2VydGlvbnMoKyksIDQgZGVsZXRpb25zKC0pCgpkaWZmIC0t Z2l0IGEvZ3VpeC9idWlsZC1zeXN0ZW0vci5zY20gYi9ndWl4L2J1aWxkLXN5c3RlbS9yLnNjbQpp bmRleCBmYmYwOGQzYWE3Li45M2IyZjJmMTRmIDEwMDY0NAotLS0gYS9ndWl4L2J1aWxkLXN5c3Rl bS9yLnNjbQorKysgYi9ndWl4L2J1aWxkLXN5c3RlbS9yLnNjbQpAQCAtNDcsMTMgKzQ3LDE0IEBA IGF2YWlsYWJsZSB2aWEgdGhlIGZpcnN0IFVSSSwgdGhlIHNlY29uZCBVUkkgcG9pbnRzIHRvIHRo ZSBhcmNoaXZlZCB2ZXJzaW9uLiIKICAgICAgICAgKHN0cmluZy1hcHBlbmQgIm1pcnJvcjovL2Ny YW4vc3JjL2NvbnRyaWIvQXJjaGl2ZS8iCiAgICAgICAgICAgICAgICAgICAgICAgIG5hbWUgIi8i IG5hbWUgIl8iIHZlcnNpb24gIi50YXIuZ3oiKSkpCiAKLShkZWZpbmUgKGJpb2NvbmR1Y3Rvci11 cmkgbmFtZSB2ZXJzaW9uKQorKGRlZmluZSogKGJpb2NvbmR1Y3Rvci11cmkgbmFtZSB2ZXJzaW9u CisgICAgICAgICAgICAgICAgICAgICAgICAgICAjOm9wdGlvbmFsCisgICAgICAgICAgICAgICAg ICAgICAgICAgICAocmVsZWFzZSAoQEAgKGd1aXggaW1wb3J0IGNyYW4pICViaW9jb25kdWN0b3It dmVyc2lvbikpKQogICAiUmV0dXJuIGEgVVJJIHN0cmluZyBmb3IgdGhlIFIgcGFja2FnZSBhcmNo aXZlIG9uIEJpb2NvbmR1Y3RvciBmb3IgdGhlCi1yZWxlYXNlIGNvcnJlc3BvbmRpbmcgdG8gTkFN RSBhbmQgVkVSU0lPTi4iCityZWxlYXNlIGNvcnJlc3BvbmRpbmcgdG8gTkFNRSwgcGFja2FnZSBW RVJTSU9OLCBhbmQgQmlvY29uZHVjdG9yIFJFTEVBU0UuIgogICAobGlzdCAoc3RyaW5nLWFwcGVu ZCAiaHR0cHM6Ly9iaW9jb25kdWN0b3Iub3JnL3BhY2thZ2VzL3JlbGVhc2UvYmlvYy9zcmMvY29u dHJpYi8iCiAgICAgICAgICAgICAgICAgICAgICAgIG5hbWUgIl8iIHZlcnNpb24gIi50YXIuZ3oi KQotICAgICAgICAoc3RyaW5nLWFwcGVuZCAiaHR0cHM6Ly9iaW9jb25kdWN0b3Iub3JnL3BhY2th Z2VzLyIKLSAgICAgICAgICAgICAgICAgICAgICAgKEBAIChndWl4IGltcG9ydCBjcmFuKSAlYmlv Y29uZHVjdG9yLXZlcnNpb24pCisgICAgICAgIChzdHJpbmctYXBwZW5kICJodHRwczovL2Jpb2Nv bmR1Y3Rvci5vcmcvcGFja2FnZXMvIiByZWxlYXNlCiAgICAgICAgICAgICAgICAgICAgICAgICIv YmlvYy9zcmMvY29udHJpYi9BcmNoaXZlLyIKICAgICAgICAgICAgICAgICAgICAgICAgbmFtZSAi XyIgdmVyc2lvbiAiLnRhci5neiIpKSkKIAotLSAKMi4yMi4wCgo= --=-JLHHs0GdEZo077KkzsDX--
Kyle Andrews <kyle.c.andrews@HIDDEN>:guix-patches@HIDDEN.
Full text available.guix-patches@HIDDEN:bug#36805; Package guix-patches.
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