GNU bug report logs - #38454
[PATCH] gnu: lapack: Update to 3.9.0.

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Package: guix-patches; Reported by: Konrad Hinsen <konrad.hinsen@HIDDEN>; Keywords: patch; dated Mon, 2 Dec 2019 08:08:01 UTC; Maintainer for guix-patches is guix-patches@HIDDEN.

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From: =?utf-8?Q?Ludovic_Court=C3=A8s?= <ludovic.courtes@HIDDEN>
To: Konrad Hinsen <konrad.hinsen@HIDDEN>
Subject: Re: [bug#38454] [PATCH] gnu: lapack: Update to 3.9.0.
References: <m1y2vv1785.fsf@HIDDEN>
Date: Mon, 09 Dec 2019 18:31:34 +0100
In-Reply-To: <m1y2vv1785.fsf@HIDDEN> (Konrad
 Hinsen's message of "Thu, 28 Nov 2019 22:11:55 +0100")
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Hi Konrad,

Konrad Hinsen <konrad.hinsen@HIDDEN> skribis:

> * gnu/packages/maths.scm (lapack): Update to 3.9.0.

Unfortunately this fails to build on armhf-linux (tested via
qemu-binfmt):

--8<---------------cut here---------------start------------->8---
starting phase `configure'
source directory: "/tmp/guix-build-lapack-3.9.0.drv-0/lapack-3.9.0" (relati=
ve from build: "../lapack-3.9.0")
build directory: "/tmp/guix-build-lapack-3.9.0.drv-0/build"
running 'cmake' with arguments ("../lapack-3.9.0" "-DCMAKE_BUILD_TYPE=3DRel=
WithDebInfo" "-DCMAKE_INSTALL_PREFIX=3D/gnu/store/ynakjwrsq06j7q75ysqfrmhp8=
mhhdxrb-lapack-3.9.0" "-DCMAKE_INSTALL_LIBDIR=3Dlib" "-DCMAKE_INSTALL_RPATH=
_USE_LINK_PATH=3DTRUE" "-DCMAKE_INSTALL_RPATH=3D/gnu/store/ynakjwrsq06j7q75=
ysqfrmhp8mhhdxrb-lapack-3.9.0/lib" "-DCMAKE_VERBOSE_MAKEFILE=3DON" "-DBUILD=
_SHARED_LIBS:BOOL=3DYES" "-DLAPACKE=3DON" "-DLAPACKE_WITH_TMG=3DON" "-DBUIL=
D_TESTING=3DON")
-- The Fortran compiler identification is unknown
CMake Error at /gnu/store/lxj8wisj7ylwc67x1rshiw24fb5digx5-cmake-minimal-3.=
15.1/share/cmake-3.15/Modules/CMakeCompilerIdDetection.cmake:26 (list):
  list sub-command REMOVE_ITEM requires two or more arguments.
Call Stack (most recent call first):
  /gnu/store/lxj8wisj7ylwc67x1rshiw24fb5digx5-cmake-minimal-3.15.1/share/cm=
ake-3.15/Modules/CMakeDetermineCompilerId.cmake:211 (compiler_id_detection)
  /gnu/store/lxj8wisj7ylwc67x1rshiw24fb5digx5-cmake-minimal-3.15.1/share/cm=
ake-3.15/Modules/CMakeDetermineCompilerId.cmake:230 (CMAKE_DETERMINE_COMPIL=
ER_ID_WRITE)
  /gnu/store/lxj8wisj7ylwc67x1rshiw24fb5digx5-cmake-minimal-3.15.1/share/cm=
ake-3.15/Modules/CMakeDetermineCompilerId.cmake:32 (CMAKE_DETERMINE_COMPILE=
R_ID_BUILD)
  /gnu/store/lxj8wisj7ylwc67x1rshiw24fb5digx5-cmake-minimal-3.15.1/share/cm=
ake-3.15/Modules/CMakeDetermineCCompiler.cmake:116 (CMAKE_DETERMINE_COMPILE=
R_ID)
  CMakeLists.txt:3 (project)

[=E2=80=A6 repeated several times=E2=80=A6]

-- The C compiler identification is unknown
-- Check for working Fortran compiler: /gnu/store/91iyya22d6s055iwlwja3vvlp=
c4i8sih-gfortran-7.4.0/bin/gfortran
-- Check for working Fortran compiler: /gnu/store/91iyya22d6s055iwlwja3vvlp=
c4i8sih-gfortran-7.4.0/bin/gfortran  -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /gnu/store/91iyya22d6s055iwlwja3vvlpc4i8sih-gfortran-7.=
4.0/bin/gfortran supports Fortran 90
-- Checking whether /gnu/store/91iyya22d6s055iwlwja3vvlpc4i8sih-gfortran-7.=
4.0/bin/gfortran supports Fortran 90 -- yes
-- Check for working C compiler: /gnu/store/pkx3kcvj1mbkkgzxi1w57c1vfvhwzxh=
7-gcc-7.4.0/bin/gcc
-- Check for working C compiler: /gnu/store/pkx3kcvj1mbkkgzxi1w57c1vfvhwzxh=
7-gcc-7.4.0/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Checking if build type is 'Coverage'
-- Checking if build type is 'Coverage': 0
-- Build tests: ON
-- Looking for Python >=3D 2.7 needed for summary tests
-- Looking for Python >=3D 2.7 needed for summary tests - found (3.7.4)
-- Reducing RELEASE optimization level to O2
-- Looking for Fortran NONE - found
-- Looking for Fortran INT_CPU_TIME - found
-- Looking for Fortran EXT_ETIME - not found
-- Looking for Fortran EXT_ETIME_ - not found
-- Looking for Fortran INT_ETIME - found
-- --> Will use second_INT_ETIME.f and dsecnd_INT_ETIME.f as timing functio=
n.
-- Build deprecated routines: OFF
-- Build single precision real: ON
-- Build double precision real: ON
-- Build single precision complex: ON
-- Build double precision complex: ON
-- Using supplied NETLIB BLAS implementation
-- Using supplied NETLIB LAPACK implementation
-- Running Summary
-- LAPACKE enable
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- Verifying Fortran/C Compiler Compatibility
-- Verifying Fortran/C Compiler Compatibility - Success
-- Build LAPACKE single precision real: ON
-- Build LAPACKE double precision real: ON
-- Build LAPACKE single precision complex: ON
-- Build LAPACKE double precision complex: ON
-- Configuring incomplete, errors occurred!
See also "/tmp/guix-build-lapack-3.9.0.drv-0/build/CMakeFiles/CMakeOutput.l=
og".
See also "/tmp/guix-build-lapack-3.9.0.drv-0/build/CMakeFiles/CMakeError.lo=
g".
command "cmake" "../lapack-3.9.0" "-DCMAKE_BUILD_TYPE=3DRelWithDebInfo" "-D=
CMAKE_INSTALL_PREFIX=3D/gnu/store/ynakjwrsq06j7q75ysqfrmhp8mhhdxrb-lapack-3=
.9.0" "-DCMAKE_INSTALL_LIBDIR=3Dlib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=
=3DTRUE" "-DCMAKE_INSTALL_RPATH=3D/gnu/store/ynakjwrsq06j7q75ysqfrmhp8mhhdx=
rb-lapack-3.9.0/lib" "-DCMAKE_VERBOSE_MAKEFILE=3DON" "-DBUILD_SHARED_LIBS:B=
OOL=3DYES" "-DLAPACKE=3DON" "-DLAPACKE_WITH_TMG=3DON" "-DBUILD_TESTING=3DON=
" failed with status 1
builder for `/gnu/store/hib5k6rq3kdgd0gf6rnfpj9v9d31xfv7-lapack-3.9.0.drv' =
failed with exit code 1
@ build-failed /gnu/store/hib5k6rq3kdgd0gf6rnfpj9v9d31xfv7-lapack-3.9.0.drv=
 - 1 builder for `/gnu/store/hib5k6rq3kdgd0gf6rnfpj9v9d31xfv7-lapack-3.9.0.=
drv' failed with exit code 1
--8<---------------cut here---------------end--------------->8---

Could you check if the intertubes have fixes for that?  :-)

Thanks!

Ludo=E2=80=99.




Information forwarded to guix-patches@HIDDEN:
bug#38454; Package guix-patches. Full text available.

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From: Konrad Hinsen <konrad.hinsen@HIDDEN>
To: guix-patches@HIDDEN
Subject: [PATCH] gnu: lapack: Update to 3.9.0.
Date: Thu, 28 Nov 2019 22:11:55 +0100
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* gnu/packages/maths.scm (lapack): Update to 3.9.0.
---
 gnu/packages/maths.scm | 18 +++++-------------
 1 file changed, 5 insertions(+), 13 deletions(-)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 16e070eeff..de45bdfed3 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -544,7 +544,7 @@ large scale eigenvalue problems.")
 (define-public lapack
   (package
     (name "lapack")
-    (version "3.7.1")
+    (version "3.9.0")
     (source
      (origin
       (method url-fetch)
@@ -552,26 +552,18 @@ large scale eigenvalue problems.")
                           version ".tgz"))
       (sha256
        (base32
-        "1j51r7n5w4k7r3lrvy7710xrpkg40wf4rqnmngfz6ck9ypckzign"))))
+        "1155qixp26c12yrxc76z9mlfw2h3xxymxxv5znpgzh5gaykpndgj"))))
     (build-system cmake-build-system)
     (home-page "http://www.netlib.org/lapack/")
     (inputs `(("fortran" ,gfortran)
-              ("python" ,python-2)))
+              ("python" ,python-wrapper)))
     (arguments
      `(#:configure-flags (list
                           "-DBUILD_SHARED_LIBS:BOOL=YES"
                           "-DLAPACKE=ON"
-
                           ;; Build the 'LAPACKE_clatms' functions.
-                          "-DLAPACKE_WITH_TMG=ON")
-       #:phases
-       (modify-phases %standard-phases
-         (add-before 'check 'patch-python
-           (lambda* (#:key inputs #:allow-other-keys)
-             (let ((python (assoc-ref inputs "python")))
-               (substitute* "lapack_testing.py"
-                 (("/usr/bin/env python") python)))
-             #t)))))
+                          "-DLAPACKE_WITH_TMG=ON"
+                          "-DBUILD_TESTING=ON")))
     (synopsis "Library for numerical linear algebra")
     (description
      "LAPACK is a Fortran 90 library for solving the most commonly occurring
-- 
2.24.0





Acknowledgement sent to Konrad Hinsen <konrad.hinsen@HIDDEN>:
New bug report received and forwarded. Copy sent to guix-patches@HIDDEN. Full text available.
Report forwarded to guix-patches@HIDDEN:
bug#38454; Package guix-patches. Full text available.
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Click here to see this page with the latest information and nicer formatting.
Last modified: Mon, 9 Dec 2019 17:30:02 UTC

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