GNU bug report logs - #42106
[PATCH] gnu: Add r-sparklyr and its dependencies

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Lo Peter <peterloleungyau <at> gmail.com>
To: guix-patches <at> gnu.org
Subject: [PATCH] gnu: Add r-sparklyr and its dependencies
Date: Sun, 28 Jun 2020 16:56:20 +0800

Dear all,

I am submitting a patch series of r-sparklyr and its dependencies.

Regards,
Peter

Message #8 received at 42106 <at> debbugs.gnu.org (full text, mbox):

From: Peter Lo <peterloleungyau <at> gmail.com>
To: 42106 <at> debbugs.gnu.org
Cc: Peter Lo <peterloleungyau <at> gmail.com>
Subject: [PATCH 1/4] gnu: Add r-r2d3.
Date: Sun, 28 Jun 2020 16:57:42 +0800

* gnu/packages/cran.scm (r-r2d3): New variable.
---
 gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index ab5e57c0e2..b92d3341b4 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -22325,3 +22325,33 @@ across a wide array of bioinformatic R packages.")
 and clustering large sequence datasets using fast alignment-free k-mer
 counting and recursive k-means partitioning.")
     (license license:gpl3)))
+
+(define-public r-r2d3
+  (package
+    (name "r-r2d3")
+    (version "0.2.3")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "r2d3" version))
+        (sha256
+          (base32
+            "0v612mbzdjr8cq1ffall9hagbwxfv7fh963x8f0w5r84v1m3y2bl"))))
+    (properties `((upstream-name . "r2d3")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-htmltools" ,r-htmltools)
+        ("r-htmlwidgets" ,r-htmlwidgets)
+        ("r-jsonlite" ,r-jsonlite)
+        ("r-rstudioapi" ,r-rstudioapi)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page "https://github.com/rstudio/r2d3")
+    (synopsis "Interface to 'D3' Visualizations")
+    (description
+      "Suite of tools for using @code{D3}, a library for producing dynamic,
+interactive data visualizations.  Supports translating objects into
+@code{D3} friendly data structures, rendering @code{D3} scripts,
+publishing @code{D3} visualizations, incorporating @code{D3} in R
+Markdown, creating interactive @code{D3} applications with Shiny, and
+distributing @code{D3} based @code{htmlwidgets} in R packages.")
+    (license license:bsd-3)))
-- 
2.17.1

Message #11 received at 42106 <at> debbugs.gnu.org (full text, mbox):

From: Peter Lo <peterloleungyau <at> gmail.com>
To: 42106 <at> debbugs.gnu.org
Cc: Peter Lo <peterloleungyau <at> gmail.com>
Subject: [PATCH 2/4] gnu: Add r-forge.
Date: Sun, 28 Jun 2020 16:57:43 +0800

* gnu/packages/cran.scm (r-forge): New variable.
---
 gnu/packages/cran.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b92d3341b4..93a487deb3 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -22355,3 +22355,26 @@ publishing @code{D3} visualizations, incorporating @code{D3} in R
 Markdown, creating interactive @code{D3} applications with Shiny, and
 distributing @code{D3} based @code{htmlwidgets} in R packages.")
     (license license:bsd-3)))
+
+(define-public r-forge
+  (package
+    (name "r-forge")
+    (version "0.2.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "forge" version))
+        (sha256
+          (base32
+            "0pjfzsc35agkh0zfw2czwajkbsyn6liys5irl5bhz5r1vim3jmwa"))))
+    (properties `((upstream-name . "forge")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-magrittr" ,r-magrittr) ("r-rlang" ,r-rlang)))
+    (home-page
+      "https://cran.r-project.org/web/packages/forge/")
+    (synopsis "Casting Values into Shape")
+    (description
+      "Helper functions with a consistent interface to coerce and
+verify the types and shapes of values for input checking.")
+    (license license:asl2.0)))
-- 
2.17.1

Message #14 received at 42106 <at> debbugs.gnu.org (full text, mbox):

From: Peter Lo <peterloleungyau <at> gmail.com>
To: 42106 <at> debbugs.gnu.org
Cc: Peter Lo <peterloleungyau <at> gmail.com>
Subject: [PATCH 3/4] gnu: Add r-config.
Date: Sun, 28 Jun 2020 16:57:44 +0800

* gnu/packages/cran.scm (r-config): New variable.
---
 gnu/packages/cran.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 93a487deb3..8d72cfdd78 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -22378,3 +22378,28 @@ distributing @code{D3} based @code{htmlwidgets} in R packages.")
       "Helper functions with a consistent interface to coerce and
 verify the types and shapes of values for input checking.")
     (license license:asl2.0)))
+
+(define-public r-config
+  (package
+    (name "r-config")
+    (version "0.3")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "config" version))
+        (sha256
+          (base32
+            "0l67nfpm42ssnk0bl4jmq6bibz8hawgfgh2s14s5c8mnimv6mpjs"))))
+    (properties `((upstream-name . "config")))
+    (build-system r-build-system)
+    (propagated-inputs `(("r-yaml" ,r-yaml)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page "https://github.com/rstudio/config")
+    (synopsis
+      "Manage Environment Specific Configuration Values")
+    (description
+      "Manage configuration values across multiple environments (e.g.
+development, test, production).  Read values using a function that
+determines the current environment and returns the appropriate
+value.")
+    (license license:gpl3)))
-- 
2.17.1

Message #17 received at 42106 <at> debbugs.gnu.org (full text, mbox):

From: Peter Lo <peterloleungyau <at> gmail.com>
To: 42106 <at> debbugs.gnu.org
Cc: Peter Lo <peterloleungyau <at> gmail.com>
Subject: [PATCH 4/4] gnu: Add r-sparklyr.
Date: Sun, 28 Jun 2020 16:57:45 +0800

* gnu/packages/cran.scm (r-sparklyr): New variable.
---
 gnu/packages/cran.scm | 50 +++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 50 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 8d72cfdd78..4746b74777 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -22403,3 +22403,53 @@ development, test, production).  Read values using a function that
 determines the current environment and returns the appropriate
 value.")
     (license license:gpl3)))
+
+(define-public r-sparklyr
+  (package
+    (name "r-sparklyr")
+    (version "1.3.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "sparklyr" version))
+        (sha256
+          (base32
+            "15arppq15snihhzk7dwc25ihz7xdn4bxscs5rp4jnfsd643kq0bj"))))
+    (properties `((upstream-name . "sparklyr")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-assertthat" ,r-assertthat)
+        ("r-base64enc" ,r-base64enc)
+        ("r-config" ,r-config)
+        ("r-dbi" ,r-dbi)
+        ("r-dbplyr" ,r-dbplyr)
+        ("r-digest" ,r-digest)
+        ("r-dplyr" ,r-dplyr)
+        ("r-ellipsis" ,r-ellipsis)
+        ("r-forge" ,r-forge)
+        ("r-generics" ,r-generics)
+        ("r-globals" ,r-globals)
+        ("r-httr" ,r-httr)
+        ("r-jsonlite" ,r-jsonlite)
+        ("r-openssl" ,r-openssl)
+        ("r-purrr" ,r-purrr)
+        ("r-r2d3" ,r-r2d3)
+        ("r-rappdirs" ,r-rappdirs)
+        ("r-rjson" ,r-rjson)
+        ("r-rlang" ,r-rlang)
+        ("r-rprojroot" ,r-rprojroot)
+        ("r-rstudioapi" ,r-rstudioapi)
+        ("r-tibble" ,r-tibble)
+        ("r-tidyr" ,r-tidyr)
+        ("r-uuid" ,r-uuid)
+        ("r-withr" ,r-withr)
+        ("r-xml2" ,r-xml2)))
+    (home-page "https://spark.rstudio.com/")
+    (synopsis "R Interface to Apache Spark")
+    (description
+      "R interface to Apache Spark, a fast and general engine for big
+data processing, see <http://spark.apache.org>.  This package supports
+connecting to local and remote Apache Spark clusters, provides a
+@code{dplyr} compatible back-end, and provides an interface to Spark's
+built-in machine learning algorithms.")
+    (license license:asl2.0)))
-- 
2.17.1

Message #20 received at 42106 <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Peter Lo <peterloleungyau <at> gmail.com>
Cc: 42106 <at> debbugs.gnu.org
Subject: Re: [bug#42106] [PATCH 1/4] gnu: Add r-r2d3.
Date: Fri, 11 Sep 2020 11:19:01 +0200

Hi Peter,

> * gnu/packages/cran.scm (r-r2d3): New variable.

Unfortunately, I cannot merge this as is.  This package contains a bunch
of minified JavaScript files without the corresponding source code:

--8<---------------cut here---------------start------------->8---
r2d3/inst/www/d3/4.13.0/d3.min.js
r2d3/inst/www/d3/3.5.17/d3.min.js
r2d3/inst/www/d3/5.0.0/d3.min.js
r2d3/inst/htmlwidgets/lib/webcomponents/webcomponents.js
--8<---------------cut here---------------end--------------->8---

While we can easily replace the different d3 versions with non-minified
source code that we then minify in a build phase, we cannot do this for
webcomponents.js, which is compiled from TypeScript.  The source code is
here:

    https://github.com/webcomponents/polyfills/tree/master/packages/webcomponentsjs

Arun is currently working on packaging swc, a transpiler that supports
TypeScript, so with some luck we might then be able to transpile these
TypeScript source files to webcomponents.js.

Until then I cannot merge this, I’m afraid.

-- 
Ricardo

Message #23 received at 42106 <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Lo Peter <peterloleungyau <at> gmail.com>
Cc: 42106 <at> debbugs.gnu.org
Subject: Re: [bug#42106] [PATCH] gnu: Add r-sparklyr and its dependencies
Date: Fri, 11 Sep 2020 11:26:53 +0200

Hi Peter,

> I am submitting a patch series of r-sparklyr and its dependencies.

While I could not apply r-r2d3 due to included minified JavaScript (and
thus couldn’t add r-sparklyr), I did apply your patches for r-forge and
r-config after changing the synopses, descriptions, and indentation.

Pushed to the “master” branch with commit 1c87536287.

-- 
Ricardo

Message #26 received at 42106 <at> debbugs.gnu.org (full text, mbox):

From: Lo Peter <peterloleungyau <at> gmail.com>
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: 42106 <at> debbugs.gnu.org
Subject: Re: [bug#42106] [PATCH 1/4] gnu: Add r-r2d3.
Date: Sat, 12 Sep 2020 15:54:25 +0800

Dear Ricardo,

Sorry that I was not aware of the problem regarding the javascript for
the R package, because I simply import it from CRAN. I will try to be
more careful in the future.

Regards,
Peter

On Fri, Sep 11, 2020 at 5:17 PM Ricardo Wurmus <rekado <at> elephly.net> wrote:
>
>
> Hi Peter,
>
> > * gnu/packages/cran.scm (r-r2d3): New variable.
>
> Unfortunately, I cannot merge this as is.  This package contains a bunch
> of minified JavaScript files without the corresponding source code:
>
> --8<---------------cut here---------------start------------->8---
> r2d3/inst/www/d3/4.13.0/d3.min.js
> r2d3/inst/www/d3/3.5.17/d3.min.js
> r2d3/inst/www/d3/5.0.0/d3.min.js
> r2d3/inst/htmlwidgets/lib/webcomponents/webcomponents.js
> --8<---------------cut here---------------end--------------->8---
>
> While we can easily replace the different d3 versions with non-minified
> source code that we then minify in a build phase, we cannot do this for
> webcomponents.js, which is compiled from TypeScript.  The source code is
> here:
>
>     https://github.com/webcomponents/polyfills/tree/master/packages/webcomponentsjs
>
> Arun is currently working on packaging swc, a transpiler that supports
> TypeScript, so with some luck we might then be able to transpile these
> TypeScript source files to webcomponents.js.
>
> Until then I cannot merge this, I’m afraid.
>
> --
> Ricardo

Message #29 received at 42106 <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Peter Lo <peterloleungyau <at> gmail.com>
Cc: 42106 <at> debbugs.gnu.org
Subject: Re: [bug#42106] [PATCH 1/4] gnu: Add r-r2d3.
Date: Mon, 30 Aug 2021 16:03:22 +0200

Ricardo Wurmus <rekado <at> elephly.net> writes:

> Hi Peter,
>
>> * gnu/packages/cran.scm (r-r2d3): New variable.
>
> Unfortunately, I cannot merge this as is.  This package contains 
> a bunch
> of minified JavaScript files without the corresponding source 
> code:
>
> --8<---------------cut 
> here---------------start------------->8---
> r2d3/inst/www/d3/4.13.0/d3.min.js
> r2d3/inst/www/d3/3.5.17/d3.min.js
> r2d3/inst/www/d3/5.0.0/d3.min.js
> r2d3/inst/htmlwidgets/lib/webcomponents/webcomponents.js
> --8<---------------cut 
> here---------------end--------------->8---
>
> While we can easily replace the different d3 versions with 
> non-minified
> source code that we then minify in a build phase, we cannot do 
> this for
> webcomponents.js, which is compiled from TypeScript.  The source 
> code is
> here:
>
>     https://github.com/webcomponents/polyfills/tree/master/packages/webcomponentsjs

webcomponents.js looks very similar to this blob:

https://github.com/webcomponents/webcomponentsjs/blob/v2.0.1/webcomponents-bundle.js

> Arun is currently working on packaging swc, a transpiler that 
> supports
> TypeScript, so with some luck we might then be able to transpile 
> these
> TypeScript source files to webcomponents.js.

It’s a bit more complicated than that.  The source files import 
code from files in node_modules, which is supposed to be 
downloaded with npm.  If we can identify these actual source files 
we could include them explicitly.

-- 
Ricardo

Message #36 received at 42106-submitter <at> debbugs.gnu.org (full text, mbox):

From: Steve George <steve <at> futurile.net>
To: control <at> debbugs.gnu.org
Cc: 42106-submitter <at> debbugs.gnu.org
Subject: closing 42106
Date: Mon, 7 Oct 2024 19:20:34 +0100

close 42106
Looks like we're done on this one, so closing.
thanks

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