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From: zimoun <zimon.toutoune@HIDDEN>
To: 44256 <at> debbugs.gnu.org
Subject: Re: bug#44256: =?utf-8?Q?=E2=80=9Cguix?= import cran -a
bioconductor =?utf-8?Q?FOO=E2=80=9D?= downloads twice
References: <865z6v4vuw.fsf@HIDDEN>
Date: Thu, 25 Feb 2021 16:28:26 +0100
In-Reply-To: <865z6v4vuw.fsf@HIDDEN> (zimoun's message of "Tue, 27 Oct 2020
14:55:03 +0100")
Message-ID: <87sg5kcgkl.fsf@HIDDEN>
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Content preview: Hi, On Tue, 27 Oct 2020 at 14:55, zimoun wrote: > $ guix import
cran -a bioconductor CATALYST > > Starting download of /tmp/guix-file.OPtOW1
>>From https://bioconductor.org/packages/release/bioc/src/contrib/CATALYST_1.12.2.tar.gz...
> …12.2.tar.g [...]
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Content preview: Hi, On Tue, 27 Oct 2020 at 14:55, zimoun wrote: > $ guix import
cran -a bioconductor CATALYST > > Starting download of /tmp/guix-file.OPtOW1
>>From https://bioconductor.org/packages/release/bioc/src/contrib/CATALYST_1.12.2.tar.gz...
> …12.2.tar.g [...]
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Hi,
On Tue, 27 Oct 2020 at 14:55, zimoun <zimon.toutoune@HIDDEN> wrote:
> $ guix import cran -a bioconductor CATALYST
>
> Starting download of /tmp/guix-file.OPtOW1
>>From https://bioconductor.org/packages/release/bioc/src/contrib/CATALYST_=
1.12.2.tar.gz...
> =E2=80=A612.2.tar.gz 10.2MiB 567KiB/s 00:18 [###########=
#######] 100.0%
>
> Starting download of /tmp/guix-file.V6sC1Z
>>From https://bioconductor.org/packages/release/bioc/src/contrib/CATALYST_=
1.12.2.tar.gz...
> =E2=80=A612.2.tar.gz 10.2MiB 565KiB/s 00:19 [###########=
#######] 100.0%
>
> I have not investigated more, if the issue is from the importer or from
> the information provided by Bioconductor.
It comes from =E2=80=99cran->guix-package=E2=80=99 in (guix import cran):
--8<---------------cut here---------------start------------->8---
(let ((description (fetch-description repo package-name)))
(if description
(description->package repo description)
--8<---------------cut here---------------end--------------->8---
where =E2=80=99fetch-description=E2=80=99 effectively downloads but then
=E2=80=99description->package=E2=80=99 downloads again:
--8<---------------cut here---------------start------------->8---
(source (download source-url #:method (cond
(git? 'git)
(hg? 'hg)
(else #f))))
--8<---------------cut here---------------end--------------->8---
This second download is not necessary. The fix needs some care with the
different repositories.
Cheers,
simon
bug-guix@HIDDEN:bug#44256; Package guix.
Full text available.Received: (at submit) by debbugs.gnu.org; 27 Oct 2020 13:55:13 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Tue Oct 27 09:55:13 2020 Received: from localhost ([127.0.0.1]:43664 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1kXPRR-0002on-4x for submit <at> debbugs.gnu.org; Tue, 27 Oct 2020 09:55:13 -0400 Received: from lists.gnu.org ([209.51.188.17]:34420) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <zimon.toutoune@HIDDEN>) id 1kXPRP-0002nq-9P for submit <at> debbugs.gnu.org; Tue, 27 Oct 2020 09:55:11 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:35130) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <zimon.toutoune@HIDDEN>) id 1kXPRO-0001rV-V7 for bug-guix@HIDDEN; Tue, 27 Oct 2020 09:55:10 -0400 Received: from mail-wr1-x432.google.com ([2a00:1450:4864:20::432]:34535) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from <zimon.toutoune@HIDDEN>) id 1kXPRN-0003vu-1O for bug-guix@HIDDEN; Tue, 27 Oct 2020 09:55:10 -0400 Received: by mail-wr1-x432.google.com with SMTP id i1so2051521wro.1 for <bug-guix@HIDDEN>; Tue, 27 Oct 2020 06:55:08 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:subject:date:message-id:mime-version :content-transfer-encoding; bh=V/nqdddIq1c9et+i0x7FC/xmESppElgg5ypqW+S9d6k=; b=FT26X3bNpg6OWsvP3ucCj7NrsjIbxSpdwvNWF7UcC/fT3n0/rmZHyWszriMd3l5Z4N SlgF0/z+aypiMl+Mc5dbPP4QVcbZXU5RKIiEnlXPsRQizZl/08jgZ1OlAtn9Mm1sWw5y WqiP2jJzgXkGpPShRGqGowNAQdYwH4DTcuYBwHjX0WvLM0vE9wyBd9oy6aLCrcMawar6 0qEnPna/N3V1pzqfaQZXBTPCWfoK9vnWXmFdIfkvNKB26Y3k4A2xu5RD/huOLyNdi0bK IMxmErwhEkYvS7fjxavpq4OqvkWMYscHNSOcwyjKThkvW1Ti5msjDGFV4uQ9YcJisIsa RLIA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:subject:date:message-id:mime-version :content-transfer-encoding; bh=V/nqdddIq1c9et+i0x7FC/xmESppElgg5ypqW+S9d6k=; b=FYKJK649ByT9KsJFTRYr0GWqQU22OmoDr1iecfJ+JfBtGao0RGbBTV/Gq5KFYbyjHG 5Ul6ssuH62EOp2YLrdjQrGV7iFcm3l1FNQp5Qcw3VoM0jDOC9xJskNWghx1yaJycKiGX xtEHa8fVgfD2KdXSmJis48MO2ApKP7uNluNuRmoTRqTbV4Lh+wbd/IOf17lSQoWlQdpi e+DtYXgjSGQM/X2i1jw2ejsbWCfxsNWEE7jW78YUx1AI0B4KsjdS+ZujIxeXr2spRzao wh67jXFGfiIJwlkMJa3XYyjj0N8Qw+V5Qff4+xJemkZwaBk3XXIDR2xYMaQjzGbl9o6A zUTA== X-Gm-Message-State: AOAM530CiVCnbDMliG8X8RK6KGbpMVNe1J+JheW7TgYjjZwr//gL3q3n 75vxli1UFPEVrL+xzcpEPs8uH7ENLFg= X-Google-Smtp-Source: ABdhPJxN+s665/2Mu4OA7hoswBmzYiAr7U8ksTanyAk6REus+mek4kWh+u5ZqwZRDDpPamY7rL9uag== X-Received: by 2002:adf:d841:: with SMTP id k1mr3029127wrl.227.1603806905770; Tue, 27 Oct 2020 06:55:05 -0700 (PDT) Received: from lili ([2a01:e0a:59b:9120:65d2:2476:f637:db1e]) by smtp.gmail.com with ESMTPSA id v6sm1901948wmj.6.2020.10.27.06.55.04 for <bug-guix@HIDDEN> (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 27 Oct 2020 06:55:05 -0700 (PDT) From: zimoun <zimon.toutoune@HIDDEN> To: bug-guix@HIDDEN Subject: =?utf-8?Q?=E2=80=9Cguix?= import cran -a bioconductor =?utf-8?Q?F?= =?utf-8?Q?OO=E2=80=9D?= downloads twice Date: Tue, 27 Oct 2020 14:55:03 +0100 Message-ID: <865z6v4vuw.fsf@HIDDEN> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Received-SPF: pass client-ip=2a00:1450:4864:20::432; envelope-from=zimon.toutoune@HIDDEN; helo=mail-wr1-x432.google.com X-detected-operating-system: by eggs.gnu.org: No matching host in p0f cache. That's all we know. X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.4 (/) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -2.3 (--) Dear, --8<---------------cut here---------------start------------->8--- $ guix import cran -a bioconductor CATALYST Starting download of /tmp/guix-file.OPtOW1 From https://bioconductor.org/packages/release/bioc/src/contrib/CATALYST_1.= 12.2.tar.gz... =E2=80=A612.2.tar.gz 10.2MiB 567KiB/s 00:18 [#############= #####] 100.0% Starting download of /tmp/guix-file.V6sC1Z From https://bioconductor.org/packages/release/bioc/src/contrib/CATALYST_1.= 12.2.tar.gz... =E2=80=A612.2.tar.gz 10.2MiB 565KiB/s 00:19 [#############= #####] 100.0% --8<---------------cut here---------------end--------------->8--- I have not investigated more, if the issue is from the importer or from the information provided by Bioconductor. All the best, simon
zimoun <zimon.toutoune@HIDDEN>:bug-guix@HIDDEN.
Full text available.bug-guix@HIDDEN:bug#44256; Package guix.
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