GNU bug report logs -
#46448
[PATCH] gnu: bowtie1: Update to 1.3.0.
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Report forwarded
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guix-patches <at> gnu.org
:
bug#46448
; Package
guix-patches
.
(Thu, 11 Feb 2021 21:05:02 GMT)
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Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
:
New bug report received and forwarded. Copy sent to
guix-patches <at> gnu.org
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(Thu, 11 Feb 2021 21:05:02 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/bioinformatics.scm (bowtie1): Update to 1.3.0.
---
gnu/packages/bioinformatics.scm | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cbf08c5dd2..ab149d6aad 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1654,14 +1654,14 @@ gapped, local, and paired-end alignment modes.")
(define-public bowtie1
(package
(name "bowtie1")
- (version "1.2.3")
+ (version "1.3.0")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/bowtie-bio/bowtie/"
- version "/bowtie-src-x86_64.zip"))
+ version "/bowtie-" version "-src.zip"))
(sha256
(base32
- "0vmiqdhc9dzyfy9sh6vgi7k9xy2hiw8g87vbamnc6cgpm179zsa4"))
+ "11dbihdnrizc6qhx9xsw77w3q5ssx642alaqzvhxx32ak9glvq04"))
(modules '((guix build utils)))
(snippet
'(substitute* "Makefile"
@@ -1672,7 +1672,7 @@ gapped, local, and paired-end alignment modes.")
(arguments
'(#:tests? #f ; no "check" target
#:make-flags
- (list "all"
+ (list "CC=gcc" "all"
(string-append "prefix=" (assoc-ref %outputs "out")))
#:phases
(modify-phases %standard-phases
--
2.30.0
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Ricardo Wurmus <rekado <at> elephly.net>
:
You have taken responsibility.
(Thu, 11 Feb 2021 21:40:02 GMT)
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Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
:
bug acknowledged by developer.
(Thu, 11 Feb 2021 21:40:02 GMT)
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Message #10 received at 46448-done <at> debbugs.gnu.org (full text, mbox):
Ricardo Wurmus <rekado <at> elephly.net> writes:
> Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:
>
>> * gnu/packages/bioinformatics.scm (bowtie1): Update to 1.3.0.
>
> Pushed with commit 160e4a95e7 with a slightly changed commit message to
> mention the change to the “arguments” field.
>
> Thanks!
--
Ricardo
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
to
internal_control <at> debbugs.gnu.org
.
(Fri, 12 Mar 2021 12:24:06 GMT)
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This bug report was last modified 3 years and 43 days ago.
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