GNU bug report logs -
#46869
[PATCH] gnu: hmmer: Update to 3.3.2.
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Reported by: Tim Howes <timhowes <at> lavabit.com>
Date: Tue, 2 Mar 2021 05:46:01 UTC
Severity: normal
Tags: patch
Done: Efraim Flashner <efraim <at> flashner.co.il>
Bug is archived. No further changes may be made.
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guix-patches <at> gnu.org
:
bug#46869
; Package
guix-patches
.
(Tue, 02 Mar 2021 05:46:01 GMT)
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Acknowledgement sent
to
Tim Howes <timhowes <at> lavabit.com>
:
New bug report received and forwarded. Copy sent to
guix-patches <at> gnu.org
.
(Tue, 02 Mar 2021 05:46:01 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/bioinformatics.scm (hmmer): Update to 3.3.2.
---
gnu/packages/bioinformatics.scm | 8 +++++---
1 file changed, 5 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 42476a4b2f..48dfe0287e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -19,6 +19,7 @@
;;; Copyright © 2020 Jakub Kądziołka <kuba <at> kadziolka.net>
;;; Copyright © 2020 Pierre Langlois <pierre.langlois <at> gmx.com>
;;; Copyright © 2020 Bonface Munyoki Kilyungi <bonfacemunyoki <at> gmail.com>
+;;; Copyright © 2021 Tim Howes <timhowes <at> lavabit.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -3874,7 +3875,7 @@ indexing scheme is called a @dfn{Hierarchical Graph FM index} (HGFM).")
(define-public hmmer
(package
(name "hmmer")
- (version "3.2.1")
+ (version "3.3.2")
(source
(origin
(method url-fetch)
@@ -3882,9 +3883,10 @@ indexing scheme is called a @dfn{Hierarchical Graph FM index} (HGFM).")
"http://eddylab.org/software/hmmer/hmmer-" version ".tar.gz"))
(sha256
(base32
- "171bivy6xhgjsz5nv53n81pc3frnwz29ylblawk2bv46szwjjqd5"))))
+ "0s9wf6n0qanbx8qs6igfl3vyjikwbrvh4d9d6mv54yp3xysykzlj"))))
(build-system gnu-build-system)
- (native-inputs `(("perl" ,perl)))
+ (native-inputs `(("perl" ,perl)
+ ("python" ,python))) ; for tests
(home-page "http://hmmer.org/")
(synopsis "Biosequence analysis using profile hidden Markov models")
(description
--
2.30.1
Reply sent
to
Efraim Flashner <efraim <at> flashner.co.il>
:
You have taken responsibility.
(Wed, 03 Mar 2021 08:15:01 GMT)
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Notification sent
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Tim Howes <timhowes <at> lavabit.com>
:
bug acknowledged by developer.
(Wed, 03 Mar 2021 08:15:01 GMT)
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Message #10 received at 46869-done <at> debbugs.gnu.org (full text, mbox):
[Message part 1 (text/plain, inline)]
Thanks! Patch pushed.
--
Efraim Flashner <efraim <at> flashner.co.il> אפרים פלשנר
GPG key = A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351
Confidentiality cannot be guaranteed on emails sent or received unencrypted
[signature.asc (application/pgp-signature, inline)]
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
to
internal_control <at> debbugs.gnu.org
.
(Wed, 31 Mar 2021 11:24:05 GMT)
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This bug report was last modified 3 years and 27 days ago.
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