GNU bug report logs - #47826
[PATCH] gnu: Update blast+ to 2.11.0.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Roel Janssen <roel <at> gnu.org>
To: guix-patches <at> gnu.org
Subject: [PATCH] gnu: Update blast+ to 2.11.0.
Date: Fri, 16 Apr 2021 13:22:59 +0200

[Message part 1 (text/plain, inline)]

Hi Guix,

Here's a patch to update blast+ to 2.11.0.

Kind regards,
Roel Janssen

[0001-gnu-Update-blast-to-2.11.0.patch (text/x-patch, attachment)]

Message #8 received at 47826 <at> debbugs.gnu.org (full text, mbox):

From: Leo Famulari <leo <at> famulari.name>
To: Roel Janssen <roel <at> gnu.org>
Cc: 47826 <at> debbugs.gnu.org
Subject: Re: [bug#47826] [PATCH] gnu: Update blast+ to 2.11.0.
Date: Fri, 16 Apr 2021 12:37:18 -0400

On Fri, Apr 16, 2021 at 01:22:59PM +0200, Roel Janssen wrote:
> Hi Guix,
> 
> Here's a patch to update blast+ to 2.11.0.
> 
> Kind regards,
> Roel Janssen
> 

> From 92d8f8602a285fc3ed61656c314a697cd87ae4f4 Mon Sep 17 00:00:00 2001
> From: Roel Janssen <roel <at> gnu.org>
> Date: Fri, 16 Apr 2021 13:20:53 +0200
> Subject: [PATCH] gnu: Update blast+ to 2.11.0.
> 
> * gnu/packages/bioinformatics.scm (blast+): Update to 2.11.0.

LGTM, assuming the packages the depend on it still build.

Message #11 received at 47826 <at> debbugs.gnu.org (full text, mbox):

From: Roel Janssen <roel <at> gnu.org>
To: Leo Famulari <leo <at> famulari.name>
Cc: 47826 <at> debbugs.gnu.org
Subject: Re: [bug#47826] [PATCH] gnu: Update blast+ to 2.11.0.
Date: Fri, 16 Apr 2021 20:14:27 +0200

Hi Leo,

On Fri, 2021-04-16 at 12:37 -0400, Leo Famulari wrote:
> On Fri, Apr 16, 2021 at 01:22:59PM +0200, Roel Janssen wrote:
> > Hi Guix,
> > 
> > Here's a patch to update blast+ to 2.11.0.
> > 
> > Kind regards,
> > Roel Janssen
> > 
> 
> > From 92d8f8602a285fc3ed61656c314a697cd87ae4f4 Mon Sep 17 00:00:00
> > 2001
> > From: Roel Janssen <roel <at> gnu.org>
> > Date: Fri, 16 Apr 2021 13:20:53 +0200
> > Subject: [PATCH] gnu: Update blast+ to 2.11.0.
> > 
> > * gnu/packages/bioinformatics.scm (blast+): Update to 2.11.0.
> 
> LGTM, assuming the packages the depend on it still build.
> 

Let's see if I got this right:
$ ./pre-inst-env guix refresh --list-dependent blast+
/home/roel/Programming/guix/gnu/packages/bioinformatics.go
Building the following 2 packages would ensure 2 dependent packages are
rebuilt: roary <at> 3.12.0 proteinortho <at> 6.0.14

So I built roary and proteinortho with the blast+ patch applied, and
both build fine.

Can I conclude from this that packages depending on blast+ still build
fine?

Kind regards,
Roel Janssen

Message #14 received at 47826 <at> debbugs.gnu.org (full text, mbox):

From: Leo Famulari <leo <at> famulari.name>
To: Roel Janssen <roel <at> gnu.org>
Cc: 47826 <at> debbugs.gnu.org
Subject: Re: [bug#47826] [PATCH] gnu: Update blast+ to 2.11.0.
Date: Fri, 16 Apr 2021 14:22:24 -0400

On Fri, Apr 16, 2021 at 08:14:27PM +0200, Roel Janssen wrote:
> Let's see if I got this right:
> $ ./pre-inst-env guix refresh --list-dependent blast+
> /home/roel/Programming/guix/gnu/packages/bioinformatics.go
> Building the following 2 packages would ensure 2 dependent packages are
> rebuilt: roary <at> 3.12.0 proteinortho <at> 6.0.14
> 
> So I built roary and proteinortho with the blast+ patch applied, and
> both build fine.
> 
> Can I conclude from this that packages depending on blast+ still build
> fine?

Yes, exactly! Thanks for testing and please push :)

Message #19 received at 47826-done <at> debbugs.gnu.org (full text, mbox):

From: Roel Janssen <roel <at> gnu.org>
To: Leo Famulari <leo <at> famulari.name>
Cc: 47826-done <at> debbugs.gnu.org
Subject: Re: [bug#47826] [PATCH] gnu: Update blast+ to 2.11.0.
Date: Fri, 16 Apr 2021 20:58:29 +0200

On Fri, 2021-04-16 at 14:22 -0400, Leo Famulari wrote:
> On Fri, Apr 16, 2021 at 08:14:27PM +0200, Roel Janssen wrote:
> > Let's see if I got this right:
> > $ ./pre-inst-env guix refresh --list-dependent blast+
> > /home/roel/Programming/guix/gnu/packages/bioinformatics.go
> > Building the following 2 packages would ensure 2 dependent packages
> > are
> > rebuilt: roary <at> 3.12.0 proteinortho <at> 6.0.14
> > 
> > So I built roary and proteinortho with the blast+ patch applied,
> > and
> > both build fine.
> > 
> > Can I conclude from this that packages depending on blast+ still
> > build
> > fine?
> 
> Yes, exactly! Thanks for testing and please push :)
> 

Thank you for your help!

I pushed this patch in c3926120ba5ea76f531541b7926ccb6739575e0e.

Kind regards,
Roel Janssen

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