GNU bug report logs - #48774
[PATCH] Fix build of python-scanpy

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Package: guix-patches;

Reported by: Roel Janssen <roel <at> gnu.org>

Date: Tue, 1 Jun 2021 08:35:01 UTC

Severity: normal

Tags: patch

Done: Roel Janssen <roel <at> gnu.org>

Bug is archived. No further changes may be made.

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Report forwarded to guix-patches <at> gnu.org:
bug#48774; Package guix-patches. (Tue, 01 Jun 2021 08:35:01 GMT) Full text and rfc822 format available.

Acknowledgement sent to Roel Janssen <roel <at> gnu.org>:
New bug report received and forwarded. Copy sent to guix-patches <at> gnu.org. (Tue, 01 Jun 2021 08:35:01 GMT) Full text and rfc822 format available.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Roel Janssen <roel <at> gnu.org>
To: guix-patches <at> gnu.org
Subject: [PATCH] Fix build of python-scanpy
Date: Tue, 1 Jun 2021 10:33:34 +0200
[Message part 1 (text/plain, inline)]
Dear Guix,

The attached two patches update python-anndata and python-scanpy, which 
effectively fix the build for python-scanpy.

python-anndata switched to a PEP518 setup instead of the regular Python 
"setup.py" approach.  So with some help on IRC, I added custom phases 
inspired by the python-tinycss2 package.

Kind regards,
Roel Janssen

[0001-gnu-python-anndata-Update-to-0.7.6.patch (text/x-patch, attachment)]
[0002-gnu-python-scanpy-Update-to-1.7.2.patch (text/x-patch, attachment)]

Information forwarded to guix-patches <at> gnu.org:
bug#48774; Package guix-patches. (Fri, 04 Jun 2021 11:55:01 GMT) Full text and rfc822 format available.

Message #8 received at 48774 <at> debbugs.gnu.org (full text, mbox):

From: Mathieu Othacehe <othacehe <at> gnu.org>
To: Roel Janssen <roel <at> gnu.org>
Cc: 48774 <at> debbugs.gnu.org
Subject: Re: bug#48774: [PATCH] Fix build of python-scanpy
Date: Fri, 04 Jun 2021 13:54:29 +0200
Hello Roel,

> The attached two patches update python-anndata and python-scanpy, which
> effectively fix the build for python-scanpy.

Both patches look fine to me.

Thanks,

Mathieu




Reply sent to Roel Janssen <roel <at> gnu.org>:
You have taken responsibility. (Fri, 04 Jun 2021 21:59:02 GMT) Full text and rfc822 format available.

Notification sent to Roel Janssen <roel <at> gnu.org>:
bug acknowledged by developer. (Fri, 04 Jun 2021 21:59:02 GMT) Full text and rfc822 format available.

Message #13 received at 48774-done <at> debbugs.gnu.org (full text, mbox):

From: Roel Janssen <roel <at> gnu.org>
To: Mathieu Othacehe <othacehe <at> gnu.org>
Cc: 48774-done <at> debbugs.gnu.org
Subject: Re: bug#48774: [PATCH] Fix build of python-scanpy
Date: Fri, 04 Jun 2021 23:58:09 +0200
Hi Mathieu,

On Fri, 2021-06-04 at 13:54 +0200, Mathieu Othacehe wrote:
> 
> Hello Roel,
> 
> > The attached two patches update python-anndata and python-scanpy,
> > which
> > effectively fix the build for python-scanpy.
> 
> Both patches look fine to me.
> 

Thanks for looking at them!  I rebuilt python-scanpy with these patches
on the latest master, and pushed these patches.

Kind regards,
Roel Janssen





bug archived. Request was from Debbugs Internal Request <help-debbugs <at> gnu.org> to internal_control <at> debbugs.gnu.org. (Sat, 03 Jul 2021 11:24:07 GMT) Full text and rfc822 format available.

This bug report was last modified 2 years and 269 days ago.

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