GNU bug report logs - #49084
[PATCH 0/1] gnu: python-rpy2: Update to 3.4.5.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: BonfaceKilz <me <at> bonfacemunyoki.com>
To: guix-patches <at> gnu.org
Cc: BonfaceKilz <me <at> bonfacemunyoki.com>
Subject: [PATCH 0/1] gnu: python-rpy2: Update to 3.4.5.
Date: Fri, 18 Jun 2021 10:35:47 +0300

Hi all! Find a patch that updates python-rpy2 to 3.4.5. One major fix in this
patch is to fix an error caused by SIGPIPE, which when used in the context of
a flask application can be blocking. See:
https://github.com/rpy2/rpy2/issues/809

BonfaceKilz (1):
  gnu: python-rpy2: Update to 3.4.5.

 gnu/packages/statistics.scm | 22 +++-------------------
 1 file changed, 3 insertions(+), 19 deletions(-)

-- 
2.31.1

Message #8 received at 49084 <at> debbugs.gnu.org (full text, mbox):

From: BonfaceKilz <me <at> bonfacemunyoki.com>
To: 49084 <at> debbugs.gnu.org
Cc: BonfaceKilz <me <at> bonfacemunyoki.com>
Subject: [PATCH 1/1] gnu: python-rpy2: Update to 3.4.5.
Date: Fri, 18 Jun 2021 10:38:11 +0300

* gnu/packages/statistics.scm (python-rpy2): Update to 3.4.5
[source]: Remove the patches.
---
 gnu/packages/statistics.scm | 22 +++-------------------
 1 file changed, 3 insertions(+), 19 deletions(-)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 1292ac6898..e5c5313c60 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -12,6 +12,7 @@
 ;;; Copyright © 2017 Alex Kost <alezost <at> gmail.com>
 ;;; Copyright © 2018 Alex Branham <alex.branham <at> gmail.com>
 ;;; Copyright © 2020 Tim Howes <timhowes <at> lavabit.com>
+;;; Copyright © 2021 Bonface Munyoki Kilyungi <me <at> bonfacemunyoki.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -5731,31 +5732,14 @@ to any arbitrary string.  In this case, it is up to you to set valid values.")
 (define-public python-rpy2
   (package
     (name "python-rpy2")
-    (version "3.3.5")
+    (version "3.4.5")
     (source
       (origin
         (method url-fetch)
         (uri (pypi-uri "rpy2" version))
         (sha256
          (base32
-          "1bs36rds5fq8821l5q85q2b25161rs9ppw5c26x0hjwj487gpcfj"))
-        ;; These patches should be removed with the next release.
-        (patches
-          (list
-            (origin
-              (method url-fetch)
-              (uri "https://github.com/rpy2/rpy2/commit/04c57598f00145d868ea8da31ac1b1e7c49f7570.patch")
-              (file-name "python-rpy2-fix-test-failure.patch")
-              (sha256
-               (base32
-                "1lqd3yxjfx1rxrybcmnapy0r6ambg9myrb98q4nlfhpxanwfdbbh")))
-            (origin
-              (method url-fetch)
-              (uri "https://github.com/rpy2/rpy2/commit/685f67d0a6b47ea80e718116a10755019446aef7.patch")
-              (file-name "python-rpy2-r-console-test-fix.patch")
-              (sha256
-               (base32
-                "18wpvfaa4c13d44cb4sw88c3c7403xdy5m8h82wfq8fjmcq3cmzn")))))))
+          "1cysswxr5glrdblyl2zsmywcj7xhxn3wmyihxinrz9gm8gmaacax"))))
     (build-system python-build-system)
     (arguments
      '(#:modules ((ice-9 ftw)
-- 
2.31.1

Message #13 received at 49084-done <at> debbugs.gnu.org (full text, mbox):

From: Ludovic Courtès <ludo <at> gnu.org>
To: BonfaceKilz <me <at> bonfacemunyoki.com>
Cc: 49084-done <at> debbugs.gnu.org
Subject: Re: bug#49084: [PATCH 0/1] gnu: python-rpy2: Update to 3.4.5.
Date: Sat, 26 Jun 2021 22:53:47 +0200

Hi Bonface,

BonfaceKilz <me <at> bonfacemunyoki.com> skribis:

> * gnu/packages/statistics.scm (python-rpy2): Update to 3.4.5
> [source]: Remove the patches.

Applied, thanks!

Ludo’.

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