GNU bug report logs - #49189
[PATCH 0/9] Remove broken Python 2 packages

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: zimoun <zimon.toutoune <at> gmail.com>
To: guix-patches <at> gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [PATCH 0/9] Remove broken Python 2 packages
Date: Wed, 23 Jun 2021 17:50:07 +0200

Hi,

Because Python 2 is EOL and these packages fail to build, there are removed.
Well, "guix refresh -l" is checked to ensure they are leaf packages

At the end of the series, "make as-derivation" successes, so everything seems
fine.

Cheers,
simon

zimoun (9):
  gnu: python2-larch: Remove package.
  gnu: python2-libadalang: Remove package.
  gnu: python2-mapnik: Remove package.
  gnu: python2-roca-detect: Remove package.
  gnu: python2-rpython: Remove package.
  gnu: python2-plotly: Remove package.
  gnu: python2-scripttest: Remove package.
  gnu: python2-sqlparse: Remove package.
  gnu: python2-wsgiproxy2: Remove package.

 gnu/packages/ada.scm           | 40 -------------------
 gnu/packages/check.scm         |  3 --
 gnu/packages/databases.scm     |  3 --
 gnu/packages/geo.scm           | 72 ----------------------------------
 gnu/packages/graph.scm         |  3 --
 gnu/packages/python-crypto.scm | 38 ------------------
 gnu/packages/python-web.scm    |  3 --
 gnu/packages/python-xyz.scm    | 67 -------------------------------
 8 files changed, 229 deletions(-)


base-commit: 3694c0d4fee0f7faf130ecd9386ea45932a19543
-- 
2.32.0

Message #8 received at 49189 <at> debbugs.gnu.org (full text, mbox):

From: zimoun <zimon.toutoune <at> gmail.com>
To: 49189 <at> debbugs.gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [PATCH 1/9] gnu: python2-larch: Remove package.
Date: Wed, 23 Jun 2021 17:52:22 +0200

* gnu/packages/python-xyz.scm (python2-larch): Remove variable.
---
 gnu/packages/python-xyz.scm | 44 -------------------------------------
 1 file changed, 44 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index ec4209108f..bcb0b0bdf4 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -17193,50 +17193,6 @@ matters when code is run in production mode.  The actual logging still
 happens using the @code{logging} library.")
     (license license:gpl3+)))
 
-(define-public python2-larch
-  (package
-    (name "python2-larch")
-    (version "1.20151025")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append
-             "http://git.liw.fi/cgi-bin/cgit/cgit.cgi/larch/snapshot/larch-"
-             version ".tar.gz"))
-       (patches (search-patches
-                 "python2-larch-coverage-4.0a6-compatibility.patch"))
-       (sha256
-        (base32
-         "1p4knkkavlqymgciz2wbcnfrdgdbafhg14maplnk4vbw0q8xs663"))))
-    (build-system python-build-system)
-    (arguments
-     `(#:python ,python-2
-       #:phases
-       (modify-phases %standard-phases
-         ;; check phase needs to be run before the build phase. If not,
-         ;; coverage-test-runner looks for tests for the built source files,
-         ;; and fails.
-         (delete 'check)
-         (add-before 'build 'check
-           (lambda _ (invoke "make" "check"))))))
-    (native-inputs
-     `(("cmdtest" ,cmdtest)
-       ("python2-coverage-test-runner" ,python2-coverage-test-runner)))
-    (propagated-inputs
-     `(("python2-tracing" ,python2-tracing)))
-    (home-page "https://liw.fi/larch/")
-    (synopsis "Python copy-on-write B-tree library")
-    (description "@code{python2-larch} is an implementation of
-particular kind of B-tree, based on research by Ohad Rodeh.  See
-@url{http://liw.fi/larch/ohad-btrees-shadowing-clones.pdf} for details
-on the data structure.
-
-The distinctive feature of this B-tree is that a node is never
-(conceptually) modified.  Instead, all updates are done by
-copy-on-write.  This makes it easy to clone a tree, and modify only the
-clone, while other processes access the original tree.")
-    (license license:gpl3+)))
-
 (define-public python-astroid
   (package
     (name "python-astroid")
-- 
2.32.0

Message #11 received at 49189 <at> debbugs.gnu.org (full text, mbox):

From: zimoun <zimon.toutoune <at> gmail.com>
To: 49189 <at> debbugs.gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [PATCH 2/9] gnu: python2-libadalang: Remove package.
Date: Wed, 23 Jun 2021 17:52:23 +0200

* gnu/packages/ada.scm (python2-libadalang): Remove variable.
---
 gnu/packages/ada.scm | 40 ----------------------------------------
 1 file changed, 40 deletions(-)

diff --git a/gnu/packages/ada.scm b/gnu/packages/ada.scm
index d24aa2b168..240e13f3ef 100644
--- a/gnu/packages/ada.scm
+++ b/gnu/packages/ada.scm
@@ -177,43 +177,3 @@ specification in our Python DSL and Langkit will generate for you an
 Ada library with bindings for the C and Python programming languages.")
       (home-page "https://github.com/AdaCore/langkit/")
       (license license:gpl3+))))   ; and gcc runtime library exception
-
-(define-public python2-libadalang
-  (let ((commit "9b205e9bacdd50a68117727332e16fbef5f6ac49")
-        (revision "0"))
-    (package
-      (name "python2-libadalang")
-      (version (git-version "0.0.0" revision commit))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                      (url "https://github.com/AdaCore/libadalang")
-                      (commit commit)))
-                (sha256
-                 (base32
-                  "06hsnzj2syqpq2yhg1bb0zil7ydbyqkdmkjbf8j9b5sdgkyh5xrp"))
-                (file-name (string-append name "-" version "-checkout"))))
-      (build-system python-build-system)
-      (native-inputs
-       `(("python2-langkit" ,python2-langkit)
-         ("python2-quex" ,python2-quex-0.67.3)))
-      (arguments
-       `(#:python ,python-2
-         #:phases
-         (modify-phases %standard-phases
-           (replace 'build
-             (lambda _
-               (invoke "python2" "ada/manage.py" "generate")
-               (invoke "python2" "ada/manage.py" "build")))
-           (replace 'check
-             (lambda _
-               (invoke "python2" "ada/manage.py" "test")))
-           (replace 'install
-             (lambda* (#:key outputs #:allow-other-keys)
-               (let* ((out (assoc-ref outputs "out")))
-                 (invoke "python2" "ada/manage.py" "install" out)))))))
-      (synopsis "Semantic Analysis for Ada in Python")
-      (description "@code{libadalang} provides a high-performance semantic
-engine for the Ada programming language.")
-      (home-page "https://github.com/AdaCore/libadalang")
-      (license license:gpl3)))) ; and gcc runtime gcc lib exception
-- 
2.32.0

Message #14 received at 49189 <at> debbugs.gnu.org (full text, mbox):

From: zimoun <zimon.toutoune <at> gmail.com>
To: 49189 <at> debbugs.gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [PATCH 3/9] gnu: python2-mapnik: Remove package.
Date: Wed, 23 Jun 2021 17:52:24 +0200

* gnu/packages/geo.scm (python2-mapnik): Remove variable.
---
 gnu/packages/geo.scm | 72 --------------------------------------------
 1 file changed, 72 deletions(-)

diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index 546be33e55..30756ac4d6 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -639,78 +639,6 @@ development.")
                    ;; deps/agg
                    (license:non-copyleft "file://deps/agg/copying")))))
 
-(define-public python2-mapnik
-  (package
-    (name "python2-mapnik")
-    (version "3.0.16")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "https://github.com/mapnik/python-mapnik/archive/v"
-                           version ".tar.gz"))
-       (file-name (string-append name "-" version ".tar.gz"))
-       (sha256
-        (base32
-         "0w7wg72gnwmbjani9sqk42p2jwqkrl9hsdkawahni5m05xsifcb4"))))
-    (build-system python-build-system)
-    (inputs
-     `(("boost" ,boost)
-       ("harfbuzz" ,harfbuzz)
-       ("icu4c" ,icu4c)
-       ("libjpeg-turbo" ,libjpeg-turbo)
-       ("libpng" ,libpng)
-       ("libtiff" ,libtiff)
-       ("libwebp" ,libwebp)
-       ("mapnik" ,mapnik)
-       ("proj.4" ,proj.4)
-       ("python2-pycairo" ,python2-pycairo)))
-    (native-inputs
-     (let ((test-data-input
-            (lambda (repository version hash)
-              (origin
-                (method url-fetch)
-                (uri (string-append "https://github.com/mapnik/" repository
-                                    "/archive/v" version ".tar.gz"))
-                (file-name (string-append "python-mapnik-" repository
-                                          "-" version ".tar.gz"))
-                (sha256 (base32 hash))))))
-       `(("python2-nose" ,python2-nose)
-         ;; Test data is released as separate tarballs
-         ("test-data"
-          ,(test-data-input "test-data" "3.0.18"
-                            "10cvgn5gxn8ldrszj24zr1vzm5w76kqk4s7bl2zzp5yvkhh8lj1n"))
-         ("test-data-visual"
-          ,(test-data-input "test-data-visual" "3.0.18"
-                            "1cb9ghy8sis0w5fkp0dvwxdqqx44rhs9a9w8g9r9i7md1c40r80i")))))
-    (arguments
-     `(#:python ,python-2 ; Python 3 support is incomplete, and the build fails
-       #:phases
-       (modify-phases %standard-phases
-         ;; Unpack test data into the source tree
-         (add-after 'unpack 'unpack-submodules
-           (lambda* (#:key inputs #:allow-other-keys)
-             (let ((unpack (lambda (source target)
-                             (with-directory-excursion target
-                               (invoke "tar" "xvf" (assoc-ref inputs source)
-                                       "--strip-components=1")))))
-               (unpack "test-data" "test/data")
-               (unpack "test-data-visual" "test/data-visual"))))
-         ;; Skip failing tests
-         (add-after 'unpack 'skip-tests
-           (lambda _
-             (let ((skipped-tests (list "test_vrt_referring_to_missing_files"
-                                        "test_unicode_regex_replace"
-                                        "test_proj_antimeridian_bbox"
-                                        "test_render_with_scale_factor")))
-               (substitute* "setup.cfg"
-                 (("\\[nosetests\\]" all)
-                  (string-append all "\nexclude=^("
-                                 (string-join skipped-tests "|") ")$")))))))))
-    (home-page "https://github.com/mapnik/python-mapnik")
-    (synopsis "Python bindings for Mapnik")
-    (description "This package provides Python bindings for Mapnik.")
-    (license license:lgpl2.1+)))
-
 (define-public spatialite-gui
   (package
     (name "spatialite-gui")
-- 
2.32.0

Message #17 received at 49189 <at> debbugs.gnu.org (full text, mbox):

From: zimoun <zimon.toutoune <at> gmail.com>
To: 49189 <at> debbugs.gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [PATCH 4/9] gnu: python2-roca-detect: Remove package.
Date: Wed, 23 Jun 2021 17:52:25 +0200

* gnu/packages/python-crypto.scm (python2-roca-detect): Remove variable.
---
 gnu/packages/python-crypto.scm | 38 ----------------------------------
 1 file changed, 38 deletions(-)

diff --git a/gnu/packages/python-crypto.scm b/gnu/packages/python-crypto.scm
index 733a87cd2f..278657c57a 100644
--- a/gnu/packages/python-crypto.scm
+++ b/gnu/packages/python-crypto.scm
@@ -857,44 +857,6 @@ of improving usability, security and speed.")
 @end itemize\n")
     (license license:bsd-3)))
 
-(define-public python2-roca-detect
-  (package
-    (name "python2-roca-detect")
-    (version "1.0.8")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (pypi-uri "roca-detect" version))
-       (sha256
-        (base32
-         "1di4akyw2lf5r8zfwvyhkilz8jv8g4b66rgaqwfabmjwma6gnw27"))))
-    (build-system python-build-system)
-    (native-inputs
-     ;; TODO: apk_parse_ph4, pyjks
-     `(("python2-dateutil" ,python2-dateutil)
-       ("python2-six" ,python2-six)
-       ("python2-cryptography" ,python2-cryptography)
-       ("python2-future" ,python2-future)
-       ("python2-coloredlogs" ,python2-coloredlogs)
-       ("python2-pgpdump" ,python2-pgpdump)))
-    (arguments
-     `(;; Basic testing routine is quite simple and works with Py3
-       ;; but the rest of the code that processes the different
-       ;; key formats and extracts the modulus for inspection is
-       ;; not yet fully py3 ready.
-       #:python ,python-2))
-    (home-page "https://github.com/crocs-muni/roca")
-    (synopsis "ROCA detection tool")
-    (description
-     "This tool is related to the paper entitled @i{Return of the
-Coppersmith’s Attack: Practical Factorization of Widely Used RSA Moduli}.  It
-enables you to test public RSA keys for a presence of the described
-vulnerability.  Currently the tool supports the following key formats: X.509
-Certificate (DER encoded, PEM encoded), RSA PEM (encoded private key, public
-key), SSH public key, ASC-encoded OpenPGP key, APK Android application, LDIFF
-file, and more.")
-    (license license:gpl3)))
-
 (define-public python-blurhash
   (package
     (name "python-blurhash")
-- 
2.32.0

Message #20 received at 49189 <at> debbugs.gnu.org (full text, mbox):

From: zimoun <zimon.toutoune <at> gmail.com>
To: 49189 <at> debbugs.gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [PATCH 5/9] gnu: python2-rpython: Remove package.
Date: Wed, 23 Jun 2021 17:52:26 +0200

* gnu/packages/python-xyz.scm (python2-rpython): Remove variable.
---
 gnu/packages/python-xyz.scm | 23 -----------------------
 1 file changed, 23 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index bcb0b0bdf4..54e9c6f2bd 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -4910,29 +4910,6 @@ writing C extensions for Python as easy as Python itself.")
                     ""))
                  #t)))))))))
 
-;; The RPython toolchain currently does not support Python 3.
-(define-public python2-rpython
-  (package
-    (name "python2-rpython")
-    (version "0.2.1")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (pypi-uri "rpython" version))
-       (sha256
-        (base32
-         "02z9cvxf0y41dcvwnvf2zn0albhhw1drvjjbq27m6i1piw1k6fc0"))))
-    (build-system python-build-system)
-    (arguments `(#:python ,python-2))
-    (native-inputs
-     `(("python2-pytest" ,python2-pytest))) ; needed for running tests
-    (home-page "https://rpython.readthedocs.org")
-    (synopsis "Framework for implementing interpreters and virtual machines")
-    (description "RPython is a translation and support framework for
-producing implementations of dynamic languages, emphasizing a clean separation
-between language specification and implementation aspects.")
-    (license license:expat)))
-
 ;; NOTE: when upgrading numpy please make sure that python-pandas and
 ;; python-scipy still build, as these three packages are often used together.
 (define-public python-numpy
-- 
2.32.0

Message #23 received at 49189 <at> debbugs.gnu.org (full text, mbox):

From: zimoun <zimon.toutoune <at> gmail.com>
To: 49189 <at> debbugs.gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [PATCH 6/9] gnu: python2-plotly: Remove package.
Date: Wed, 23 Jun 2021 17:52:27 +0200

* gnu/packages/graph.scm (python2-plotly): Remove variable.
---
 gnu/packages/graph.scm | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index 552a8a7848..42bd37a07a 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -232,9 +232,6 @@ subplots, multiple-axes, polar charts, and bubble charts. ")
     (arguments
      '(#:tests? #f)))) ; The tests are not distributed in the release
 
-(define-public python2-plotly
-  (package-with-python2 python-plotly-2.4.1))
-
 (define-public python-louvain
   (package
     (name "python-louvain")
-- 
2.32.0

Message #26 received at 49189 <at> debbugs.gnu.org (full text, mbox):

From: zimoun <zimon.toutoune <at> gmail.com>
To: 49189 <at> debbugs.gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [PATCH 7/9] gnu: python2-scripttest: Remove package.
Date: Wed, 23 Jun 2021 17:52:28 +0200

* gnu/packages/check.scm (python2-scripttest): Remove variable.
---
 gnu/packages/check.scm | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 7b20d863e6..658905a7f5 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -1391,9 +1391,6 @@ interactive command-line applications.  With it you can run a script in a
 subprocess and see the output as well as any file modifications.")
     (license license:expat)))
 
-(define-public python2-scripttest
-  (package-with-python2 python-scripttest))
-
 (define-public python-testtools-bootstrap
   (package
     (name "python-testtools-bootstrap")
-- 
2.32.0

Message #29 received at 49189 <at> debbugs.gnu.org (full text, mbox):

From: zimoun <zimon.toutoune <at> gmail.com>
To: 49189 <at> debbugs.gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [PATCH 8/9] gnu: python2-sqlparse: Remove package.
Date: Wed, 23 Jun 2021 17:52:29 +0200

* gnu/packages/databases.scm (python2-sqlparse): Remove variable.
---
 gnu/packages/databases.scm | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index e963789695..0fcac6a15a 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -3605,9 +3605,6 @@ is designed to have a low barrier to entry.")
 provides support for parsing, splitting and formatting SQL statements.")
     (license license:bsd-3)))
 
-(define-public python2-sqlparse
-  (package-with-python2 python-sqlparse))
-
 (define-public python-sql
   (package
     (name "python-sql")
-- 
2.32.0

Message #32 received at 49189 <at> debbugs.gnu.org (full text, mbox):

From: zimoun <zimon.toutoune <at> gmail.com>
To: 49189 <at> debbugs.gnu.org
Cc: zimoun <zimon.toutoune <at> gmail.com>
Subject: [PATCH 9/9] gnu: python2-wsgiproxy2: Remove package.
Date: Wed, 23 Jun 2021 17:52:30 +0200

* gnu/packages/python-web.scm (python2-wsgiproxy2): Remove variable.
---
 gnu/packages/python-web.scm | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index d0a4ee9c16..5cddd37d5d 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -2882,9 +2882,6 @@ It also includes code to sign requests and pass private data,
 and to spawn subprocesses to handle requests.")
     (license license:expat)))
 
-(define-public python2-wsgiproxy2
- (package-with-python2 python-wsgiproxy2))
-
 (define-public python-pastedeploy
   (package
     (name "python-pastedeploy")
-- 
2.32.0

Message #35 received at 49189 <at> debbugs.gnu.org (full text, mbox):

From: Ludovic Courtès <ludo <at> gnu.org>
To: zimoun <zimon.toutoune <at> gmail.com>
Cc: 49189 <at> debbugs.gnu.org
Subject: Re: bug#49189: [PATCH 0/9] Remove broken Python 2 packages
Date: Thu, 24 Jun 2021 23:07:08 +0200

Hi!

zimoun <zimon.toutoune <at> gmail.com> skribis:

>   gnu: python2-larch: Remove package.
>   gnu: python2-libadalang: Remove package.
>   gnu: python2-mapnik: Remove package.
>   gnu: python2-roca-detect: Remove package.
>   gnu: python2-rpython: Remove package.
>   gnu: python2-plotly: Remove package.
>   gnu: python2-scripttest: Remove package.
>   gnu: python2-sqlparse: Remove package.
>   gnu: python2-wsgiproxy2: Remove package.

LGTM.  I’ll apply it soonish if there are no objections.

Thanks,
Ludo’.

Message #40 received at 49189-done <at> debbugs.gnu.org (full text, mbox):

From: Ludovic Courtès <ludo <at> gnu.org>
To: zimoun <zimon.toutoune <at> gmail.com>
Cc: 49189-done <at> debbugs.gnu.org
Subject: Re: bug#49189: [PATCH 0/9] Remove broken Python 2 packages
Date: Tue, 29 Jun 2021 12:39:03 +0200

Hi,

zimoun <zimon.toutoune <at> gmail.com> skribis:

>   gnu: python2-larch: Remove package.
>   gnu: python2-libadalang: Remove package.
>   gnu: python2-mapnik: Remove package.
>   gnu: python2-roca-detect: Remove package.
>   gnu: python2-rpython: Remove package.
>   gnu: python2-plotly: Remove package.
>   gnu: python2-scripttest: Remove package.
>   gnu: python2-sqlparse: Remove package.
>   gnu: python2-wsgiproxy2: Remove package.

Pushed, thanks!

Ludo’.

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