GNU logs - #49207, boring messages

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Subject: [bug#49207] gnu: Add python-iris. (scitools)
Resent-From: Vinicius Monego <monego@HIDDEN>
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From: Vinicius Monego <monego@HIDDEN>
Date: Thu, 24 Jun 2021 12:39:15 +0000
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To: Vinicius Monego <monego@HIDDEN>
Subject: bug#49207: Acknowledgement (gnu: Add python-iris. (scitools))
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Message sent to guix-patches@HIDDEN:

Subject: [bug#49207] [PATCH 0/6] gnu: Add python-iris (scitools).
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Resending with send-email for convenience, without changes.

Vinicius Monego (6):
  gnu: Add python-imagehash.
  gnu: Add python-xxhash.
  gnu: Add python-antlr4.
  gnu: Add python-cf-units.
  gnu: Add python-pyke.
  gnu: Add python-iris.

 gnu/packages/geo.scm        | 114 ++++++++++++++++++++++++++++++++++
 gnu/packages/python-xyz.scm | 119 ++++++++++++++++++++++++++++++++++++
 2 files changed, 233 insertions(+)

-- 
2.30.2

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Subject: [bug#49207] [PATCH 1/6] gnu: Add python-imagehash.
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* gnu/packages/python-xyz.scm (python-imagehash): New variable.
---
 gnu/packages/python-xyz.scm | 41 +++++++++++++++++++++++++++++++++++++
 1 file changed, 41 insertions(+)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index d8c3fbec07..eef180b720 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -12995,6 +12995,47 @@ The API is as much as possible the similar to jQuery.  pyquery uses lxml for
 fast xml and html manipulation.")
     (license license:bsd-3)))

+(define-public python-imagehash
+  (package
+    (name "python-imagehash")
+    (version "4.2.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "ImageHash" version))
+       (sha256
+        (base32 "0kgiksjggw2warfz5d04fr3iph47vwxcb8jrlj41ljkhrc3ahsd9"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (replace 'check
+           (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+             (when tests?
+               (add-installed-pythonpath inputs outputs)
+               (invoke "pytest")))))))
+    (native-inputs
+     `(("python-pytest" ,python-pytest)))
+    (propagated-inputs
+     `(("python-numpy" ,python-numpy)
+       ("python-pillow" ,python-pillow)
+       ("python-pywavelets" ,python-pywavelets)
+       ("python-scipy" ,python-scipy)
+       ("python-six" ,python-six)))
+    (home-page "https://github.com/JohannesBuchner/imagehash")
+    (synopsis "Image hashing library")
+    (description "ImageHash is an Image hashing library.  It supports:
+
+@itemize
+@item Average hashing
+@item Perceptual hashing
+@item Difference hashing
+@item Wavelet hashing
+@item HSV color hashing (colorhash)
+@item Crop-resistant hashing
+@end itemize")
+    (license license:bsd-2)))
+
 (define-public python-anyjson
   (package
     (name "python-anyjson")
-- 
2.30.2

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* gnu/packages/python-xyz.scm (python-xxhash): New variable.
---
 gnu/packages/python-xyz.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index eef180b720..2b4ce0cba3 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -136,6 +136,7 @@
   #:use-module (gnu packages crypto)
   #:use-module (gnu packages databases)
   #:use-module (gnu packages dbm)
+  #:use-module (gnu packages digest)
   #:use-module (gnu packages djvu)
   #:use-module (gnu packages docker)
   #:use-module (gnu packages enchant)
@@ -13036,6 +13037,31 @@ fast xml and html manipulation.")
 @end itemize")
     (license license:bsd-2)))
 
+(define-public python-xxhash
+  (package
+    (name "python-xxhash")
+    (version "2.0.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "xxhash" version))
+       (sha256
+        (base32 "0jbvz19acznq00544gcsjg05fkvrmwbnwdfgrvwss3i1ys6avgmp"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'use-system-xxhash
+           (lambda _
+             (setenv "XXHASH_LINK_SO" "1"))))))
+    (inputs
+     `(("xxhash" ,xxhash)))
+    (home-page "https://github.com/ifduyue/python-xxhash")
+    (synopsis "Python binding for xxHash")
+    (description "This package provides a Python interface binding for the
+xxHash non-cryptographic hash algorithm.")
+    (license license:bsd-2)))
+
 (define-public python-anyjson
   (package
     (name "python-anyjson")
-- 
2.30.2

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* gnu/packages/python-xyz.scm (python-antlr4): New variable.
---
 gnu/packages/python-xyz.scm | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 2b4ce0cba3..61b1b7d29c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -13062,6 +13062,25 @@ fast xml and html manipulation.")
 xxHash non-cryptographic hash algorithm.")
     (license license:bsd-2)))
 
+(define-public python-antlr4
+  (package
+    (name "python-antlr4")
+    (version "4.7.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "antlr4-python3-runtime" version))
+       (sha256
+        (base32 "02xm7ccsf51vh4xsnhlg6pvchm1x3ckgv9kwm222w5drizndr30n"))))
+    (arguments
+     `(#:tests? #f)) ; there are no tests
+    (build-system python-build-system)
+    (home-page "https://www.antlr.org")
+    (synopsis "ANTLR runtime for Python")
+    (description
+     "This package provides a ANTLR runtime for Python.")
+    (license license:bsd-3)))
+
 (define-public python-anyjson
   (package
     (name "python-anyjson")
-- 
2.30.2

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* gnu/packages/geo.scm (python-cf-units): New variable.
---
 gnu/packages/geo.scm | 47 ++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 47 insertions(+)

diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index 37be78edbf..314165062c 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -58,6 +58,7 @@
   #:use-module (gnu packages bash)
   #:use-module (gnu packages bison)
   #:use-module (gnu packages boost)
+  #:use-module (gnu packages c)
   #:use-module (gnu packages check)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages curl)
@@ -898,6 +899,52 @@ Shapely capabilities
 @end itemize")
     (license license:lgpl3+)))
 
+(define-public python-cf-units
+  (package
+    (name "python-cf-units")
+    (version "2.1.5")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "cf-units" version))
+       (sha256
+        (base32 "0cswphn1cw0qyzglcn4xinr3pfhvbsdyll4hnb702fsfxv9q2cyl"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'disable-doctest
+           (lambda _
+             ;; Two doctests fail.
+             (substitute* "setup.cfg" (("--doctest-modules") ""))))
+         (replace 'check
+           (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+             (when tests?
+               (add-installed-pythonpath inputs outputs)
+               (invoke "pytest" "--pyargs" "cf_units" "-ra"
+                       ;; This test failed.
+                       "-k" "not test_masked_ndarray")))))))
+    (native-inputs
+     `(("python-coveralls" ,python-coveralls)
+       ("python-cython" ,python-cython)
+       ("python-jinja2" ,python-jinja2)
+       ("python-pep8" ,python-pep8)
+       ("python-pytest" ,python-pytest)
+       ("python-pytest-cov" ,python-pytest-cov)
+       ("python-pytest-runner" ,python-pytest-runner)))
+    (inputs
+     `(("udunits" ,udunits)))
+    (propagated-inputs
+     `(("python-antlr4" ,python-antlr4)
+       ("python-cftime" ,python-cftime)
+       ("python-numpy" ,python-numpy)
+       ("python-six" ,python-six)))
+    (home-page "https://github.com/SciTools/cf-units")
+    (synopsis "Units of measure as required by the CF metadata conventions")
+    (description "This package provides units of measure as required by the
+Climate and Forecast (CF) metadata conventions.")
+    (license license:lgpl3)))
+
 (define-public postgis
   (package
     (name "postgis")
-- 
2.30.2

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Date: Fri, 23 Jul 2021 23:25:28 +0000
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* gnu/packages/python-xyz.scm (python-pyke): New variable.
---
 gnu/packages/python-xyz.scm | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 61b1b7d29c..360650332e 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -6009,6 +6009,39 @@ operators such as union, intersection, and difference.")
 search in Python.")
     (license license:lgpl3+)))
 
+(define-public python-pyke
+  (package
+    (name "python-pyke")
+    (version "1.1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "scitools-pyke" version))
+       (sha256
+        (base32 "0q7nxd0gw135922ck155w2nj2vf47k7cgzdqipxlyrgq6q3lkinl"))))
+    (build-system python-build-system)
+    ;; FIXME: two tests are failing with:
+    ;; "AttributeError: 'fc_tests' object has no attribute 'engine'.".
+    (arguments
+     `(#:tests? #f))
+    (home-page "https://sourceforge.net/projects/pyke/")
+    (synopsis "Python Knowledge Engine")
+    (description "Pyke is a Python Knowledge Engine and automatic Python
+program generator.  Both forward-chaining and backward-chaining rules (which
+may include Python code) are compiled into Python.  It can also automatically
+assemble Python programs out of Python functions which are attached to
+backward-chaining rules.
+
+Features:
+
+@itemize
+@item Automatic programming: generates Python programs.
+@item Forward and backward chaining.
+@item Multiple knowledge engines and rule bases.
+@item Rule-based inheritance.
+@end itemize")
+    (license license:expat)))
+
 (define-public python-wurlitzer
   (package
     (name "python-wurlitzer")
-- 
2.30.2

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* gnu/packages/geo.scm (python-iris): New variable.
---
 gnu/packages/geo.scm | 67 ++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 67 insertions(+)

diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index 314165062c..36c020e31d 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -92,6 +92,7 @@
   #:use-module (gnu packages protobuf)
   #:use-module (gnu packages pulseaudio)
   #:use-module (gnu packages python)
+  #:use-module (gnu packages python-build)
   #:use-module (gnu packages python-check)
   #:use-module (gnu packages python-science)
   #:use-module (gnu packages python-web)
@@ -945,6 +946,72 @@ Shapely capabilities
 Climate and Forecast (CF) metadata conventions.")
     (license license:lgpl3)))
 
+(define-public python-iris
+  (package
+    (name "python-iris")
+    (version "3.0.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "scitools-iris" version))
+       (sha256
+        (base32 "1zqicscnnfqpck960xdjng38qk0w0spmcysl89l3smagdsagzxkr"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'check 'pre-check
+           (lambda _
+             ;; Some tests require a writable home.
+             (setenv "HOME" "/tmp")
+             ;; Iris will check for "scitools-iris[test]" before running the
+             ;; tests.  The complete test set weighs 150MB.  Skip this check.
+             (substitute* "setup.py"
+               ((".*tests_require.*") ""))
+             ;; The tests below open external connections.
+             (substitute*
+                 "lib/iris/tests/integration/plot/test_vector_plots.py"
+               (("test_2d_plain_latlon") "_test_2d_plain_latlon")
+               (("test_2d_plain_latlon_on_polar_map")
+                "_test_2d_plain_latlon_on_polar_map")
+               (("test_2d_rotated_latlon") "_test_2d_rotated_latlon"))
+             (substitute*
+                 "lib/iris/tests/integration/plot/test_plot_2d_coords.py"
+               (("test_2d_coords_contour") "_test_2d_coords_contour"))
+             ;; This one fails with AssertionError.
+             (substitute* "lib/iris/tests/experimental/test_animate.py"
+               (("test_cube_animation") "_test_cube_animation"))
+             ;; Compile Pyke rules before running the tests.
+             (invoke "python" "setup.py" "pyke_rules"))))))
+    (propagated-inputs
+     `(("python-cartopy" ,python-cartopy)
+       ("python-cf-units" ,python-cf-units)
+       ("python-cftime" ,python-cftime)
+       ("python-dask" ,python-dask)
+       ("python-matplotlib" ,python-matplotlib)
+       ("python-netcdf4" ,python-netcdf4)
+       ("python-numpy" ,python-numpy)
+       ("python-scipy" ,python-scipy)
+       ("python-xxhash" ,python-xxhash)))
+    (native-inputs
+     `(("netcdf" ,netcdf)
+       ("python-black" ,python-black)
+       ("python-filelock" ,python-filelock)
+       ("python-imagehash" ,python-imagehash)
+       ("python-nose" ,python-nose)
+       ("python-pillow" ,python-pillow)
+       ("python-pyke" ,python-pyke)
+       ("python-requests" ,python-requests)
+       ("python-wheel" ,python-wheel)))
+    (home-page "https://github.com/SciTools/iris")
+    (synopsis "Library for analysing and visualising Earth science data")
+    (description "Iris is a Python library for analysing and visualising Earth
+science data.  It excels when working with multi-dimensional Earth Science
+data, where tabular representations become unwieldy and inefficient.  Iris
+implements a data model based on the CF conventions.")
+    ;; See iris/docs/src/copyright.rst.
+    (license license:lgpl3+)))
+
 (define-public postgis
   (package
     (name "postgis")
-- 
2.30.2

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# done with 5c131aff691fa1cb0fafe71b5f2795902ae056a7
close 55819

# control fail?
close 45449

# no longer relevant
close 33078

# tags
tags 62551 patch
tags 62503 patch
tags 62461 patch
tags 62443 patch
tags 62428 patch
tags 61226 patch
tags 59893 patch
tags 59852 patch
tags 49451 patch
tags 49207 patch
tags 44258 patch


quit

Last modified: Thu, 30 Mar 2023 23:15:01 UTC

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