GNU bug report logs - #49500
[PATCH] gnu: dealii: Update to 9.3.0 and clean up.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: "Paul A. Patience" <paul <at> apatience.com>
To: "guix-patches <at> gnu.org" <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: dealii: Update to 9.3.0 and clean up.
Date: Fri, 09 Jul 2021 20:27:41 +0000

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[0001-gnu-dealii-Update-to-9.3.0-and-clean-up.patch (text/x-patch, attachment)]

Message #8 received at submit <at> debbugs.gnu.org (full text, mbox):

From: "Paul A. Patience" <paul <at> apatience.com>
To: "guix-patches <at> gnu.org" <guix-patches <at> gnu.org>
Subject: Re: [PATCH] gnu: dealii: Update to 9.3.0 and clean up.
Date: Fri, 09 Jul 2021 22:53:30 +0000

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This revised patch removes perl and python from the inputs,
because if they were included it would have had to be in propagated
inputs because the scripts they are required for are not
executable.
Anyway, see the comment in the patch for more info.

Best regards,
Paul

[0001-gnu-dealii-Update-to-9.3.0-and-clean-up.patch (text/x-patch, attachment)]

Message #11 received at submit <at> debbugs.gnu.org (full text, mbox):

From: "Paul A. Patience" <paul <at> apatience.com>
To: "guix-patches <at> gnu.org" <guix-patches <at> gnu.org>
Subject: Re: [PATCH] gnu: dealii: Update to 9.3.0 and clean up.
Date: Wed, 14 Jul 2021 01:32:41 +0000

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deal.II 9.3.1 has been released in the meantime,
so update to that.

Best regards,
Paul

[0001-gnu-dealii-Update-to-9.3.1-and-clean-up.patch (text/x-patch, attachment)]

Message #16 received at 49500-done <at> debbugs.gnu.org (full text, mbox):

From: Ludovic Courtès <ludo <at> gnu.org>
To: "Paul A. Patience" <paul <at> apatience.com>
Cc: 49500-done <at> debbugs.gnu.org
Subject: Re: bug#49500: [PATCH] gnu: dealii: Update to 9.3.0 and clean up.
Date: Tue, 20 Jul 2021 22:38:38 +0200

Hi Paul,

"Paul A. Patience" <paul <at> apatience.com> skribis:

> From 3e4b62a5af1e71eb37474ab9f719e0b9a9cc66a0 Mon Sep 17 00:00:00 2001
> From: "Paul A. Patience" <paul <at> apatience.com>
> Date: Tue, 13 Jul 2021 21:29:51 -0400
> Subject: [PATCH] gnu: dealii: Update to 9.3.1 and clean up.
>
> The cleanup notably:
>
> * Builds and installs the documentation into a separate doc output (in
> the process moving around some files erroneously installed into the root
> directory); and
> * Removes unnecessary inputs and moves some inputs into
> propagated-inputs (the candidates of which were determined with a search
> for "include.*LIBNAME" in include/deal.II).
>
> * gnu/packages/maths.scm (dealii): Reword comments.
> [version]: Update to 9.3.1.
> [outputs]: New field including doc output.
> [native-inputs]: New field.
> [inputs]: Sort them. Remove p4est (deal.II interfaces with it only when
> MPI is enabled). Move boost, suitesparse and tbb to...
> [propagated-inputs]: ...here. New field including hdf5, which is
> actually supported in deal.II without MPI.
> [arguments]<#:tests?>: New argument. The tests were not being run before
> anyway.
> <#:configure-flags>[-DDEAL_II_COMPONENT_DOCUMENTATION]: New flag.
> [-DDEAL_II_DOCREADME_RELDIR]: New flag. Prevents the LICENSE.md,
> README.md, detailed.log and summary.log files from being installed in
> the root directory (though note that the logs are removed in the new
> remove-build-logs phase).
> [-DDEAL_II_DOCHTML_RELDIR]: New flag.
> [-DDEAL_II_COMPILE_EXAMPLES]: New flag.
> [-DDEAL_II_EXAMPLES_RELDIR]: New flag. Prevents the examples directory
> from being installed in the root directory.
> [-DCMAKE_POSITION_INDEPENDENT_CODE]: Remove flag. The issue has been
> resolved.
> <#:phases>{remove-build-logs}: New phase.
> [home-page]: Add trailing slash.
> (dealii-openmpi): Use package/inherit.
> [inputs]: Sort them. Remove mumps-metis-openmpi (deal.II no longer
> interfaces with MUMPS). Move hdf5-parallel-openmpi, openmpi,
> p4est-openmpi, petsc-openmpi and slepc-openmpi to...
> [propagated-inputs]: ...here. New field.
> [arguments]<#:configure-flags>: Rename cf variable to flags.
> <#:phases>{mpi-setup}: Remove phase which is unused because the tests
> are disabled.
> ---
>  gnu/packages/maths.scm | 95 +++++++++++++++++++++++++++---------------
>  1 file changed, 62 insertions(+), 33 deletions(-)

Impressive piece of work.

Pushed as 4a136a3b7fed201805f3ef3c8569abf0cbf8b014, thanks!

Ludo’.

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