Package: guix-patches;
Reported by: Efraim Flashner <efraim <at> flashner.co.il>
Date: Thu, 9 Sep 2021 18:20:02 UTC
Severity: normal
Tags: patch
Done: Efraim Flashner <efraim <at> flashner.co.il>
Bug is archived. No further changes may be made.
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guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Thu, 09 Sep 2021 18:20:02 GMT) Full text and rfc822 format available.Efraim Flashner <efraim <at> flashner.co.il>:guix-patches <at> gnu.org.
(Thu, 09 Sep 2021 18:20:02 GMT) Full text and rfc822 format available.Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
From: Efraim Flashner <efraim <at> flashner.co.il> To: guix-patches <at> gnu.org Cc: Efraim Flashner <efraim <at> flashner.co.il> Subject: [PATCH 0/5] Some julia packages Date: Thu, 9 Sep 2021 21:16:18 +0300
Here are some julia packages. I'm still working on julia-documenter with all the javascript it downloads at runtime, but these ones are ready. Efraim Flashner (5): gnu: Add julia-quadgk. gnu: Add julia-measurements. gnu: Add julia-mlstyle. gnu: Add julia-pycall. gnu: Add julia-ansicoloredprinters. gnu/packages/julia-xyz.scm | 177 ++++++++++++++++++++++++++++++++++++- 1 file changed, 176 insertions(+), 1 deletion(-) base-commit: bae57cc7d2917c4a67e9afb68ed61ad7117ea7ea -- 2.33.0
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Tue, 14 Sep 2021 17:39:02 GMT) Full text and rfc822 format available.Message #8 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: zimoun <zimon.toutoune <at> gmail.com> To: Efraim Flashner <efraim <at> flashner.co.il> Cc: 50490 <at> debbugs.gnu.org Subject: Re: [bug#50490] [PATCH 0/5] Some julia packages Date: Tue, 14 Sep 2021 19:38:22 +0200
Hi Efraim, Cool! On Thu, 9 Sept 2021 at 20:20, Efraim Flashner <efraim <at> flashner.co.il> wrote: > Here are some julia packages. I'm still working on julia-documenter with > all the javascript it downloads at runtime, but these ones are ready. > > Efraim Flashner (5): > gnu: Add julia-quadgk. > gnu: Add julia-measurements. > gnu: Add julia-mlstyle. > gnu: Add julia-pycall. > gnu: Add julia-ansicoloredprinters. Have you send this? Cheers, simon
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Tue, 14 Sep 2021 18:22:01 GMT) Full text and rfc822 format available.Message #11 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: Efraim Flashner <efraim <at> flashner.co.il> To: 50490 <at> debbugs.gnu.org Cc: Efraim Flashner <efraim <at> flashner.co.il> Subject: [PATCH 1/4] gnu: Add julia-libsass-jll. Date: Tue, 14 Sep 2021 21:19:24 +0300
* gnu/packages/julia-jll.scm (julia-libsass-jll): New variable.
---
gnu/packages/julia-jll.scm | 43 ++++++++++++++++++++++++++++++++++++++
1 file changed, 43 insertions(+)
diff --git a/gnu/packages/julia-jll.scm b/gnu/packages/julia-jll.scm
index d18971ad48..d3677d0a33 100644
--- a/gnu/packages/julia-jll.scm
+++ b/gnu/packages/julia-jll.scm
@@ -1064,6 +1064,49 @@ (define-public julia-libpng-jll
(description "This package provides a wrapper for the libpng library.")
(license license:expat)))
+(define-public julia-libsass-jll
+ (let ((commit "69bf10603aad0ebf1f6df088c5fd7c4a5d1eb0ca"))
+ (package
+ (name "julia-libsass-jll")
+ (version "3.5.5+0") ;tag not created upstream
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/JuliaBinaryWrappers/libsass_jll.jl")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1fb6rf422533bsmfslvc20ag1hr50bf9xaj32rvh7nv593sbiygn"))))
+ (build-system julia-build-system)
+ (arguments
+ `(#:tests? #f ; no runtests.jl
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'override-binary-path
+ (lambda* (#:key inputs #:allow-other-keys)
+ (map
+ (lambda (wrapper)
+ (substitute* wrapper
+ (("generate_wrapper_header.*")
+ (string-append
+ "generate_wrapper_header(\"libsass\", \""
+ (assoc-ref inputs "libsass") "\")\n"))))
+ ;; There's a Julia file for each platform, override them all
+ (find-files "src/wrappers/" "\\.jl$"))
+ #t)))))
+ (inputs
+ `(("libsass" ,libsass)))
+ (propagated-inputs
+ `(("julia-jllwrappers" ,julia-jllwrappers)))
+ (home-page "https://github.com/JuliaBinaryWrappers/libsass_jll.jl")
+ (synopsis "Julia wrapper for libsass")
+ (description "This package provides a wrapper for libsass. It is an
+autogenerated source package constructed using @code{BinaryBuilder.jl}. The
+originating @code{build_tarballs.jl} script can be found on the community
+build tree Yggdrasil.")
+ (license license:expat))))
+
(define-public julia-libtiff-jll
(package
(name "julia-libtiff-jll")
--
2.33.0
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Tue, 14 Sep 2021 18:25:02 GMT) Full text and rfc822 format available.Message #14 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: Efraim Flashner <efraim <at> flashner.co.il> To: 50490 <at> debbugs.gnu.org Cc: Efraim Flashner <efraim <at> flashner.co.il> Subject: [PATCH 2/4] gnu: Add julia-sass. Date: Tue, 14 Sep 2021 21:19:25 +0300
* gnu/packages/julia-xyz.scm (julia-sass): New variable.
---
gnu/packages/julia-xyz.scm | 22 ++++++++++++++++++++++
1 file changed, 22 insertions(+)
diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index a80964c2b0..2f953a33b7 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -3403,6 +3403,28 @@ (define-public julia-safetestsets
a loadable module.")
(license license:expat))))
+(define-public julia-sass
+ (package
+ (name "julia-sass")
+ (version "0.2.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/piever/Sass.jl")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0y7kkkj717h5cj659ssry89i5r64symr6pvhr6vv4qmaxrnjxj92"))))
+ (build-system julia-build-system)
+ (propagated-inputs
+ `(("julia-libsass-jll" ,julia-libsass-jll)))
+ (home-page "https://github.com/piever/Sass.jl")
+ (synopsis "Compile scss and sass file to css in Julia")
+ (description "This library provides a simple Julian API to use the
+@code{libsass} library to compile scss and sass files to css.")
+ (license license:expat)))
+
(define-public julia-scratch
(package
(name "julia-scratch")
--
2.33.0
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Tue, 14 Sep 2021 18:38:02 GMT) Full text and rfc822 format available.Message #17 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: Efraim Flashner <efraim <at> flashner.co.il> To: 50490 <at> debbugs.gnu.org Cc: Efraim Flashner <efraim <at> flashner.co.il> Subject: [PATCH 4/4] gnu: Add julia-documenter. Date: Tue, 14 Sep 2021 21:19:27 +0300
* gnu/packages/julia-xyz.scm (julia-documenter,
julia-documentermarkdown, julia-documentertools): New variables.
(julia-documenter-0.22): New hidden variable.
---
gnu/packages/julia-xyz.scm | 146 ++++++++++++++++++++++++++++++++++++-
1 file changed, 145 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 309687019d..e7e7680cca 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -26,7 +26,9 @@ (define-module (gnu packages julia-xyz)
#:use-module (guix git-download)
#:use-module (guix build-system julia)
#:use-module (gnu packages gcc)
- #:use-module (gnu packages julia-jll))
+ #:use-module (gnu packages julia-jll)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages version-control))
(define-public julia-abstractffts
(package
@@ -990,6 +992,148 @@ (define-public julia-docstringextensions
valuable enough at this time.")
(license license:expat)))
+;; By removing all the javascript and css downloads any HTML documentation
+;; produced by this package will not be very useful.
+(define-public julia-documenter
+ (package
+ (name "julia-documenter")
+ (version "0.27.6")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/JuliaDocs/Documenter.jl")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1y6rql7cxc7hfhc8rfq1mdmffp70sqzyh4vnnq93fziwrc8c8sbj"))))
+ (build-system julia-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'patch-source
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "src/Deps.jl"
+ (("pip install")
+ (string-append (assoc-ref inputs "python")
+ "/bin/pip install")))
+ #t))
+ (add-after 'unpack 'remove-javascript-downloads
+ (lambda _
+ (substitute* "src/Writers/HTMLWriter.jl"
+ (("cdnjs.cloudflare.com") "example.com"))
+ ;; Removing the javascript downloads causes these tests fail.
+ (substitute* "test/examples/tests.jl"
+ ((".*Main\\.examples_html_doc.*") "")
+ ((".*Main\\.examples_html_mathjax3_doc.*") ""))
+ #t)))))
+ (propagated-inputs
+ `(("julia-ansicoloredprinters" ,julia-ansicoloredprinters)
+ ("julia-docstringextensions" ,julia-docstringextensions)
+ ("julia-iocapture" ,julia-iocapture)
+ ("julia-json" ,julia-json)))
+ (inputs
+ `(("python" ,python-wrapper)))
+ (native-inputs
+ `(("git" ,git-minimal)
+ ("julia-documentermarkdown" ,julia-documentermarkdown)
+ ("julia-documentertools" ,julia-documentertools)))
+ (home-page "https://juliadocs.github.io/Documenter.jl")
+ (synopsis "Documentation generator for Julia")
+ (description "This package provides a documentation generator for Julia.")
+ (license license:expat)))
+
+(define-public julia-documenter-0.22
+ (package
+ (inherit julia-documenter)
+ (name "julia-documenter")
+ (version "0.22.6")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/JuliaDocs/Documenter.jl")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1z8b7267y7yn5nx8sjwkmc0ph97vmv42q52jg7s89ghqb9xx3wv5"))))
+ (arguments
+ `(#:tests? #f ; Some tests require network.
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'remove-javascript-downloads
+ (lambda _
+ ;; This isn't problematic because we only use
+ ;; this package for bootstrapping.
+ (substitute* '("assets/html/documenter.js"
+ "assets/html/search.js"
+ "src/Writers/HTMLWriter.jl")
+ (("cdnjs.cloudflare.com") "example.com"))
+ #t)))))
+ (propagated-inputs
+ `(("julia-docstringextensions" ,julia-docstringextensions)
+ ("julia-json" ,julia-json)))
+ (inputs `())
+ (native-inputs `())
+ (properties '((hidden? . #t)))))
+
+(define-public julia-documentermarkdown
+ (package
+ (name "julia-documentermarkdown")
+ (version "0.2.2")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0sx89hi5p2f8zi2rp5qrv06m270d90pxj5d2y5cxls1spax7wqx8"))))
+ (build-system julia-build-system)
+ (inputs
+ ;; We don't want to propagate the bootstrap version.
+ ;; Cycle with Documenter.jl in later versions.
+ `(("julia-documenter" ,julia-documenter-0.22)))
+ (home-page "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
+ (synopsis "Documenter's Markdown")
+ (description "This package enables the Markdown / MkDocs backend of
+@code{Documenter.jl}.")
+ (license license:expat)))
+
+(define-public julia-documentertools
+ (package
+ (name "julia-documentertools")
+ (version "0.1.13")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/JuliaDocs/DocumenterTools.jl")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "05p57p8xlkn42m1lv9gq4hl96vp7hpj19d51p828ai1rbpcpi3a6"))))
+ (build-system julia-build-system)
+ (arguments
+ `(#:tests? #f)) ; Tests require network.
+ (inputs
+ ;; We don't want to propagate the bootstrap version.
+ ;; Cycle with Documenter.jl in later versions.
+ `(("julia-documenter" ,julia-documenter-0.22)))
+ (propagated-inputs
+ `(("julia-docstringextensions" ,julia-docstringextensions)
+ ("julia-gumbo" ,julia-gumbo)
+ ("julia-sass" ,julia-sass)))
+ (native-inputs
+ `(("julia-example" ,julia-example)))
+ (home-page "https://github.com/JuliaDocs/DocumenterTools.jl")
+ (synopsis "Extra tools for setting up Documenter")
+ (description "This package contains utilities for setting up documentation
+generation with @code{Documenter.jl}.")
+ (license license:expat)))
+
(define-public julia-diffresults
(package
(name "julia-diffresults")
--
2.33.0
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Tue, 14 Sep 2021 18:38:02 GMT) Full text and rfc822 format available.Message #20 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: Efraim Flashner <efraim <at> flashner.co.il> To: 50490 <at> debbugs.gnu.org Cc: Efraim Flashner <efraim <at> flashner.co.il> Subject: [PATCH 3/4] gnu: Add julia-ansicoloredprinters. Date: Tue, 14 Sep 2021 21:19:26 +0300
* gnu/packages/julia-xyz.scm (julia-ansicoloredprinters): New variable.
---
gnu/packages/julia-xyz.scm | 20 ++++++++++++++++++++
1 file changed, 20 insertions(+)
diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 2f953a33b7..309687019d 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -98,6 +98,26 @@ (define-public julia-adapt
be GPU compatible without throwing away the wrapper.")
(license license:expat)))
+(define-public julia-ansicoloredprinters
+ (package
+ (name "julia-ansicoloredprinters")
+ (version "0.0.1")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0dp5agljr0g50s5gn0pr70wrz01ggck6pb40ay3l4szhswq7mqzf"))))
+ (build-system julia-build-system)
+ (home-page "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
+ (synopsis "ANSI escape code translator")
+ (description "@code{ANSIColoredPrinters.jl} converts a text qualified by
+ANSI escape codes to another format.")
+ (license license:expat)))
+
(define-public julia-aqua
(package
(name "julia-aqua")
--
2.33.0
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Wed, 22 Sep 2021 12:16:01 GMT) Full text and rfc822 format available.Message #23 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: Efraim Flashner <efraim <at> flashner.co.il> To: 50490 <at> debbugs.gnu.org Cc: Efraim Flashner <efraim <at> flashner.co.il> Subject: [PATCH 1/5] gnu: Add julia-quadgk. Date: Wed, 22 Sep 2021 15:13:16 +0300
* gnu/packages/julia-xyz.scm (julia-quadgk): New variable.
---
gnu/packages/julia-xyz.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index a80964c2b0..bd6a296463 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -2985,6 +2985,31 @@ everything from run time algorithm choice to code generation at compile time.")
human-readable format.")
(license license:expat)))
+(define-public julia-quadgk
+ (package
+ (name "julia-quadgk")
+ (version "2.4.1")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/JuliaMath/QuadGK.jl")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1hy0629yai6xflgxaflk9764lzr1lzhlghimxk1aqi212q9c6n33"))))
+ (build-system julia-build-system)
+ (propagated-inputs
+ `(("julia-datastructures" ,julia-datastructures)))
+ (home-page "https://github.com/JuliaMath/QuadGK.jl")
+ (synopsis "Adaptive 1d numerical Gauss–Kronrod integration in Julia")
+ (description "This package provides support for one-dimensional numerical
+integration in Julia using adaptive Gauss-Kronrod quadrature. The code was
+originally part of Base Julia. It supports integration of arbitrary numeric
+types, including arbitrary precision (@code{BigFloat}), and even integration of
+arbitrary normed vector spaces (e.g. matrix-valued integrands).")
+ (license license:expat)))
+
(define-public julia-quadmath
(package
(name "julia-quadmath")
--
2.33.0
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Wed, 22 Sep 2021 12:17:02 GMT) Full text and rfc822 format available.Message #26 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: Efraim Flashner <efraim <at> flashner.co.il> To: 50490 <at> debbugs.gnu.org Cc: Efraim Flashner <efraim <at> flashner.co.il> Subject: [PATCH 2/5] gnu: Add julia-measurements. Date: Wed, 22 Sep 2021 15:13:17 +0300
* gnu/packages/julia-xyz.scm (julia-measurements): New variable.
---
gnu/packages/julia-xyz.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index bd6a296463..222f9f129e 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -2433,6 +2433,37 @@ may include other factorizations such as the LQ factorization.")
TLS} and cryptography C library for Julia.")
(license license:expat)))
+(define-public julia-measurements
+ (package
+ (name "julia-measurements")
+ (version "2.6.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/JuliaPhysics/Measurements.jl")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "05p3f0gr4sv4maq8cix5fi8ldq0zagswqsd43xn6fhy046f936mz"))))
+ (build-system julia-build-system)
+ (propagated-inputs
+ `(("julia-calculus" ,julia-calculus)
+ ("julia-recipesbase" ,julia-recipesbase)
+ ("julia-requires" ,julia-requires)))
+ (native-inputs
+ `(("julia-specialfunctions" ,julia-specialfunctions)
+ ("julia-quadgk" ,julia-quadgk)
+ ("julia-unitful" ,julia-unitful)))
+ (home-page "https://juliaphysics.github.io/Measurements.jl/stable/")
+ (synopsis "Error propagation calculator and library")
+ (description "@code{Measurements.jl} is an error propagation calculator and
+library for physical measurements. It supports real and complex numbers with
+uncertainty, arbitrary precision calculations, operations with arrays, and
+numerical integration. The linear error propagation theory is employed to
+propagate the errors.")
+ (license license:expat)))
+
(define-public julia-measures
(package
(name "julia-measures")
--
2.33.0
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Wed, 22 Sep 2021 12:17:02 GMT) Full text and rfc822 format available.Message #29 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: Efraim Flashner <efraim <at> flashner.co.il> To: 50490 <at> debbugs.gnu.org Cc: Efraim Flashner <efraim <at> flashner.co.il> Subject: [PATCH 3/5] gnu: Add julia-mlstyle. Date: Wed, 22 Sep 2021 15:13:18 +0300
* gnu/packages/julia-xyz.scm (julia-mlstyle): New variable.
---
gnu/packages/julia-xyz.scm | 22 ++++++++++++++++++++++
1 file changed, 22 insertions(+)
diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 222f9f129e..3616ffd006 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -2508,6 +2508,28 @@ resolving them into absolute units.")
with @code{missing} values in Julia.")
(license license:expat)))
+(define-public julia-mlstyle
+ (package
+ (name "julia-mlstyle")
+ (version "0.4.10")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/thautwarm/MLStyle.jl")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0h1cd7cr4c4cnpqyj3180113gdbvcc047lqphp8a8gq5smp3c059"))))
+ (build-system julia-build-system)
+ (native-inputs
+ `(("julia-datastructures" ,julia-datastructures)))
+ (home-page "https://thautwarm.github.io/MLStyle.jl/latest/")
+ (synopsis "Julia functional programming infrastructures")
+ (description "This package provides consistent and extensible functional
+programming infrastructures, and metaprogramming facilities.")
+ (license license:expat)))
+
(define-public julia-mocking
(package
(name "julia-mocking")
--
2.33.0
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Wed, 22 Sep 2021 12:17:03 GMT) Full text and rfc822 format available.Message #32 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: Efraim Flashner <efraim <at> flashner.co.il> To: 50490 <at> debbugs.gnu.org Cc: Efraim Flashner <efraim <at> flashner.co.il> Subject: [PATCH 4/5] gnu: Add julia-pycall. Date: Wed, 22 Sep 2021 15:13:19 +0300
* gnu/packages/julia-xyz.scm (julia-pycall): New variable.
---
gnu/packages/julia-xyz.scm | 79 +++++++++++++++++++++++++++++++++++++-
1 file changed, 78 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 3616ffd006..1038d3f80b 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -26,7 +26,9 @@
#:use-module (guix git-download)
#:use-module (guix build-system julia)
#:use-module (gnu packages gcc)
- #:use-module (gnu packages julia-jll))
+ #:use-module (gnu packages julia-jll)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages python-xyz))
(define-public julia-abstractffts
(package
@@ -3038,6 +3040,81 @@ everything from run time algorithm choice to code generation at compile time.")
human-readable format.")
(license license:expat)))
+(define-public julia-pycall
+ (package
+ (name "julia-pycall")
+ (version "1.92.3")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/JuliaPy/PyCall.jl")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "07r99ni6nkxpyrp3wsb5qg4jxz7i2r08dyqbiffy2zm3g0bn88jq"))))
+ (build-system julia-build-system)
+ (arguments
+ `(#:imported-modules ((guix build python-build-system)
+ ,@%julia-build-system-modules)
+ #:modules ((guix build julia-build-system)
+ (guix build utils)
+ ((guix build python-build-system) #:prefix python:))
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'remove-conda
+ (lambda _
+ (substitute* "Project.toml"
+ ((".*Conda.*") ""))
+ (substitute* (list "src/PyCall.jl"
+ "test/runtests.jl")
+ (("import Conda") ""))
+ (substitute* "deps/depsutils.jl"
+ (("Conda.PYTHONDIR") "\"/\""))
+ #t))
+ (add-after 'unpack 'set-python
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let ((python (assoc-ref inputs "python")))
+ (setenv "PYCALL_JL_RUNTIME_PYTHON"
+ (string-append python "/bin/python3"))
+ (with-output-to-file "deps/deps.jl"
+ (lambda _
+ (format #t
+ "const python = \"~a/bin/python3\"~@
+ const pyprogramname = \"~a/bin/python3\"~@
+ const libpython = \"~a/lib/libpython~a.so.1.0\"~@
+ const PYTHONHOME = \"~a\"~@
+ const pyversion_build = v\"~a\"~@
+ const conda = false~%"
+ python
+ python
+ python
+ (python:python-version python)
+ python
+ ,(package-version python))))
+ #t)))
+ (add-before 'check 'pre-check
+ (lambda _
+ (setenv "CI" "true")
+ (setenv "JULIA_PKGEVAL" "true")
+ #t)))))
+ (propagated-inputs
+ `(("julia-macrotools" ,julia-macrotools)
+ ("julia-versionparsing" ,julia-versionparsing)))
+ (inputs
+ `(("python" ,python)))
+ (native-inputs
+ `(("python-numpy" ,python-numpy)))
+ (home-page "https://github.com/JuliaPy/PyCall.jl")
+ (synopsis "Call Python functions from the Julia language")
+ (description "This package provides the ability to directly call and fully
+interoperate with Python from the Julia language. You can import arbitrary
+Python modules from Julia, call Python functions (with automatic conversion of
+types between Julia and Python), define Python classes from Julia methods, and
+share large data structures between Julia and Python without copying them.")
+ (license license:expat)))
+
(define-public julia-quadgk
(package
(name "julia-quadgk")
--
2.33.0
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Wed, 22 Sep 2021 12:18:02 GMT) Full text and rfc822 format available.Message #35 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: Efraim Flashner <efraim <at> flashner.co.il> To: 50490 <at> debbugs.gnu.org Cc: Efraim Flashner <efraim <at> flashner.co.il> Subject: [PATCH 5/5] gnu: Add julia-ansicoloredprinters. Date: Wed, 22 Sep 2021 15:13:20 +0300
* gnu/packages/julia-xyz.scm (julia-ansicoloredprinters): New variable.
---
gnu/packages/julia-xyz.scm | 20 ++++++++++++++++++++
1 file changed, 20 insertions(+)
diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index 1038d3f80b..ec31d70531 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -100,6 +100,26 @@ acts like @code{convert(T, x)}, but without the restriction of returning a
be GPU compatible without throwing away the wrapper.")
(license license:expat)))
+(define-public julia-ansicoloredprinters
+ (package
+ (name "julia-ansicoloredprinters")
+ (version "0.0.1")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0dp5agljr0g50s5gn0pr70wrz01ggck6pb40ay3l4szhswq7mqzf"))))
+ (build-system julia-build-system)
+ (home-page "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
+ (synopsis "ANSI escape code translator")
+ (description "@code{ANSIColoredPrinters.jl} converts a text qualified by
+ANSI escape codes to another format.")
+ (license license:expat)))
+
(define-public julia-aqua
(package
(name "julia-aqua")
--
2.33.0
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Mon, 27 Sep 2021 17:12:02 GMT) Full text and rfc822 format available.Message #38 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: zimoun <zimon.toutoune <at> gmail.com> To: Efraim Flashner <efraim <at> flashner.co.il> Cc: 50490 <at> debbugs.gnu.org Subject: Re: bug#50490: [PATCH 0/5] Some julia packages Date: Mon, 27 Sep 2021 18:51:50 +0200
Hi Efraim,
On mer., 22 sept. 2021 at 15:13, Efraim Flashner <efraim <at> flashner.co.il> wrote:
> * gnu/packages/julia-xyz.scm (julia-quadgk): New variable.
> ---
> gnu/packages/julia-xyz.scm | 25 +++++++++++++++++++++++++
> 1 file changed, 25 insertions(+)
>
> diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
> index a80964c2b0..bd6a296463 100644
> --- a/gnu/packages/julia-xyz.scm
> +++ b/gnu/packages/julia-xyz.scm
> @@ -2985,6 +2985,31 @@ everything from run time algorithm choice to code generation at compile time.")
> human-readable format.")
> (license license:expat)))
>
> +(define-public julia-quadgk
> + (package
> + (name "julia-quadgk")
> + (version "2.4.1")
> + (source
> + (origin
> + (method git-fetch)
> + (uri (git-reference
> + (url "https://github.com/JuliaMath/QuadGK.jl")
> + (commit (string-append "v" version))))
> + (file-name (git-file-name name version))
> + (sha256
> + (base32 "1hy0629yai6xflgxaflk9764lzr1lzhlghimxk1aqi212q9c6n33"))))
> + (build-system julia-build-system)
> + (propagated-inputs
> + `(("julia-datastructures" ,julia-datastructures)))
> + (home-page "https://github.com/JuliaMath/QuadGK.jl")
> + (synopsis "Adaptive 1d numerical Gauss–Kronrod integration in Julia")
I would not write «in Julia».
> + (description "This package provides support for one-dimensional numerical
> +integration in Julia using adaptive Gauss-Kronrod quadrature. The code was
> +originally part of Base Julia. It supports integration of arbitrary numeric
> +types, including arbitrary precision (@code{BigFloat}), and even integration of
> +arbitrary normed vector spaces (e.g. matrix-valued integrands).")
> + (license license:expat)))
LGTM.
Cheers,
simon
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Mon, 27 Sep 2021 17:12:02 GMT) Full text and rfc822 format available.Message #41 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: zimoun <zimon.toutoune <at> gmail.com> To: Efraim Flashner <efraim <at> flashner.co.il> Cc: 50490 <at> debbugs.gnu.org Subject: Re: bug#50490: [PATCH 0/5] Some julia packages Date: Mon, 27 Sep 2021 18:54:10 +0200
Hi Efraim,
On mer., 22 sept. 2021 at 15:13, Efraim Flashner <efraim <at> flashner.co.il> wrote:
> * gnu/packages/julia-xyz.scm (julia-mlstyle): New variable.
> ---
> gnu/packages/julia-xyz.scm | 22 ++++++++++++++++++++++
> 1 file changed, 22 insertions(+)
>
> diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
> index 222f9f129e..3616ffd006 100644
> --- a/gnu/packages/julia-xyz.scm
> +++ b/gnu/packages/julia-xyz.scm
> @@ -2508,6 +2508,28 @@ resolving them into absolute units.")
> with @code{missing} values in Julia.")
> (license license:expat)))
>
> +(define-public julia-mlstyle
> + (package
> + (name "julia-mlstyle")
> + (version "0.4.10")
> + (source
> + (origin
> + (method git-fetch)
> + (uri (git-reference
> + (url "https://github.com/thautwarm/MLStyle.jl")
> + (commit (string-append "v" version))))
> + (file-name (git-file-name name version))
> + (sha256
> + (base32 "0h1cd7cr4c4cnpqyj3180113gdbvcc047lqphp8a8gq5smp3c059"))))
> + (build-system julia-build-system)
> + (native-inputs
> + `(("julia-datastructures" ,julia-datastructures)))
> + (home-page "https://thautwarm.github.io/MLStyle.jl/latest/")
> + (synopsis "Julia functional programming infrastructures")
> + (description "This package provides consistent and extensible functional
> +programming infrastructures, and metaprogramming facilities.")
> + (license license:expat)))
LGTM. I notice that the package raises warning at the check phase.
Cheers,
simon
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Mon, 27 Sep 2021 17:12:03 GMT) Full text and rfc822 format available.Message #44 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: zimoun <zimon.toutoune <at> gmail.com> To: Efraim Flashner <efraim <at> flashner.co.il> Cc: 50490 <at> debbugs.gnu.org Subject: Re: bug#50490: [PATCH 0/5] Some julia packages Date: Mon, 27 Sep 2021 18:58:18 +0200
Hi Efraim,
On mer., 22 sept. 2021 at 15:13, Efraim Flashner <efraim <at> flashner.co.il> wrote:
> * gnu/packages/julia-xyz.scm (julia-pycall): New variable.
> ---
> gnu/packages/julia-xyz.scm | 79 +++++++++++++++++++++++++++++++++++++-
> 1 file changed, 78 insertions(+), 1 deletion(-)
>
> diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
> index 3616ffd006..1038d3f80b 100644
> --- a/gnu/packages/julia-xyz.scm
> +++ b/gnu/packages/julia-xyz.scm
> @@ -26,7 +26,9 @@
> #:use-module (guix git-download)
> #:use-module (guix build-system julia)
> #:use-module (gnu packages gcc)
> - #:use-module (gnu packages julia-jll))
> + #:use-module (gnu packages julia-jll)
> + #:use-module (gnu packages python)
> + #:use-module (gnu packages python-xyz))
>
> (define-public julia-abstractffts
> (package
> @@ -3038,6 +3040,81 @@ everything from run time algorithm choice to code generation at compile time.")
> human-readable format.")
> (license license:expat)))
>
> +(define-public julia-pycall
> + (package
> + (name "julia-pycall")
> + (version "1.92.3")
> + (source
> + (origin
> + (method git-fetch)
> + (uri (git-reference
> + (url "https://github.com/JuliaPy/PyCall.jl")
> + (commit (string-append "v" version))))
> + (file-name (git-file-name name version))
> + (sha256
> + (base32
> + "07r99ni6nkxpyrp3wsb5qg4jxz7i2r08dyqbiffy2zm3g0bn88jq"))))
> + (build-system julia-build-system)
> + (arguments
> + `(#:imported-modules ((guix build python-build-system)
> + ,@%julia-build-system-modules)
> + #:modules ((guix build julia-build-system)
> + (guix build utils)
> + ((guix build python-build-system) #:prefix python:))
> + #:phases
> + (modify-phases %standard-phases
> + (add-after 'unpack 'remove-conda
> + (lambda _
> + (substitute* "Project.toml"
> + ((".*Conda.*") ""))
> + (substitute* (list "src/PyCall.jl"
> + "test/runtests.jl")
> + (("import Conda") ""))
> + (substitute* "deps/depsutils.jl"
> + (("Conda.PYTHONDIR") "\"/\""))
> + #t))
> + (add-after 'unpack 'set-python
> + (lambda* (#:key inputs outputs #:allow-other-keys)
> + (let ((python (assoc-ref inputs "python")))
> + (setenv "PYCALL_JL_RUNTIME_PYTHON"
> + (string-append python "/bin/python3"))
> + (with-output-to-file "deps/deps.jl"
> + (lambda _
> + (format #t
> + "const python = \"~a/bin/python3\"~@
> + const pyprogramname = \"~a/bin/python3\"~@
> + const libpython = \"~a/lib/libpython~a.so.1.0\"~@
> + const PYTHONHOME = \"~a\"~@
> + const pyversion_build = v\"~a\"~@
> + const conda = false~%"
> + python
> + python
> + python
> + (python:python-version python)
> + python
> + ,(package-version python))))
> + #t)))
> + (add-before 'check 'pre-check
> + (lambda _
> + (setenv "CI" "true")
> + (setenv "JULIA_PKGEVAL" "true")
> + #t)))))
> + (propagated-inputs
> + `(("julia-macrotools" ,julia-macrotools)
> + ("julia-versionparsing" ,julia-versionparsing)))
> + (inputs
> + `(("python" ,python)))
> + (native-inputs
> + `(("python-numpy" ,python-numpy)))
> + (home-page "https://github.com/JuliaPy/PyCall.jl")
> + (synopsis "Call Python functions from the Julia language")
> + (description "This package provides the ability to directly call and fully
> +interoperate with Python from the Julia language. You can import arbitrary
> +Python modules from Julia, call Python functions (with automatic conversion of
> +types between Julia and Python), define Python classes from Julia methods, and
> +share large data structures between Julia and Python without copying them.")
> + (license license:expat)))
LGTM!
Cheers,
simon
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Mon, 27 Sep 2021 17:12:04 GMT) Full text and rfc822 format available.Message #47 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: zimoun <zimon.toutoune <at> gmail.com> To: Efraim Flashner <efraim <at> flashner.co.il> Cc: 50490 <at> debbugs.gnu.org Subject: Re: bug#50490: [PATCH 0/5] Some julia packages Date: Mon, 27 Sep 2021 18:59:19 +0200
Hi Efraim,
On mer., 22 sept. 2021 at 15:13, Efraim Flashner <efraim <at> flashner.co.il> wrote:
> * gnu/packages/julia-xyz.scm (julia-ansicoloredprinters): New variable.
> ---
> gnu/packages/julia-xyz.scm | 20 ++++++++++++++++++++
> 1 file changed, 20 insertions(+)
>
> diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
> index 1038d3f80b..ec31d70531 100644
> --- a/gnu/packages/julia-xyz.scm
> +++ b/gnu/packages/julia-xyz.scm
> @@ -100,6 +100,26 @@ acts like @code{convert(T, x)}, but without the restriction of returning a
> be GPU compatible without throwing away the wrapper.")
> (license license:expat)))
>
> +(define-public julia-ansicoloredprinters
> + (package
> + (name "julia-ansicoloredprinters")
> + (version "0.0.1")
> + (source
> + (origin
> + (method git-fetch)
> + (uri (git-reference
> + (url "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
> + (commit (string-append "v" version))))
> + (file-name (git-file-name name version))
> + (sha256
> + (base32 "0dp5agljr0g50s5gn0pr70wrz01ggck6pb40ay3l4szhswq7mqzf"))))
> + (build-system julia-build-system)
> + (home-page "https://github.com/JuliaDocs/ANSIColoredPrinters.jl")
> + (synopsis "ANSI escape code translator")
> + (description "@code{ANSIColoredPrinters.jl} converts a text qualified by
> +ANSI escape codes to another format.")
> + (license license:expat)))
LGTM!
Cheers,
simon
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Mon, 27 Sep 2021 17:12:04 GMT) Full text and rfc822 format available.Message #50 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: zimoun <zimon.toutoune <at> gmail.com> To: Efraim Flashner <efraim <at> flashner.co.il> Cc: 50490 <at> debbugs.gnu.org Subject: Re: bug#50490: [PATCH 0/5] Some julia packages Date: Mon, 27 Sep 2021 19:01:25 +0200
Hi Efraim, On mar., 14 sept. 2021 at 21:19, Efraim Flashner <efraim <at> flashner.co.il> wrote: > * gnu/packages/julia-jll.scm (julia-libsass-jll): New variable. > --- > gnu/packages/julia-jll.scm | 43 ++++++++++++++++++++++++++++++++++++++ > 1 file changed, 43 insertions(+) LGTM! Cheers, simon
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Mon, 27 Sep 2021 17:12:05 GMT) Full text and rfc822 format available.Message #53 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: zimoun <zimon.toutoune <at> gmail.com> To: Efraim Flashner <efraim <at> flashner.co.il> Cc: 50490 <at> debbugs.gnu.org Subject: Re: bug#50490: [PATCH 0/5] Some julia packages Date: Mon, 27 Sep 2021 19:03:06 +0200
Hi Efraim,
On mar., 14 sept. 2021 at 21:19, Efraim Flashner <efraim <at> flashner.co.il> wrote:
> * gnu/packages/julia-xyz.scm (julia-sass): New variable.
> ---
> gnu/packages/julia-xyz.scm | 22 ++++++++++++++++++++++
> 1 file changed, 22 insertions(+)
>
> diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
> index a80964c2b0..2f953a33b7 100644
> --- a/gnu/packages/julia-xyz.scm
> +++ b/gnu/packages/julia-xyz.scm
> @@ -3403,6 +3403,28 @@ (define-public julia-safetestsets
> a loadable module.")
> (license license:expat))))
>
> +(define-public julia-sass
> + (package
> + (name "julia-sass")
> + (version "0.2.0")
> + (source
> + (origin
> + (method git-fetch)
> + (uri (git-reference
> + (url "https://github.com/piever/Sass.jl")
> + (commit (string-append "v" version))))
> + (file-name (git-file-name name version))
> + (sha256
> + (base32 "0y7kkkj717h5cj659ssry89i5r64symr6pvhr6vv4qmaxrnjxj92"))))
> + (build-system julia-build-system)
> + (propagated-inputs
> + `(("julia-libsass-jll" ,julia-libsass-jll)))
> + (home-page "https://github.com/piever/Sass.jl")
> + (synopsis "Compile scss and sass file to css in Julia")
Again, I would remove «in Julia>..
> + (description "This library provides a simple Julian API to use
> the
I would write «This package provides…»
> +@code{libsass} library to compile scss and sass files to css.")
> + (license license:expat)))
LGTM.
Cheers,
simon
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Mon, 27 Sep 2021 17:12:05 GMT) Full text and rfc822 format available.Message #56 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: zimoun <zimon.toutoune <at> gmail.com> To: Efraim Flashner <efraim <at> flashner.co.il> Cc: 50490 <at> debbugs.gnu.org Subject: Re: bug#50490: [PATCH 0/5] Some julia packages Date: Mon, 27 Sep 2021 18:53:16 +0200
Hi Efraim,
On mer., 22 sept. 2021 at 15:13, Efraim Flashner <efraim <at> flashner.co.il> wrote:
> * gnu/packages/julia-xyz.scm (julia-measurements): New variable.
> ---
> gnu/packages/julia-xyz.scm | 31 +++++++++++++++++++++++++++++++
> 1 file changed, 31 insertions(+)
>
> diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
> index bd6a296463..222f9f129e 100644
> --- a/gnu/packages/julia-xyz.scm
> +++ b/gnu/packages/julia-xyz.scm
> @@ -2433,6 +2433,37 @@ may include other factorizations such as the LQ factorization.")
> TLS} and cryptography C library for Julia.")
> (license license:expat)))
>
> +(define-public julia-measurements
> + (package
> + (name "julia-measurements")
> + (version "2.6.0")
> + (source
> + (origin
> + (method git-fetch)
> + (uri (git-reference
> + (url "https://github.com/JuliaPhysics/Measurements.jl")
> + (commit (string-append "v" version))))
> + (file-name (git-file-name name version))
> + (sha256
> + (base32 "05p3f0gr4sv4maq8cix5fi8ldq0zagswqsd43xn6fhy046f936mz"))))
> + (build-system julia-build-system)
> + (propagated-inputs
> + `(("julia-calculus" ,julia-calculus)
> + ("julia-recipesbase" ,julia-recipesbase)
> + ("julia-requires" ,julia-requires)))
> + (native-inputs
> + `(("julia-specialfunctions" ,julia-specialfunctions)
> + ("julia-quadgk" ,julia-quadgk)
> + ("julia-unitful" ,julia-unitful)))
Could we keep alphabetical sorted list?
> + (home-page "https://juliaphysics.github.io/Measurements.jl/stable/")
> + (synopsis "Error propagation calculator and library")
> + (description "@code{Measurements.jl} is an error propagation calculator and
> +library for physical measurements. It supports real and complex numbers with
> +uncertainty, arbitrary precision calculations, operations with arrays, and
> +numerical integration. The linear error propagation theory is employed to
> +propagate the errors.")
> + (license license:expat)))
LGTM.
Cheers,
simon
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Mon, 27 Sep 2021 17:12:05 GMT) Full text and rfc822 format available.Message #59 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: zimoun <zimon.toutoune <at> gmail.com> To: Efraim Flashner <efraim <at> flashner.co.il> Cc: 50490 <at> debbugs.gnu.org Subject: Re: bug#50490: [PATCH 0/5] Some julia packages Date: Mon, 27 Sep 2021 19:04:21 +0200
Hi Efraim, On mar., 14 sept. 2021 at 21:19, Efraim Flashner <efraim <at> flashner.co.il> wrote: > * gnu/packages/julia-xyz.scm (julia-ansicoloredprinters): New variable. > --- > gnu/packages/julia-xyz.scm | 20 ++++++++++++++++++++ > 1 file changed, 20 insertions(+) Already added by previous patch. This one should be dropped. Cheers, simon
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Mon, 27 Sep 2021 17:12:06 GMT) Full text and rfc822 format available.Message #62 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: zimoun <zimon.toutoune <at> gmail.com> To: Efraim Flashner <efraim <at> flashner.co.il> Cc: 50490 <at> debbugs.gnu.org Subject: Re: bug#50490: [PATCH 0/5] Some julia packages Date: Mon, 27 Sep 2021 19:11:18 +0200
Hi Efraim,
On mar., 14 sept. 2021 at 21:19, Efraim Flashner <efraim <at> flashner.co.il> wrote:
I would add here an explanation, along these lines: «These four
variables are added by the same commit to avoid a cyclic dependency.»
> * gnu/packages/julia-xyz.scm (julia-documenter,
> julia-documentermarkdown, julia-documentertools): New variables.
> (julia-documenter-0.22): New hidden variable.
> ---
> gnu/packages/julia-xyz.scm | 146 ++++++++++++++++++++++++++++++++++++-
> 1 file changed, 145 insertions(+), 1 deletion(-)
The patch does not apply…
> diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
> index 309687019d..e7e7680cca 100644
> --- a/gnu/packages/julia-xyz.scm
> +++ b/gnu/packages/julia-xyz.scm
> @@ -26,7 +26,9 @@ (define-module (gnu packages julia-xyz)
> #:use-module (guix git-download)
> #:use-module (guix build-system julia)
> #:use-module (gnu packages gcc)
> - #:use-module (gnu packages julia-jll))
> + #:use-module (gnu packages julia-jll)
> + #:use-module (gnu packages python)
> + #:use-module (gnu packages version-control))
>
> (define-public julia-abstractffts
> (package
> @@ -990,6 +992,148 @@ (define-public julia-docstringextensions
> valuable enough at this time.")
> (license license:expat)))
>
> +;; By removing all the javascript and css downloads any HTML documentation
> +;; produced by this package will not be very useful.
> +(define-public julia-documenter
> + (package
> + (name "julia-documenter")
> + (version "0.27.6")
> + (source
> + (origin
> + (method git-fetch)
> + (uri (git-reference
> + (url "https://github.com/JuliaDocs/Documenter.jl")
> + (commit (string-append "v" version))))
> + (file-name (git-file-name name version))
> + (sha256
> + (base32 "1y6rql7cxc7hfhc8rfq1mdmffp70sqzyh4vnnq93fziwrc8c8sbj"))))
> + (build-system julia-build-system)
> + (arguments
> + `(#:phases
> + (modify-phases %standard-phases
> + (add-after 'unpack 'patch-source
> + (lambda* (#:key inputs #:allow-other-keys)
> + (substitute* "src/Deps.jl"
> + (("pip install")
> + (string-append (assoc-ref inputs "python")
> + "/bin/pip install")))
> + #t))
> + (add-after 'unpack 'remove-javascript-downloads
> + (lambda _
> + (substitute* "src/Writers/HTMLWriter.jl"
> + (("cdnjs.cloudflare.com") "example.com"))
> + ;; Removing the javascript downloads causes these tests fail.
> + (substitute* "test/examples/tests.jl"
> + ((".*Main\\.examples_html_doc.*") "")
> + ((".*Main\\.examples_html_mathjax3_doc.*") ""))
> + #t)))))
> + (propagated-inputs
> + `(("julia-ansicoloredprinters" ,julia-ansicoloredprinters)
> + ("julia-docstringextensions" ,julia-docstringextensions)
> + ("julia-iocapture" ,julia-iocapture)
> + ("julia-json" ,julia-json)))
> + (inputs
> + `(("python" ,python-wrapper)))
> + (native-inputs
> + `(("git" ,git-minimal)
> + ("julia-documentermarkdown" ,julia-documentermarkdown)
> + ("julia-documentertools" ,julia-documentertools)))
> + (home-page "https://juliadocs.github.io/Documenter.jl")
> + (synopsis "Documentation generator for Julia")
> + (description "This package provides a documentation generator for Julia.")
> + (license license:expat)))
> +
> +(define-public julia-documenter-0.22
Do we need to make it public? Is it not enough to keep it hidden?
> + (package
> + (inherit julia-documenter)
> + (name "julia-documenter")
> + (version "0.22.6")
> + (source
> + (origin
> + (method git-fetch)
> + (uri (git-reference
> + (url "https://github.com/JuliaDocs/Documenter.jl")
> + (commit (string-append "v" version))))
> + (file-name (git-file-name name version))
> + (sha256
> + (base32
> + "1z8b7267y7yn5nx8sjwkmc0ph97vmv42q52jg7s89ghqb9xx3wv5"))))
> + (arguments
> + `(#:tests? #f ; Some tests require network.
> + #:phases
> + (modify-phases %standard-phases
> + (add-after 'unpack 'remove-javascript-downloads
> + (lambda _
> + ;; This isn't problematic because we only use
> + ;; this package for bootstrapping.
> + (substitute* '("assets/html/documenter.js"
> + "assets/html/search.js"
> + "src/Writers/HTMLWriter.jl")
> + (("cdnjs.cloudflare.com") "example.com"))
> + #t)))))
> + (propagated-inputs
> + `(("julia-docstringextensions" ,julia-docstringextensions)
> + ("julia-json" ,julia-json)))
> + (inputs `())
> + (native-inputs `())
> + (properties '((hidden? . #t)))))
> +
> +(define-public julia-documentermarkdown
> + (package
> + (name "julia-documentermarkdown")
> + (version "0.2.2")
> + (source
> + (origin
> + (method git-fetch)
> + (uri (git-reference
> + (url "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
> + (commit (string-append "v" version))))
> + (file-name (git-file-name name version))
> + (sha256
> + (base32 "0sx89hi5p2f8zi2rp5qrv06m270d90pxj5d2y5cxls1spax7wqx8"))))
> + (build-system julia-build-system)
> + (inputs
> + ;; We don't want to propagate the bootstrap version.
> + ;; Cycle with Documenter.jl in later versions.
> + `(("julia-documenter" ,julia-documenter-0.22)))
> + (home-page "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
> + (synopsis "Documenter's Markdown")
> + (description "This package enables the Markdown / MkDocs backend of
> +@code{Documenter.jl}.")
> + (license license:expat)))
> +
> +(define-public julia-documentertools
> + (package
> + (name "julia-documentertools")
> + (version "0.1.13")
> + (source
> + (origin
> + (method git-fetch)
> + (uri (git-reference
> + (url "https://github.com/JuliaDocs/DocumenterTools.jl")
> + (commit (string-append "v" version))))
> + (file-name (git-file-name name version))
> + (sha256
> + (base32 "05p57p8xlkn42m1lv9gq4hl96vp7hpj19d51p828ai1rbpcpi3a6"))))
> + (build-system julia-build-system)
> + (arguments
> + `(#:tests? #f)) ; Tests require network.
> + (inputs
> + ;; We don't want to propagate the bootstrap version.
> + ;; Cycle with Documenter.jl in later versions.
> + `(("julia-documenter" ,julia-documenter-0.22)))
> + (propagated-inputs
> + `(("julia-docstringextensions" ,julia-docstringextensions)
> + ("julia-gumbo" ,julia-gumbo)
> + ("julia-sass" ,julia-sass)))
> + (native-inputs
> + `(("julia-example" ,julia-example)))
> + (home-page "https://github.com/JuliaDocs/DocumenterTools.jl")
> + (synopsis "Extra tools for setting up Documenter")
I would write «setting up Documenter.jl»
> + (description "This package contains utilities for setting up documentation
> +generation with @code{Documenter.jl}.")
> + (license license:expat)))
> +
> (define-public julia-diffresults
> (package
> (name "julia-diffresults")
…so I have not tried it. It LGTM though.
Cheers,
simon
guix-patches <at> gnu.org:bug#50490; Package guix-patches.
(Thu, 30 Sep 2021 11:20:02 GMT) Full text and rfc822 format available.Message #65 received at 50490 <at> debbugs.gnu.org (full text, mbox):
From: Efraim Flashner <efraim <at> flashner.co.il> To: zimoun <zimon.toutoune <at> gmail.com> Cc: 50490 <at> debbugs.gnu.org Subject: Re: bug#50490: [PATCH 0/5] Some julia packages Date: Thu, 30 Sep 2021 14:18:57 +0300
[Message part 1 (text/plain, inline)]
On Mon, Sep 27, 2021 at 07:11:18PM +0200, zimoun wrote:
> Hi Efraim,
>
> On mar., 14 sept. 2021 at 21:19, Efraim Flashner <efraim <at> flashner.co.il> wrote:
>
> I would add here an explanation, along these lines: «These four
> variables are added by the same commit to avoid a cyclic dependency.»
>
> > * gnu/packages/julia-xyz.scm (julia-documenter,
> > julia-documentermarkdown, julia-documentertools): New variables.
> > (julia-documenter-0.22): New hidden variable.
> > ---
> > gnu/packages/julia-xyz.scm | 146 ++++++++++++++++++++++++++++++++++++-
> > 1 file changed, 145 insertions(+), 1 deletion(-)
>
> The patch does not apply…
Probably due to the module imports. python-xyz was added in a different
patch.
>
> > diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
> > index 309687019d..e7e7680cca 100644
> > --- a/gnu/packages/julia-xyz.scm
> > +++ b/gnu/packages/julia-xyz.scm
> > @@ -26,7 +26,9 @@ (define-module (gnu packages julia-xyz)
> > #:use-module (guix git-download)
> > #:use-module (guix build-system julia)
> > #:use-module (gnu packages gcc)
> > - #:use-module (gnu packages julia-jll))
> > + #:use-module (gnu packages julia-jll)
> > + #:use-module (gnu packages python)
> > + #:use-module (gnu packages version-control))
> >
> > (define-public julia-abstractffts
> > (package
> > @@ -990,6 +992,148 @@ (define-public julia-docstringextensions
> > valuable enough at this time.")
> > (license license:expat)))
> >
> > +;; By removing all the javascript and css downloads any HTML documentation
> > +;; produced by this package will not be very useful.
> > +(define-public julia-documenter
> > + (package
> > + (name "julia-documenter")
> > + (version "0.27.6")
> > + (source
> > + (origin
> > + (method git-fetch)
> > + (uri (git-reference
> > + (url "https://github.com/JuliaDocs/Documenter.jl")
> > + (commit (string-append "v" version))))
> > + (file-name (git-file-name name version))
> > + (sha256
> > + (base32 "1y6rql7cxc7hfhc8rfq1mdmffp70sqzyh4vnnq93fziwrc8c8sbj"))))
> > + (build-system julia-build-system)
> > + (arguments
> > + `(#:phases
> > + (modify-phases %standard-phases
> > + (add-after 'unpack 'patch-source
> > + (lambda* (#:key inputs #:allow-other-keys)
> > + (substitute* "src/Deps.jl"
> > + (("pip install")
> > + (string-append (assoc-ref inputs "python")
> > + "/bin/pip install")))
> > + #t))
> > + (add-after 'unpack 'remove-javascript-downloads
> > + (lambda _
> > + (substitute* "src/Writers/HTMLWriter.jl"
> > + (("cdnjs.cloudflare.com") "example.com"))
> > + ;; Removing the javascript downloads causes these tests fail.
> > + (substitute* "test/examples/tests.jl"
> > + ((".*Main\\.examples_html_doc.*") "")
> > + ((".*Main\\.examples_html_mathjax3_doc.*") ""))
> > + #t)))))
> > + (propagated-inputs
> > + `(("julia-ansicoloredprinters" ,julia-ansicoloredprinters)
> > + ("julia-docstringextensions" ,julia-docstringextensions)
> > + ("julia-iocapture" ,julia-iocapture)
> > + ("julia-json" ,julia-json)))
> > + (inputs
> > + `(("python" ,python-wrapper)))
> > + (native-inputs
> > + `(("git" ,git-minimal)
> > + ("julia-documentermarkdown" ,julia-documentermarkdown)
> > + ("julia-documentertools" ,julia-documentertools)))
> > + (home-page "https://juliadocs.github.io/Documenter.jl")
> > + (synopsis "Documentation generator for Julia")
> > + (description "This package provides a documentation generator for Julia.")
> > + (license license:expat)))
> > +
> > +(define-public julia-documenter-0.22
>
> Do we need to make it public? Is it not enough to keep it hidden?
It should be enough to not make it hidden and not public. Also, I took
another look at it and adjusted the package slightly so it can use the
current julia-documenter version and not an older version for the
bootstrap.
>
> > + (package
> > + (inherit julia-documenter)
> > + (name "julia-documenter")
> > + (version "0.22.6")
> > + (source
> > + (origin
> > + (method git-fetch)
> > + (uri (git-reference
> > + (url "https://github.com/JuliaDocs/Documenter.jl")
> > + (commit (string-append "v" version))))
> > + (file-name (git-file-name name version))
> > + (sha256
> > + (base32
> > + "1z8b7267y7yn5nx8sjwkmc0ph97vmv42q52jg7s89ghqb9xx3wv5"))))
> > + (arguments
> > + `(#:tests? #f ; Some tests require network.
> > + #:phases
> > + (modify-phases %standard-phases
> > + (add-after 'unpack 'remove-javascript-downloads
> > + (lambda _
> > + ;; This isn't problematic because we only use
> > + ;; this package for bootstrapping.
> > + (substitute* '("assets/html/documenter.js"
> > + "assets/html/search.js"
> > + "src/Writers/HTMLWriter.jl")
> > + (("cdnjs.cloudflare.com") "example.com"))
> > + #t)))))
> > + (propagated-inputs
> > + `(("julia-docstringextensions" ,julia-docstringextensions)
> > + ("julia-json" ,julia-json)))
> > + (inputs `())
> > + (native-inputs `())
> > + (properties '((hidden? . #t)))))
> > +
> > +(define-public julia-documentermarkdown
> > + (package
> > + (name "julia-documentermarkdown")
> > + (version "0.2.2")
> > + (source
> > + (origin
> > + (method git-fetch)
> > + (uri (git-reference
> > + (url "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
> > + (commit (string-append "v" version))))
> > + (file-name (git-file-name name version))
> > + (sha256
> > + (base32 "0sx89hi5p2f8zi2rp5qrv06m270d90pxj5d2y5cxls1spax7wqx8"))))
> > + (build-system julia-build-system)
> > + (inputs
> > + ;; We don't want to propagate the bootstrap version.
> > + ;; Cycle with Documenter.jl in later versions.
> > + `(("julia-documenter" ,julia-documenter-0.22)))
> > + (home-page "https://github.com/JuliaDocs/DocumenterMarkdown.jl")
> > + (synopsis "Documenter's Markdown")
> > + (description "This package enables the Markdown / MkDocs backend of
> > +@code{Documenter.jl}.")
> > + (license license:expat)))
> > +
> > +(define-public julia-documentertools
> > + (package
> > + (name "julia-documentertools")
> > + (version "0.1.13")
> > + (source
> > + (origin
> > + (method git-fetch)
> > + (uri (git-reference
> > + (url "https://github.com/JuliaDocs/DocumenterTools.jl")
> > + (commit (string-append "v" version))))
> > + (file-name (git-file-name name version))
> > + (sha256
> > + (base32 "05p57p8xlkn42m1lv9gq4hl96vp7hpj19d51p828ai1rbpcpi3a6"))))
> > + (build-system julia-build-system)
> > + (arguments
> > + `(#:tests? #f)) ; Tests require network.
> > + (inputs
> > + ;; We don't want to propagate the bootstrap version.
> > + ;; Cycle with Documenter.jl in later versions.
> > + `(("julia-documenter" ,julia-documenter-0.22)))
> > + (propagated-inputs
> > + `(("julia-docstringextensions" ,julia-docstringextensions)
> > + ("julia-gumbo" ,julia-gumbo)
> > + ("julia-sass" ,julia-sass)))
> > + (native-inputs
> > + `(("julia-example" ,julia-example)))
> > + (home-page "https://github.com/JuliaDocs/DocumenterTools.jl")
> > + (synopsis "Extra tools for setting up Documenter")
>
> I would write «setting up Documenter.jl»
>
> > + (description "This package contains utilities for setting up documentation
> > +generation with @code{Documenter.jl}.")
> > + (license license:expat)))
> > +
> > (define-public julia-diffresults
> > (package
> > (name "julia-diffresults")
>
> …so I have not tried it. It LGTM though.
>
> Cheers,
> simon
--
Efraim Flashner <efraim <at> flashner.co.il> רנשלפ םירפא
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Efraim Flashner <efraim <at> flashner.co.il>:Efraim Flashner <efraim <at> flashner.co.il>:Message #70 received at 50490-done <at> debbugs.gnu.org (full text, mbox):
From: Efraim Flashner <efraim <at> flashner.co.il> To: 50490-done <at> debbugs.gnu.org Subject: Re: bug#50490: Acknowledgement ([PATCH 0/5] Some julia packages) Date: Thu, 30 Sep 2021 15:35:35 +0300
[Message part 1 (text/plain, inline)]
Patches pushed. -- Efraim Flashner <efraim <at> flashner.co.il> רנשלפ םירפא GPG key = A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351 Confidentiality cannot be guaranteed on emails sent or received unencrypted
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