GNU bug report logs - #50932
[PATCH] gnu: Add r-bien

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: jgart <jgart <at> dismail.de>
To: Guix Patches <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-bien
Date: Fri, 1 Oct 2021 05:24:20 -0400

Hi Guix,

Here is a patch for r-bien.

https://cran.r-project.org/web/packages/BIEN/index.html

all best,

jgart

Message #8 received at 50932 <at> debbugs.gnu.org (full text, mbox):

From: jgart <jgart <at> dismail.de>
To: 50932 <at> debbugs.gnu.org
Cc: jgart <jgart <at> dismail.de>
Subject: [PATCH 1/2] gnu: Add r-fasterize.
Date: Fri,  1 Oct 2021 05:26:06 -0400

* gnu/packages/cran.scm (r-fasterize): New variable.
---
 gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index ebfe9fd506..5f23f026ad 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -32038,6 +32038,34 @@ Python module, this utility provides a flexible and extensible way of
 formatting and delivering log messages with low overhead.")
     (license license:agpl3+)))
 
+(define-public r-fasterize
+  (package
+    (name "r-fasterize")
+    (version "1.0.3")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "fasterize" version))
+        (sha256
+          (base32 "10bzl77c1b9jhcn1xp467qzp2n8c7s3wpxn53qjh1nwvbri5kd32"))))
+    (properties `((upstream-name . "fasterize")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-raster" ,r-raster)
+        ("r-rcpp" ,r-rcpp)
+        ("r-rcpparmadillo" ,r-rcpparmadillo)
+        ("r-sp" ,r-sp)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page "https://github.com/ecohealthalliance/fasterize")
+    (synopsis "Fast Polygon to Raster Conversion")
+    (description
+"This package provides a drop-in replacement for @code{rasterize} from
+the @code{raster} package that takes sf-type objects, and is much faster.
+There is support for the main options provided by the @code{rasterize}
+function, including setting the field used and background value, and
+options for aggregating multi-layer rasters.")
+    (license license:expat)))
+
 (define-public r-ggh4x
   (package
     (name "r-ggh4x")
-- 
2.33.0

Message #11 received at 50932 <at> debbugs.gnu.org (full text, mbox):

From: jgart <jgart <at> dismail.de>
To: 50932 <at> debbugs.gnu.org
Cc: jgart <jgart <at> dismail.de>
Subject: [PATCH 2/2] gnu: Add r-bien.
Date: Fri,  1 Oct 2021 05:26:07 -0400

* gnu/packages/cran.scm (r-bien): New variable.
---
 gnu/packages/cran.scm | 37 +++++++++++++++++++++++++++++++++++++
 1 file changed, 37 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5f23f026ad..3dee6feb49 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -32066,6 +32066,43 @@ function, including setting the field used and background value, and
 options for aggregating multi-layer rasters.")
     (license license:expat)))
 
+(define-public r-bien
+  (package
+    (name "r-bien")
+    (version "1.2.4")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (cran-uri "BIEN" version))
+        (sha256
+          (base32 "1dagrs54ciagm2mgqrvxl6k2akahr0qk63ifxqnks7iljm0x1gw6"))))
+    (properties `((upstream-name . "BIEN")))
+    (build-system r-build-system)
+    (native-inputs
+      `(("r-knitr" ,r-knitr)
+        ("r-testthat" ,r-testthat)))
+    (propagated-inputs
+      `(("r-ape" ,r-ape)
+        ("r-dbi" ,r-dbi)
+        ("r-doparallel" ,r-doparallel)
+        ("r-fasterize" ,r-fasterize)
+        ("r-foreach" ,r-foreach)
+        ("r-raster" ,r-raster)
+        ("r-rgdal" ,r-rgdal)
+        ("r-rgeos" ,r-rgeos)
+        ("r-rpostgresql" ,r-rpostgresql)
+        ("r-sf" ,r-sf)
+        ("r-sp" ,r-sp)))
+    (home-page "https://cran.r-project.org/package=BIEN")
+    (synopsis "Tools for Accessing the BIEN Database")
+    (description
+"This package provides Tools for Accessing the Botanical Information
+and Ecology Network Database.  The BIEN database contains cleaned and
+standardized botanical data including occurrence, trait, plot and taxonomic
+data.  This package provides functions that query the BIEN database by
+constructing and executing optimized SQL queries.")
+    (license license:expat)))
+
 (define-public r-ggh4x
   (package
     (name "r-ggh4x")
-- 
2.33.0

Message #16 received at 50932-done <at> debbugs.gnu.org (full text, mbox):

From: Ludovic Courtès <ludo <at> gnu.org>
To: jgart <jgart <at> dismail.de>
Cc: 50932-done <at> debbugs.gnu.org
Subject: Re: bug#50932: [PATCH] gnu: Add r-bien
Date: Sat, 30 Oct 2021 19:02:31 +0200

[Message part 1 (text/plain, inline)]

Hi jgart,

jgart <jgart <at> dismail.de> skribis:

> Here is a patch for r-bien.
>
> https://cran.r-project.org/web/packages/BIEN/index.html

Applied both patches with the minor tweak below.

Thanks!

Ludo’.

[Message part 2 (text/x-patch, inline)]

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 4cff30c092..5448c52330 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -32173,10 +32173,10 @@ (define-public r-bien
         ("r-sf" ,r-sf)
         ("r-sp" ,r-sp)))
     (home-page "https://cran.r-project.org/package=BIEN")
-    (synopsis "Tools for Accessing the BIEN Database")
+    (synopsis "Tools for accessing the BIEN database")
     (description
-"This package provides Tools for Accessing the Botanical Information
-and Ecology Network Database.  The BIEN database contains cleaned and
+     "This package provides tools for accessing the Botanical Information and
+Ecology Network (BIEN) database.  The BIEN database contains cleaned and
 standardized botanical data including occurrence, trait, plot and taxonomic
 data.  This package provides functions that query the BIEN database by
 constructing and executing optimized SQL queries.")

Message #19 received at 50932-done <at> debbugs.gnu.org (full text, mbox):

From: jgart <jgart <at> dismail.de>
To: Ludovic Courtès <ludo <at> gnu.org>
Cc: 50932-done <at> debbugs.gnu.org
Subject: Re: bug#50932: [PATCH] gnu: Add r-bien
Date: Sat, 30 Oct 2021 17:30:15 -0400

On Sat, 30 Oct 2021 19:02:31 +0200 Ludovic Courtès <ludo <at> gnu.org> wrote:
> Hi jgart,
> 
> jgart <jgart <at> dismail.de> skribis:
> 
> > Here is a patch for r-bien.
> >
> > https://cran.r-project.org/web/packages/BIEN/index.html
> 
> Applied both patches with the minor tweak below.
> 
> Thanks!

Thank you!

all best,

jgart

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