Package: guix-patches;
Reported by: Vinicius Monego <monego <at> posteo.net>
Date: Sat, 2 Oct 2021 03:40:01 UTC
Severity: normal
Tags: patch
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guix-patches <at> gnu.org:bug#50956; Package guix-patches.
(Sat, 02 Oct 2021 03:40:01 GMT) Full text and rfc822 format available.Vinicius Monego <monego <at> posteo.net>:guix-patches <at> gnu.org.
(Sat, 02 Oct 2021 03:40:01 GMT) Full text and rfc822 format available.Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
From: Vinicius Monego <monego <at> posteo.net> To: guix-patches <at> gnu.org Cc: Vinicius Monego <monego <at> posteo.net> Subject: [PATCH 0/3] Add Optuna. Date: Sat, 2 Oct 2021 03:39:16 +0000
This patchset adds the Optuna hyperparameter optimization framework. Optuna requires a number of ML frameworks for the whole test suite. I deleted some test files and added comments on missing packages. I packaged Skorch in the series but it's an optional dependency that is only used in the integration tests, which are completely disabled. The latest version of scikit-optimize (0.8.1), another optional dependency, is incompatible with the scikit-learn version in Guix (0.24.x). I am waiting for the next release to package it. The other dependencies are trickier. The executable in bin/ throws an error coming from pygobject, which I couldn't update. While there is a CLI, Optuna is mainly used as a library, that is why I prefix it with python-. Vinicius Monego (3): gnu: Add python-cma. gnu: Add python-skorch. gnu: Add python-optuna. gnu/packages/machine-learning.scm | 166 ++++++++++++++++++++++++++++++ 1 file changed, 167 insertions(+) -- 2.30.2
guix-patches <at> gnu.org:bug#50956; Package guix-patches.
(Sat, 02 Oct 2021 03:43:02 GMT) Full text and rfc822 format available.Message #8 received at 50956 <at> debbugs.gnu.org (full text, mbox):
From: Vinicius Monego <monego <at> posteo.net> To: 50956 <at> debbugs.gnu.org Cc: Vinicius Monego <monego <at> posteo.net> Subject: [PATCH 1/3] gnu: Add python-cma. Date: Sat, 2 Oct 2021 03:41:15 +0000
* gnu/packages/machine-learning.scm (python-cma): New variable.
---
gnu/packages/machine-learning.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index e34de5df43..281c88d6f8 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1150,6 +1150,33 @@ good at identifying feature interactions that are normally overlooked by
standard feature selection algorithms.")
(license license:expat)))
+(define-public python-cma
+ (package
+ (name "python-cma")
+ (version "3.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "cma" version))
+ (sha256
+ (base32 "1ip32lnilbhmv1fyvmmdn5rcf084c0ps4q9dr3cf2ax5wdzhg0rv"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "python" "-m" "cma.test")))))))
+ (propagated-inputs
+ `(("python-numpy" ,python-numpy)))
+ (home-page "https://github.com/CMA-ES/pycma")
+ (synopsis "Python implementation of CMA-ES")
+ (description "@code{pycma} is a Python implementation of CMA-ES and a few
+related numerical optimization tools.")
+ (license license:bsd-3)))
+
(define-public python-cmaes
(package
(name "python-cmaes")
--
2.30.2
guix-patches <at> gnu.org:bug#50956; Package guix-patches.
(Sat, 02 Oct 2021 03:43:02 GMT) Full text and rfc822 format available.Message #11 received at 50956 <at> debbugs.gnu.org (full text, mbox):
From: Vinicius Monego <monego <at> posteo.net> To: 50956 <at> debbugs.gnu.org Cc: Vinicius Monego <monego <at> posteo.net> Subject: [PATCH 2/3] gnu: Add python-skorch. Date: Sat, 2 Oct 2021 03:41:16 +0000
* gnu/packages/machine-learning.scm (python-skorch): New variable.
---
gnu/packages/machine-learning.scm | 42 +++++++++++++++++++++++++++++++
1 file changed, 42 insertions(+)
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 281c88d6f8..fd3e6b2090 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1050,6 +1050,48 @@ number of threads used in the threadpool-backed of common native libraries used
for scientific computing and data science (e.g. BLAS and OpenMP).")
(license license:bsd-3)))
+(define-public python-skorch
+ (package
+ (name "python-skorch")
+ (version "0.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "skorch" version))
+ (sha256
+ (base32 "196hr0q5nw1nzckwanfv27myasayfdxxhx80iv9whm7675rzj44r"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "python" "-m" "pytest" "--pyargs" "skorch" "-k"
+ (string-append
+ ;; Errors because of missing weight and pickle files.
+ "not test_load_cuda_params_to_cpu"
+ " and not test_pickle_load"))))))))
+ (propagated-inputs
+ `(("python-numpy" ,python-numpy)
+ ("python-scikit-learn" ,python-scikit-learn)
+ ("python-scipy" ,python-scipy)
+ ("python-tabulate" ,python-tabulate)
+ ("python-tqdm" ,python-tqdm)))
+ (native-inputs
+ `(("python-flaky" ,python-flaky)
+ ("python-pandas" ,python-pandas)
+ ("python-pytest" ,python-pytest)
+ ("python-pytest-cov" ,python-pytest-cov)
+ ("python-pytorch" ,python-pytorch)))
+ (home-page "https://github.com/skorch-dev/skorch")
+ (synopsis "Scikit-learn compatible neural network library for PyTorch")
+ (description "Skorch is a scikit-learn compatible neural network library
+that wraps PyTorch. It allows to build and train PyTorch models using a
+scikit-learn-like API.")
+ (license license:bsd-3)))
+
(define-public python-pynndescent
(package
(name "python-pynndescent")
--
2.30.2
guix-patches <at> gnu.org:bug#50956; Package guix-patches.
(Sat, 02 Oct 2021 03:43:03 GMT) Full text and rfc822 format available.Message #14 received at 50956 <at> debbugs.gnu.org (full text, mbox):
From: Vinicius Monego <monego <at> posteo.net> To: 50956 <at> debbugs.gnu.org Cc: Vinicius Monego <monego <at> posteo.net> Subject: [PATCH 3/3] gnu: Add python-optuna. Date: Sat, 2 Oct 2021 03:41:17 +0000
* gnu/packages/machine-learning.scm (python-optuna): New variable.
---
gnu/packages/machine-learning.scm | 96 +++++++++++++++++++++++++++++++
1 file changed, 96 insertions(+)
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index fd3e6b2090..3b6f709c4e 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -74,6 +74,7 @@
#:use-module (gnu packages ocaml)
#:use-module (gnu packages onc-rpc)
#:use-module (gnu packages parallel)
+ #:use-module (gnu packages openstack)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages protobuf)
@@ -938,6 +939,101 @@ computing environments.")
(home-page "http://dlib.net")
(license license:boost1.0)))
+(define-public python-optuna
+ (package
+ (name "python-optuna")
+ (version "2.9.1")
+ (source
+ (origin
+ ;; No tests in the PyPI tarball.
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/optuna/optuna")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1fx80qjrkmnvn2mg9fx26qn3sjlwnwqlmkaf6sqhdw79pn6khlpi"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'dont-check-deps
+ ;; Don't check for dependencies we don't have or don't need.
+ ;; TODO: Package and enable some of these.
+ (lambda _
+ (substitute* "setup.py"
+ ((".*allennlp.*") "")
+ ((".*bokeh.*") "")
+ ((".*catalyst.*") "")
+ ((".*chainer.*") "")
+ ((".*fastai.*") "")
+ ((".*keras.*") "")
+ ((".*lightgbm.*") "")
+ ((".*mlflow.*") "")
+ ((".*mxnet.*") "")
+ ((".*plotly.*") "")
+ ((".*scikit-optimize.*") "")
+ ((".*skorch.*") "")
+ ((".*tensorflow.*") "")
+ ((".*torch.*") "")
+ ((".*xgboost.*") ""))))
+ (add-after 'unpack 'disable-some-tests
+ (lambda _
+ ;; Integration tests require most of the dependencies above.
+ (delete-file-recursively "tests/integration_tests")
+ ;; TODO: Requires scikit-optimize.
+ (delete-file "tests/samplers_tests/test_samplers.py")
+ ;; TODO: Requires bokeh.
+ (delete-file "tests/test_dashboard.py")
+ ;; FIXME: "Optuna" executable is not found.
+ (delete-file "tests/test_cli.py")
+ ;; FIXME: Files below require plotly but setup fails to identify
+ ;; plotly version and suggests an upgrade to >= 4.0.0.
+ (delete-file "tests/visualization_tests/test_contour.py")
+ (delete-file (string-append "tests/multi_objective_tests/"
+ "visualization_tests/"
+ "test_pareto_front.py"))
+ (delete-file-recursively "tests/visualization_tests")))
+ (replace 'check
+ (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "python" "-m" "pytest" "-k"
+ ;; redis.exceptions.ResponseError: unknown command 'TIME'.
+ (string-append
+ "not test_retry_failed_trial_callback"
+ " and not test_failed_trial_callback"
+ " and not test_fail_stale_trials_with_optimize"))))))))
+ (propagated-inputs
+ `(("python-alembic" ,python-alembic)
+ ("python-cliff" ,python-cliff)
+ ("python-cmaes" ,python-cmaes)
+ ("python-colorlog" ,python-colorlog)
+ ("python-numpy" ,python-numpy)
+ ("python-packaging" ,python-packaging)
+ ("python-pyyaml" ,python-pyyaml)
+ ("python-scipy" ,python-scipy)
+ ("python-sqlalchemy" ,python-sqlalchemy)
+ ("python-tqdm" ,python-tqdm)))
+ (native-inputs
+ `(("python-cma" ,python-cma)
+ ("python-fakeredis" ,python-fakeredis)
+ ("python-matplotlib" ,python-matplotlib)
+ ("python-mpi4py" ,python-mpi4py)
+ ("python-pandas" ,python-pandas)
+ ("python-pytest" ,python-pytest)
+ ("python-redis" ,python-redis)
+ ("python-scikit-learn" ,python-scikit-learn)
+ ("which" ,which)))
+ (home-page "https://optuna.org/")
+ (synopsis "Hyperparameter optimization framework")
+ (description "Optuna is an automatic hyperparameter optimization software
+framework, particularly designed for machine learning. It features an
+imperative, @emph{define-by-run} style user API. Thanks to it, the code
+written with Optuna enjoys high modularity, and the user of Optuna can
+dynamically construct the search spaces for the hyperparameters.")
+ (license license:expat)))
+
(define-public python-scikit-learn
(package
(name "python-scikit-learn")
--
2.30.2
guix-patches <at> gnu.org:bug#50956; Package guix-patches.
(Wed, 13 Oct 2021 02:01:01 GMT) Full text and rfc822 format available.Message #17 received at 50956 <at> debbugs.gnu.org (full text, mbox):
From: Vinicius Monego <monego <at> posteo.net> To: 50956 <at> debbugs.gnu.org Cc: Vinicius Monego <monego <at> posteo.net> Subject: [PATCH v2 1/4] gnu: Add python-scikit-optimize. Date: Wed, 13 Oct 2021 02:00:32 +0000
* gnu/packages/machine-learning.scm (python-scikit-optimize): New variable.
---
scikit-optimize 0.9.0 was released today, added it as a patch in the series.
gnu/packages/machine-learning.scm | 38 +++++++++++++++++++++++++++++++
1 file changed, 38 insertions(+)
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 029422677a..478e9548e9 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1218,6 +1218,44 @@ main intended application of Autograd is gradient-based optimization.")
(define-public python2-autograd
(package-with-python2 python-autograd))
+(define-public python-scikit-optimize
+ (package
+ (name "python-scikit-optimize")
+ (version "0.9.0")
+ (source
+ (origin
+ (method git-fetch) ; no tests in PyPI tarball
+ (uri (git-reference
+ (url "https://github.com/scikit-optimize/scikit-optimize")
+ (commit (string-append "v" version))))
+ (sha256
+ (base32 "0hsq6pmryimxc275yrcy4bv217bx7ma6rz0q6m4138bv4zgq18d1"))
+ (file-name (git-file-name name version))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "python" "-m" "pytest")))))))
+ (native-inputs
+ `(("python-pytest" ,python-pytest)))
+ (propagated-inputs
+ `(("python-joblib" ,python-joblib)
+ ("python-numpy" ,python-numpy)
+ ("python-pyaml" ,python-pyaml)
+ ("python-scikit-learn" ,python-scikit-learn)
+ ("python-scipy" ,python-scipy)))
+ (home-page "https://scikit-optimize.github.io/")
+ (synopsis "Sequential model-based optimization")
+ (description
+ "Scikit-Optimize, or @code{skopt}, is a library to minimize (very)
+expensive and noisy black-box functions. It implements several methods
+for sequential model-based optimization.")
+ (license license:bsd-3)))
+
(define-public lightgbm
(package
(name "lightgbm")
--
2.30.2
guix-patches <at> gnu.org:bug#50956; Package guix-patches.
(Wed, 13 Oct 2021 02:02:02 GMT) Full text and rfc822 format available.Message #20 received at 50956 <at> debbugs.gnu.org (full text, mbox):
From: Vinicius Monego <monego <at> posteo.net> To: 50956 <at> debbugs.gnu.org Cc: Vinicius Monego <monego <at> posteo.net> Subject: [PATCH v2 2/4] gnu: Add python-cma. Date: Wed, 13 Oct 2021 02:00:33 +0000
* gnu/packages/machine-learning.scm (python-cma): New variable.
---
gnu/packages/machine-learning.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 478e9548e9..6b7736702a 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1150,6 +1150,33 @@ good at identifying feature interactions that are normally overlooked by
standard feature selection algorithms.")
(license license:expat)))
+(define-public python-cma
+ (package
+ (name "python-cma")
+ (version "3.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "cma" version))
+ (sha256
+ (base32 "1ip32lnilbhmv1fyvmmdn5rcf084c0ps4q9dr3cf2ax5wdzhg0rv"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "python" "-m" "cma.test")))))))
+ (propagated-inputs
+ `(("python-numpy" ,python-numpy)))
+ (home-page "https://github.com/CMA-ES/pycma")
+ (synopsis "Python implementation of CMA-ES")
+ (description "@code{pycma} is a Python implementation of CMA-ES and a few
+related numerical optimization tools.")
+ (license license:bsd-3)))
+
(define-public python-cmaes
(package
(name "python-cmaes")
--
2.30.2
guix-patches <at> gnu.org:bug#50956; Package guix-patches.
(Wed, 13 Oct 2021 02:02:02 GMT) Full text and rfc822 format available.Message #23 received at 50956 <at> debbugs.gnu.org (full text, mbox):
From: Vinicius Monego <monego <at> posteo.net> To: 50956 <at> debbugs.gnu.org Cc: Vinicius Monego <monego <at> posteo.net> Subject: [PATCH v2 3/4] gnu: Add python-skorch. Date: Wed, 13 Oct 2021 02:00:34 +0000
* gnu/packages/machine-learning.scm (python-skorch): New variable.
---
Swapped order of native and propagated inputs.
gnu/packages/machine-learning.scm | 42 +++++++++++++++++++++++++++++++
1 file changed, 42 insertions(+)
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 6b7736702a..09767584bb 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1050,6 +1050,48 @@ number of threads used in the threadpool-backed of common native libraries used
for scientific computing and data science (e.g. BLAS and OpenMP).")
(license license:bsd-3)))
+(define-public python-skorch
+ (package
+ (name "python-skorch")
+ (version "0.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "skorch" version))
+ (sha256
+ (base32 "196hr0q5nw1nzckwanfv27myasayfdxxhx80iv9whm7675rzj44r"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "python" "-m" "pytest" "--pyargs" "skorch" "-k"
+ (string-append
+ ;; Errors because of missing weight and pickle files.
+ "not test_load_cuda_params_to_cpu"
+ " and not test_pickle_load"))))))))
+ (native-inputs
+ `(("python-flaky" ,python-flaky)
+ ("python-pandas" ,python-pandas)
+ ("python-pytest" ,python-pytest)
+ ("python-pytest-cov" ,python-pytest-cov)
+ ("python-pytorch" ,python-pytorch)))
+ (propagated-inputs
+ `(("python-numpy" ,python-numpy)
+ ("python-scikit-learn" ,python-scikit-learn)
+ ("python-scipy" ,python-scipy)
+ ("python-tabulate" ,python-tabulate)
+ ("python-tqdm" ,python-tqdm)))
+ (home-page "https://github.com/skorch-dev/skorch")
+ (synopsis "Scikit-learn compatible neural network library for PyTorch")
+ (description "Skorch is a scikit-learn compatible neural network library
+that wraps PyTorch. It allows to build and train PyTorch models using a
+scikit-learn-like API.")
+ (license license:bsd-3)))
+
(define-public python-pynndescent
(package
(name "python-pynndescent")
--
2.30.2
guix-patches <at> gnu.org:bug#50956; Package guix-patches.
(Wed, 13 Oct 2021 02:02:03 GMT) Full text and rfc822 format available.Message #26 received at 50956 <at> debbugs.gnu.org (full text, mbox):
From: Vinicius Monego <monego <at> posteo.net> To: 50956 <at> debbugs.gnu.org Cc: Vinicius Monego <monego <at> posteo.net> Subject: [PATCH v2 4/4] gnu: Add python-optuna. Date: Wed, 13 Oct 2021 02:00:35 +0000
* gnu/packages/machine-learning.scm (python-optuna): New variable.
---
Updated to 2.10.0, added scikit-optimize to native-inputs don't delete the test file that requires it. Swapped order of native and propagated inputs.
gnu/packages/machine-learning.scm | 93 +++++++++++++++++++++++++++++++
1 file changed, 93 insertions(+)
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 09767584bb..44033cfb77 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -74,6 +74,7 @@
#:use-module (gnu packages ocaml)
#:use-module (gnu packages onc-rpc)
#:use-module (gnu packages parallel)
+ #:use-module (gnu packages openstack)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages protobuf)
@@ -938,6 +939,98 @@ computing environments.")
(home-page "http://dlib.net")
(license license:boost1.0)))
+(define-public python-optuna
+ (package
+ (name "python-optuna")
+ (version "2.10.0")
+ (source
+ (origin
+ (method git-fetch) ; no tests in PyPI tarball
+ (uri (git-reference
+ (url "https://github.com/optuna/optuna")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0fha0pwxq6n3mbpvpz3vk8hh61zqncj5cnq063kzfl5d8rd48vcd"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'dont-check-deps
+ ;; Don't check for test dependencies we don't have.
+ ;; TODO: Package and enable some of these.
+ (lambda _
+ (substitute* "setup.py"
+ ((".*allennlp.*") "")
+ ((".*bokeh.*") "")
+ ((".*catalyst.*") "")
+ ((".*chainer.*") "")
+ ((".*fastai.*") "")
+ ((".*keras.*") "")
+ ((".*lightgbm.*") "")
+ ((".*mlflow.*") "")
+ ((".*mxnet.*") "")
+ ((".*plotly.*") "")
+ ((".*skorch.*") "")
+ ((".*tensorflow.*") "")
+ ((".*torch.*") "")
+ ((".*xgboost.*") ""))))
+ (add-after 'unpack 'disable-some-tests
+ (lambda _
+ ;; Integration tests require most of the dependencies above.
+ (delete-file-recursively "tests/integration_tests")
+ ;; TODO: Requires bokeh.
+ (delete-file "tests/test_dashboard.py")
+ ;; FIXME: "Optuna" executable is not found.
+ (delete-file "tests/test_cli.py")
+ ;; FIXME: Files below require plotly but setup fails to identify
+ ;; plotly version and suggests an upgrade to >= 4.0.0.
+ (delete-file "tests/visualization_tests/test_contour.py")
+ (delete-file (string-append "tests/multi_objective_tests/"
+ "visualization_tests/"
+ "test_pareto_front.py"))
+ (delete-file-recursively "tests/visualization_tests")))
+ (replace 'check
+ (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "python" "-m" "pytest" "-k"
+ ;; redis.exceptions.ResponseError: unknown command 'TIME'.
+ (string-append
+ "not test_retry_failed_trial_callback"
+ " and not test_failed_trial_callback"
+ " and not test_fail_stale_trials_with_optimize"))))))))
+ (native-inputs
+ `(("python-cma" ,python-cma)
+ ("python-fakeredis" ,python-fakeredis)
+ ("python-matplotlib" ,python-matplotlib)
+ ("python-mpi4py" ,python-mpi4py)
+ ("python-pandas" ,python-pandas)
+ ("python-pytest" ,python-pytest)
+ ("python-redis" ,python-redis)
+ ("python-scikit-learn" ,python-scikit-learn)
+ ("python-scikit-optimize" ,python-scikit-optimize)
+ ("which" ,which)))
+ (propagated-inputs
+ `(("python-alembic" ,python-alembic)
+ ("python-cliff" ,python-cliff)
+ ("python-cmaes" ,python-cmaes)
+ ("python-colorlog" ,python-colorlog)
+ ("python-numpy" ,python-numpy)
+ ("python-packaging" ,python-packaging)
+ ("python-pyyaml" ,python-pyyaml)
+ ("python-scipy" ,python-scipy)
+ ("python-sqlalchemy" ,python-sqlalchemy)
+ ("python-tqdm" ,python-tqdm)))
+ (home-page "https://optuna.org/")
+ (synopsis "Hyperparameter optimization framework")
+ (description "Optuna is an automatic hyperparameter optimization software
+framework, particularly designed for machine learning. It features an
+imperative, @emph{define-by-run} style user API. Thanks to it, the code
+written with Optuna enjoys high modularity, and the user of Optuna can
+dynamically construct the search spaces for the hyperparameters.")
+ (license license:expat)))
+
(define-public python-scikit-learn
(package
(name "python-scikit-learn")
--
2.30.2
GNU bug tracking system
Copyright (C) 1999 Darren O. Benham,
1997,2003 nCipher Corporation Ltd,
1994-97 Ian Jackson.