GNU bug report logs -
#52123
[PATCH] gnu: Add r-derfinderhelper.
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Reported by: zimoun <zimon.toutoune <at> gmail.com>
Date: Fri, 26 Nov 2021 12:43:01 UTC
Severity: normal
Tags: patch
Done: Ludovic Courtès <ludo <at> gnu.org>
Bug is archived. No further changes may be made.
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Report forwarded
to
guix-patches <at> gnu.org
:
bug#52123
; Package
guix-patches
.
(Fri, 26 Nov 2021 12:43:01 GMT)
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Acknowledgement sent
to
zimoun <zimon.toutoune <at> gmail.com>
:
New bug report received and forwarded. Copy sent to
guix-patches <at> gnu.org
.
(Fri, 26 Nov 2021 12:43:01 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/bioconductor.scm (r-derfinderhelper): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a66cc22fff..3dc8c61c4e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1610,6 +1610,33 @@ (define-public r-delayedarray
@code{Matrix} objects, and ordinary arrays and data frames.")
(license license:artistic2.0)))
+(define-public r-derfinderhelper
+ (package
+ (name "r-derfinderhelper")
+ (version "1.28.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "derfinderHelper" version))
+ (sha256
+ (base32 "06x0wy2wzpngak1pnrj2p0xzlx1nbcz0hs3p9q5ic6ib2rgwrh35"))))
+ (properties `((upstream-name . "derfinderHelper")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-iranges" ,r-iranges)
+ ("r-matrix" ,r-matrix)
+ ("r-s4vectors" ,r-s4vectors)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/leekgroup/derfinderHelper")
+ (synopsis "Helper for derfinder")
+ (description
+ "This package speeds up the derfinder package when using multiple cores.
+It is particularly useful when using BiocParallel and it helps reduce the time
+spent loading the full derfinder package when running the F-statistics
+calculation in parallel.")
+ (license license:artistic2.0)))
+
(define-public r-bluster
(package
(name "r-bluster")
--
2.33.1
Reply sent
to
Ludovic Courtès <ludo <at> gnu.org>
:
You have taken responsibility.
(Fri, 26 Nov 2021 12:54:02 GMT)
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Notification sent
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zimoun <zimon.toutoune <at> gmail.com>
:
bug acknowledged by developer.
(Fri, 26 Nov 2021 12:54:02 GMT)
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Message #10 received at 52123-done <at> debbugs.gnu.org (full text, mbox):
Hi!
zimoun <zimon.toutoune <at> gmail.com> skribis:
> * gnu/packages/bioconductor.scm (r-derfinderhelper): New variable.
Thanks for this wonderful package, pushed!
https://git.savannah.gnu.org/cgit/guix.git/commit/?id=128fd2ab594b25974a67fc7217107b8b83efda4d
Ludo’.
PS: Bonjour aux participant·es du Café Guix. :-)
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
to
internal_control <at> debbugs.gnu.org
.
(Sat, 25 Dec 2021 12:24:06 GMT)
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This bug report was last modified 2 years and 85 days ago.
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