GNU bug report logs - #52696
[PATCH 00/12] Update Orange.

Previous Next

To add a comment to this bug, you must first unarchive it, by sending
a message to control AT debbugs.gnu.org, with unarchive 52696 in the body.
You can then email your comments to 52696 AT debbugs.gnu.org in the normal way.

Toggle the display of automated, internal messages from the tracker.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: guix-patches <at> gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH 00/12] Update Orange.
Date: Tue, 21 Dec 2021 04:45:20 +0000

Vinicius Monego (12):
  gnu: python-anyqt: Update to 0.0.13.
  gnu: python-qasync: Update to 0.22.0.
  gnu: Add python-pytest-pydocstyle.
  gnu: python-pytest-pycodestyle: Update to 2.2.0.
  gnu: python-dictdiffer: Update to 0.9.0.
  gnu: python-pynndescent: Update to 0.5.5.
  gnu: python-opentsne: Update to 0.6.1.
  gnu: python-qtconsole: Update to 4.7.7.
  gnu: python-qtconsole: Enable tests.
  gnu: python-orange-canvas-core: Update to 0.1.24.
  gnu: python-orange-widget-base: Update to 4.16.1.
  gnu: orange: Update to 3.31.0.

 gnu/packages/machine-learning.scm | 33 +++++++++-----
 gnu/packages/orange.scm           | 35 +++++++--------
 gnu/packages/python-check.scm     | 29 +++++++++++-
 gnu/packages/python-xyz.scm       | 73 ++++++++++++++++---------------
 4 files changed, 102 insertions(+), 68 deletions(-)


base-commit: 86d6c6053c7d1c7a82c83f0daf0f5e09b1ecfb63
-- 
2.30.2

Message #8 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH 01/12] gnu: python-anyqt: Update to 0.0.13.
Date: Tue, 21 Dec 2021 04:46:32 +0000

* gnu/packages/python-xyz.scm (python-anyqt): Update to 0.0.13.
[arguments]<#:phases>: Don't return #t.
---
 gnu/packages/python-xyz.scm | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 5e26fe724f..ebf2956c5c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -14058,13 +14058,13 @@ ISO 8859, etc.).")
 (define-public python-anyqt
   (package
     (name "python-anyqt")
-    (version "0.0.11")
+    (version "0.0.13")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "AnyQt" version))
        (sha256
-        (base32 "0gl2czirzjvhbq963i2awxp8kwbc1grh67lpcwfipyn9w3kdwdj4"))))
+        (base32 "0z7myf0mp1qx4gza6ncqyq9whk67vblmh9n3klk19dv4aakjml2f"))))
     (build-system python-build-system)
     (arguments
      `(#:tests? #f ;there are no tests
@@ -14074,8 +14074,7 @@ ISO 8859, etc.).")
            ;; Delete files related to other operating systems.
            (lambda _
              (delete-file "AnyQt/QtMacExtras.py")
-             (delete-file "AnyQt/QtWinExtras.py")
-             #t)))))
+             (delete-file "AnyQt/QtWinExtras.py"))))))
     (home-page "https://github.com/ales-erjavec/anyqt")
     (synopsis "PyQt4/PyQt5 compatibility layer")
     (description "AnyQt is a PyQt4/PyQt5 compatibility layer.")
-- 
2.30.2

Message #11 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH 02/12] gnu: python-qasync: Update to 0.22.0.
Date: Tue, 21 Dec 2021 04:46:33 +0000

* gnu/packages/python-xyz.scm (python-qasync): Update to 0.22.0.
[arguments]<#:phases>: Don't return #t.
---
 gnu/packages/python-xyz.scm | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index ebf2956c5c..fb29708c02 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -14135,7 +14135,7 @@ applications.")
 (define-public python-qasync
   (package
     (name "python-qasync")
-    (version "0.15.0")
+    (version "0.22.0")
     (source
      (origin
        ;; There are no tests in the PyPI tarball.
@@ -14145,7 +14145,7 @@ applications.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0va9h6v102d7mxz608banjc0l0v02dq3ywhr5i4nqaxx3qkazc2l"))))
+        (base32 "1q9cllrwf94whr0f6mipa0hdq1rcyqvklwx19g35g2dav8f3xkjl"))))
     (build-system python-build-system)
     (arguments
      `(#:test-target "pytest"
@@ -14153,8 +14153,7 @@ applications.")
        (modify-phases %standard-phases
          (add-before 'check 'set-qpa
            (lambda _
-             (setenv "QT_QPA_PLATFORM" "offscreen")
-             #t)))))
+             (setenv "QT_QPA_PLATFORM" "offscreen"))))))
     (native-inputs
      (list python-pytest python-pytest-runner))
     (propagated-inputs
-- 
2.30.2

Message #14 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH 03/12] gnu: Add python-pytest-pydocstyle.
Date: Tue, 21 Dec 2021 04:46:34 +0000

* gnu/packages/python-check.scm (python-pytest-pydocstyle): New variable.
---
 gnu/packages/python-check.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index e94e2d0011..74e8537aea 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -677,6 +677,31 @@ framework and makes it easy to undo any monkey patching.  The fixtures are:
 in Pytest.")
     (license license:bsd-3)))
 
+(define-public python-pytest-pydocstyle
+  (package
+    (name "python-pytest-pydocstyle")
+    (version "2.2.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/henry0312/pytest-pydocstyle")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0w6fivz4nb4b70wzmi5sk17qs9pd05rnh03fmch6v00r3dmfpk39"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:tests? #f)) ; test requires the package itself
+    (propagated-inputs
+     `(("python-pydocstyle" ,python-pydocstyle)
+       ("python-pytest" ,python-pytest))) ; apparently required
+    (home-page "https://github.com/henry0312/pytest-pydocstyle")
+    (synopsis "Pytest plugin to run @command{pydocstyle}")
+    (description "This package provides a Pytest plugin to run
+@command{pydocstyle}.")
+    (license license:expat)))
+
 (define-public python-covdefaults
   (package
     (name "python-covdefaults")
-- 
2.30.2

Message #17 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH 04/12] gnu: python-pytest-pycodestyle: Update to 2.2.0.
Date: Tue, 21 Dec 2021 04:46:35 +0000

* gnu/packages/python-check.scm (python-pytest-pycodestyle): Update to 2.2.0.
---
 gnu/packages/python-check.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 74e8537aea..4638c55746 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -1009,14 +1009,14 @@ framework.")
 (define-public python-pytest-pycodestyle
   (package
     (name "python-pytest-pycodestyle")
-    (version "2.0.0")               ;later versions require python-pytest~=5.4
+    (version "2.2.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "pytest-pycodestyle" version))
        (sha256
         (base32
-         "02i5gl7pm9cwxk15sn29inz3n8flpj1r3p1l110h43f2na5w8h7z"))))
+         "1clyjypn93hwvz17f4i6n2688835d4y8qsq2aw17d6fkbqiy8mg7"))))
     (build-system python-build-system)
     (propagated-inputs
      (list python-pycodestyle))
-- 
2.30.2

Message #20 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH 05/12] gnu: python-dictdiffer: Update to 0.9.0.
Date: Tue, 21 Dec 2021 04:46:36 +0000

* gnu/packages/python-xyz.scm (python-dictdiffer): Update to 0.9.0.
[source]: Make some cosmetic changes.
[arguments]: Override 'check phase.
[native-inputs]: Remove python-check-manifest, python-coverage, python-isort,
python-pytest-cache, python-pytest-pep8, python-tox. Add python-pytest-isort,
python-pytest-pycodestyle, python-pytest-pydocstyle.
---
 gnu/packages/python-xyz.scm | 35 ++++++++++++++++++++---------------
 1 file changed, 20 insertions(+), 15 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index fb29708c02..18ca99cd8b 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -25094,27 +25094,32 @@ cryptographically signed ones).")
 (define-public python-dictdiffer
   (package
     (name "python-dictdiffer")
-    (version "0.8.1")
-    (source (origin
-              (method url-fetch)
-              (uri (pypi-uri "dictdiffer" version))
-              (sha256
-               (base32
-                "1lk3qmy1hkaphk4n7ayfk0wl6m2yvd6r7qkam6yncqfzgkbc1phs"))))
+    (version "0.9.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "dictdiffer" version))
+       (sha256
+        (base32 "0y3mk74qm2q9hsm37892i1wzn8bbdrvbs4nmnvqwq4z6pxgwzfhp"))))
     (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (replace 'check
+           (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+             (when tests?
+               (add-installed-pythonpath inputs outputs)
+               (invoke "python" "-m" "pytest")))))))
     (native-inputs
-     (list python-check-manifest
-           python-coverage
-           python-isort
-           python-mock
+     (list python-mock
            python-pydocstyle
-           python-pytest-cache
            python-pytest-cov
-           python-pytest-pep8
+           python-pytest-isort
+           python-pytest-pycodestyle
+           python-pytest-pydocstyle
            python-pytest-runner
            python-pytest
-           python-setuptools-scm
-           python-tox))
+           python-setuptools-scm))
     (home-page "https://github.com/inveniosoftware/dictdiffer")
     (synopsis "Diff and patch Python dictionary objects")
     (description
-- 
2.30.2

Message #23 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH 06/12] gnu: python-pynndescent: Update to 0.5.5.
Date: Tue, 21 Dec 2021 04:46:37 +0000

* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.5.
[arguments]<#:phases>: Override 'check phase.
[native-inputs]: Remove python-nose. Add python-pytest.
---
 gnu/packages/machine-learning.scm | 14 +++++++++++---
 1 file changed, 11 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 1cd2fd1308..26b710e5d7 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1057,16 +1057,24 @@ for scientific computing and data science (e.g. BLAS and OpenMP).")
 (define-public python-pynndescent
   (package
     (name "python-pynndescent")
-    (version "0.5.2")
+    (version "0.5.5")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "pynndescent" version))
        (sha256
-        (base32 "0w87c2v0li2rdbx6qfc2lb6y6bxpdy3jwfgzfs1kcr4d1chj5zfr"))))
+        (base32 "10pqqqc3jkpw03cyzy04slxmpgyhqnlgbyk0c1cv7kqr5d0zhzbs"))))
     (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (replace 'check
+           (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+             (when tests?
+               (add-installed-pythonpath inputs outputs)
+               (invoke "python" "-m" "pytest" "--pyargs" "pynndescent")))))))
     (native-inputs
-     (list python-nose))
+     (list python-pytest))
     (propagated-inputs
      (list python-joblib python-llvmlite python-numba python-scikit-learn
            python-scipy))
-- 
2.30.2

Message #26 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH 07/12] gnu: python-opentsne: Update to 0.6.1.
Date: Tue, 21 Dec 2021 04:46:38 +0000

* gnu/packages/machine-learning.scm (python-opentsne): Update to 0.6.1.
[source]<file-name>: Use git-file-name.
[arguments]<#:phases>: Don't return #t. Add 'skip-test phase after 'unpack to
skip a failing test.
---
 gnu/packages/machine-learning.scm | 19 ++++++++++---------
 1 file changed, 10 insertions(+), 9 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 26b710e5d7..ec5adab09c 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1088,17 +1088,16 @@ for k-neighbor-graph construction and approximate nearest neighbor search.")
 (define-public python-opentsne
   (package
     (name "python-opentsne")
-    (version "0.5.2")
+    (version "0.6.1")
     (source
      (origin
-       ;; No tests in the PyPI tarball.
-       (method git-fetch)
+       (method git-fetch) ; no tests in PyPI release
        (uri (git-reference
              (url "https://github.com/pavlin-policar/openTSNE")
              (commit (string-append "v" version))))
-       (file-name (string-append name "-" version "-checkout"))
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "1hl42wmafydk4fxdx05l180k3canmqw8h9r20fsqq2aq440b09gh"))))
+        (base32 "124nid27lfq1ipfjd2gkynqcmb4khisjb4r05jv42ckfkk4dbsxs"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
@@ -1106,13 +1105,15 @@ for k-neighbor-graph construction and approximate nearest neighbor search.")
          ;; Benchmarks require the 'macosko2015' data files.
          (add-after 'unpack 'delete-benchmark
            (lambda _
-             (delete-file-recursively "benchmarks")
-             #t))
+             (delete-file-recursively "benchmarks")))
+         (add-after 'unpack 'skip-test
+           (lambda _ ;; TODO: figure out why this test fails.
+             (substitute* "tests/test_correctness.py"
+               (("def test_iris\\(self\\)") "def _test_iris(self)"))))
          ;; Numba needs a writable dir to cache functions.
          (add-before 'check 'set-numba-cache-dir
            (lambda _
-             (setenv "NUMBA_CACHE_DIR" "/tmp")
-             #t)))))
+             (setenv "NUMBA_CACHE_DIR" "/tmp"))))))
     (native-inputs
      (list python-cython))
     (inputs
-- 
2.30.2

Message #29 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH 08/12] gnu: python-qtconsole: Update to 4.7.7.
Date: Tue, 21 Dec 2021 04:46:39 +0000

* gnu/packages/python-xyz.scm (python-qtconsole): Update to 4.7.7.
[source]: Make some cosmetic changes.
[arguments]<#:phases>: Don't return #t.
[propagated-inputs]: Remove python-ipython. Add python-ipython-genutils,
python-jupyter-client, python-jupyter-core, python-pygments, python-pyqt,
python-pyzmq, python-qtpy, python-traitlets.
---
 gnu/packages/python-xyz.scm | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 18ca99cd8b..40f7a7c7ad 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -12219,14 +12219,13 @@ Jupyter kernels such as IJulia and IRKernel.")
 (define-public python-qtconsole
   (package
     (name "python-qtconsole")
-    (version "4.4.3")
+    (version "4.7.7")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "qtconsole" version))
        (sha256
-        (base32
-         "1b03n1ixzscm0jw97l4dq5iy4fslnqxq5bb8287xb7n2a1gs26xw"))))
+        (base32 "013qgpsm8jzcz3prhq7sxs36l8f7fgagmn3xa010gfhxf7cfldpj"))))
     (build-system python-build-system)
     (arguments
      ;; XXX: Tests are disabled, because this package needs python-ipython 7,
@@ -12239,10 +12238,11 @@ Jupyter kernels such as IJulia and IRKernel.")
        (modify-phases %standard-phases
          (add-before 'check 'pre-check
            (lambda _
-             (setenv "QT_QPA_PLATFORM" "offscreen")
-             #t)))))
+             (setenv "QT_QPA_PLATFORM" "offscreen"))))))
     (propagated-inputs
-     (list python-ipykernel python-ipython python-pyqt))
+     (list python-ipykernel python-ipython-genutils python-jupyter-client
+           python-jupyter-core python-pygments python-pyqt python-pyzmq
+           python-qtpy python-traitlets))
     (native-inputs
      (list python-pytest))
     (home-page "https://jupyter.org")
-- 
2.30.2

Message #32 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH 09/12] gnu: python-qtconsole: Enable tests.
Date: Tue, 21 Dec 2021 04:46:40 +0000

* gnu/packages/python-xyz.scm (python-qtconsole)[arguments]: Remove #:tests?.
<#:phases>: Set HOME and skip a failing test in the 'pre-check phase.
[native-inputs]: Add python-flaky.
---
 gnu/packages/python-xyz.scm | 16 +++++++---------
 1 file changed, 7 insertions(+), 9 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 40f7a7c7ad..d421369666 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -12228,23 +12228,21 @@ Jupyter kernels such as IJulia and IRKernel.")
         (base32 "013qgpsm8jzcz3prhq7sxs36l8f7fgagmn3xa010gfhxf7cfldpj"))))
     (build-system python-build-system)
     (arguments
-     ;; XXX: Tests are disabled, because this package needs python-ipython 7,
-     ;; but we only have the LTS version 5.x.  This means that there might be
-     ;; runtime errors, but since this is a dependency of the Jupyter package,
-     ;; and Jupyter can be used without the qtconsole we can overlook this for
-     ;; now.
-     `(#:tests? #f
-       #:phases
+     `(#:phases
        (modify-phases %standard-phases
          (add-before 'check 'pre-check
            (lambda _
-             (setenv "QT_QPA_PLATFORM" "offscreen"))))))
+             (setenv "QT_QPA_PLATFORM" "offscreen")
+             (setenv "HOME" "/tmp")
+             ;; FIXME: skip a failing test.
+             (substitute* "qtconsole/tests/test_jupyter_widget.py"
+               (("def test_other_output") "def _test_other_output")))))))
     (propagated-inputs
      (list python-ipykernel python-ipython-genutils python-jupyter-client
            python-jupyter-core python-pygments python-pyqt python-pyzmq
            python-qtpy python-traitlets))
     (native-inputs
-     (list python-pytest))
+     (list python-flaky python-pytest))
     (home-page "https://jupyter.org")
     (synopsis "Jupyter Qt console")
     (description "This package provides a Qt-based console for Jupyter with
-- 
2.30.2

Message #35 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH 10/12] gnu: python-orange-canvas-core: Update to 0.1.24.
Date: Tue, 21 Dec 2021 04:46:41 +0000

* gnu/packages/orange.scm (python-orange-canvas-core): Update to 0.1.24.
[arguments]<#:phases>: Don't return #t.
[propagated-inputs]: Remove python-pyqt.
---
 gnu/packages/orange.scm | 8 +++-----
 1 file changed, 3 insertions(+), 5 deletions(-)

diff --git a/gnu/packages/orange.scm b/gnu/packages/orange.scm
index efdafe3d45..615e7cec68 100644
--- a/gnu/packages/orange.scm
+++ b/gnu/packages/orange.scm
@@ -34,13 +34,13 @@
 (define-public python-orange-canvas-core
   (package
     (name "python-orange-canvas-core")
-    (version "0.1.19")
+    (version "0.1.24")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "orange-canvas-core" version))
        (sha256
-        (base32 "03wav2msfm32y8zwq69v1v6qyh1ld76xla2z60avf49yhbwjgwal"))))
+        (base32 "0m3dszdkc5bc80ahcvrqxz8jahs33js9cx1mc6rc9ihysq2ddnfz"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
@@ -51,15 +51,13 @@
              (substitute* "orangecanvas/application/tests/test_mainwindow.py"
                (("test_help_requests") "_test_help_requests"))
              (setenv "HOME" "/tmp")
-             (setenv "QT_QPA_PLATFORM" "offscreen")
-             #t)))))
+             (setenv "QT_QPA_PLATFORM" "offscreen"))))))
     (propagated-inputs
      (list python-anyqt
            python-cachecontrol
            python-commonmark
            python-dictdiffer
            python-docutils
-           python-pyqt
            python-qasync
            python-requests))
     (home-page "https://github.com/biolab/orange-canvas-core")
-- 
2.30.2

Message #38 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH 11/12] gnu: python-orange-widget-base: Update to 4.16.1.
Date: Tue, 21 Dec 2021 04:46:42 +0000

* gnu/packages/orange.scm (python-orange-widget-base): Update to 4.16.1.
[arguments]<#:phases>: Don't return #t.
[propagated-inputs]: Add python-typing-extensions.
---
 gnu/packages/orange.scm | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

diff --git a/gnu/packages/orange.scm b/gnu/packages/orange.scm
index 615e7cec68..710be87cb0 100644
--- a/gnu/packages/orange.scm
+++ b/gnu/packages/orange.scm
@@ -71,13 +71,13 @@ data-mining application.")
 (define-public python-orange-widget-base
   (package
     (name "python-orange-widget-base")
-    (version "4.12.0")
+    (version "4.16.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "orange-widget-base" version))
        (sha256
-        (base32 "13sy3s8rdqs3i3ghixljpqvnfz81qmbb0kqlasw39zvf39qc22kz"))))
+        (base32 "0a0sijsvzijj71sxq8ckpgz59z1cq9sxn4fya3z23ibdzjzwrsi7"))))
     (build-system python-build-system)
     (arguments
      `(;; unittest fails to load one test, all other tests are passing:
@@ -88,11 +88,10 @@ data-mining application.")
          (add-before 'check 'check-setup
            (lambda _
              (setenv "HOME" "/tmp")
-             (setenv "QT_QPA_PLATFORM" "offscreen")
-             #t)))))
+             (setenv "QT_QPA_PLATFORM" "offscreen"))))))
     (propagated-inputs
      (list python-anyqt python-matplotlib python-orange-canvas-core
-           python-pyqtgraph))
+           python-pyqtgraph python-typing-extensions))
     (home-page "https://github.com/biolab/orange-widget-base")
     (synopsis "Base Widget for Orange Canvas")
     (description
-- 
2.30.2

Message #41 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH 12/12] gnu: orange: Update to 3.31.0.
Date: Tue, 21 Dec 2021 04:46:43 +0000

* gnu/packages/orange.scm (orange): Update to 3.31.0.
[arguments]<#:phases>: Don't return #t. Adjust file name for substitution in
'preparations. Rename 'set-HOME to 'pre-check. Set QT_QPA_PLATFORM in
'pre-check.
[inputs]: Add python-pygments, python-qtconsole.
---
 gnu/packages/orange.scm | 18 ++++++++++--------
 1 file changed, 10 insertions(+), 8 deletions(-)

diff --git a/gnu/packages/orange.scm b/gnu/packages/orange.scm
index 710be87cb0..34d181d222 100644
--- a/gnu/packages/orange.scm
+++ b/gnu/packages/orange.scm
@@ -102,13 +102,13 @@ GUI based workflow.  It is primarily used in the Orange framework.")
 (define-public orange
   (package
     (name "orange")
-    (version "3.28.0")
+    (version "3.31.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "Orange3" version))
        (sha256
-        (base32 "1ac4xjjkx06z10hl7k0zh1z3qhkl5vng15l9jkpkmck9spinbzil"))))
+        (base32 "15xf7v9kc9gz6j9h709168hxq9kdszk49l8c9ic70fgfn2c4rndk"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
@@ -125,11 +125,12 @@ GUI based workflow.  It is primarily used in the Orange framework.")
              ;; We use a correct version of PyQtWebEngine, but the build scripts
              ;; consider it incorrect anyways. Remove the constraint entirely to
              ;; work around this bug.
-             (substitute* "requirements-gui.txt" (("PyQtWebEngine>=5.12") ""))
-             #t))
-         (add-before 'check 'set-HOME
+             (substitute* "requirements-pyqt.txt" (("PyQtWebEngine>=5.12") ""))))
+         (add-before 'check 'pre-check
            ;; Tests need a writable home.
-           (lambda _ (setenv "HOME" "/tmp") #t))
+           (lambda _
+             (setenv "HOME" "/tmp")
+             (setenv "QT_QPA_PLATFORM" "offscreen")))
          (add-after 'install 'wrap-executable
            ;; Ensure that icons are found at runtime.
            (lambda* (#:key inputs outputs #:allow-other-keys)
@@ -137,8 +138,7 @@ GUI based workflow.  It is primarily used in the Orange framework.")
                (wrap-program (string-append out "/bin/orange-canvas")
                  `("QT_PLUGIN_PATH" prefix
                    ,(list (string-append (assoc-ref inputs "qtsvg")
-                                         "/lib/qt5/plugins/")))))
-             #t)))))
+                                         "/lib/qt5/plugins/"))))))))))
     (native-inputs
      (list python-cython))
     (inputs
@@ -159,10 +159,12 @@ GUI based workflow.  It is primarily used in the Orange framework.")
            python-orange-canvas-core
            python-orange-widget-base
            python-pandas
+           python-pygments
            python-pyqt
            python-pyqtgraph
            python-pyqtwebengine
            python-pyyaml
+           python-qtconsole
            python-requests
            python-scikit-learn
            python-scipy
-- 
2.30.2

Message #44 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH v2 01/11] gnu: python-anyqt: Update to 0.0.13.
Date: Fri, 14 Jan 2022 20:09:17 +0000

* gnu/packages/python-xyz.scm (python-anyqt): Update to 0.0.13.
[arguments]<#:phases>: Don't return #t.
---
 gnu/packages/python-xyz.scm | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index e53ba67cdc..4bdbedf7b7 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -14470,13 +14470,13 @@ ISO 8859, etc.).")
 (define-public python-anyqt
   (package
     (name "python-anyqt")
-    (version "0.0.11")
+    (version "0.0.13")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "AnyQt" version))
        (sha256
-        (base32 "0gl2czirzjvhbq963i2awxp8kwbc1grh67lpcwfipyn9w3kdwdj4"))))
+        (base32 "0z7myf0mp1qx4gza6ncqyq9whk67vblmh9n3klk19dv4aakjml2f"))))
     (build-system python-build-system)
     (arguments
      `(#:tests? #f ;there are no tests
@@ -14486,8 +14486,7 @@ ISO 8859, etc.).")
            ;; Delete files related to other operating systems.
            (lambda _
              (delete-file "AnyQt/QtMacExtras.py")
-             (delete-file "AnyQt/QtWinExtras.py")
-             #t)))))
+             (delete-file "AnyQt/QtWinExtras.py"))))))
     (home-page "https://github.com/ales-erjavec/anyqt")
     (synopsis "PyQt4/PyQt5 compatibility layer")
     (description "AnyQt is a PyQt4/PyQt5 compatibility layer.")

base-commit: 4d078ed7104b523a8861a73d48a60b126307b75e
-- 
2.30.2

Message #47 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH v2 02/11] gnu: python-qasync: Update to 0.22.0.
Date: Fri, 14 Jan 2022 20:09:18 +0000

* gnu/packages/python-xyz.scm (python-qasync): Update to 0.22.0.
[arguments]<#:phases>: Don't return #t.
---
 gnu/packages/python-xyz.scm | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 4bdbedf7b7..b627cca791 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -14547,7 +14547,7 @@ applications.")
 (define-public python-qasync
   (package
     (name "python-qasync")
-    (version "0.15.0")
+    (version "0.22.0")
     (source
      (origin
        ;; There are no tests in the PyPI tarball.
@@ -14557,7 +14557,7 @@ applications.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0va9h6v102d7mxz608banjc0l0v02dq3ywhr5i4nqaxx3qkazc2l"))))
+        (base32 "1q9cllrwf94whr0f6mipa0hdq1rcyqvklwx19g35g2dav8f3xkjl"))))
     (build-system python-build-system)
     (arguments
      `(#:test-target "pytest"
@@ -14565,8 +14565,7 @@ applications.")
        (modify-phases %standard-phases
          (add-before 'check 'set-qpa
            (lambda _
-             (setenv "QT_QPA_PLATFORM" "offscreen")
-             #t)))))
+             (setenv "QT_QPA_PLATFORM" "offscreen"))))))
     (native-inputs
      (list python-pytest python-pytest-runner))
     (propagated-inputs
-- 
2.30.2

Message #50 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH v2 03/11] gnu: Add python-pytest-pydocstyle.
Date: Fri, 14 Jan 2022 20:09:19 +0000

* gnu/packages/python-check.scm (python-pytest-pydocstyle): New variable.
---
 gnu/packages/python-check.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 6d8e3560d9..687750f423 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -686,6 +686,31 @@ framework and makes it easy to undo any monkey patching.  The fixtures are:
 in Pytest.")
     (license license:bsd-3)))
 
+(define-public python-pytest-pydocstyle
+  (package
+    (name "python-pytest-pydocstyle")
+    (version "2.2.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/henry0312/pytest-pydocstyle")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0w6fivz4nb4b70wzmi5sk17qs9pd05rnh03fmch6v00r3dmfpk39"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:tests? #f)) ; test requires the package itself
+    (propagated-inputs
+     `(("python-pydocstyle" ,python-pydocstyle)
+       ("python-pytest" ,python-pytest))) ; apparently required
+    (home-page "https://github.com/henry0312/pytest-pydocstyle")
+    (synopsis "Pytest plugin to run @command{pydocstyle}")
+    (description "This package provides a Pytest plugin to run
+@command{pydocstyle}.")
+    (license license:expat)))
+
 (define-public python-covdefaults
   (package
     (name "python-covdefaults")
-- 
2.30.2

Message #53 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH v2 04/11] gnu: python-pytest-pycodestyle: Update to 2.2.0.
Date: Fri, 14 Jan 2022 20:09:20 +0000

* gnu/packages/python-check.scm (python-pytest-pycodestyle): Update to 2.2.0.
---
 gnu/packages/python-check.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 687750f423..46a46197d7 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -1074,14 +1074,14 @@ framework.")
 (define-public python-pytest-pycodestyle
   (package
     (name "python-pytest-pycodestyle")
-    (version "2.0.0")               ;later versions require python-pytest~=5.4
+    (version "2.2.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "pytest-pycodestyle" version))
        (sha256
         (base32
-         "02i5gl7pm9cwxk15sn29inz3n8flpj1r3p1l110h43f2na5w8h7z"))))
+         "1clyjypn93hwvz17f4i6n2688835d4y8qsq2aw17d6fkbqiy8mg7"))))
     (build-system python-build-system)
     (propagated-inputs
      (list python-pycodestyle))
-- 
2.30.2

Message #56 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH v2 05/11] gnu: python-pynndescent: Update to 0.5.5.
Date: Fri, 14 Jan 2022 20:09:21 +0000

* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.5.
[arguments]<#:phases>: Override 'check phase.
[native-inputs]: Remove python-nose. Add python-pytest.
---
 gnu/packages/machine-learning.scm | 14 +++++++++++---
 1 file changed, 11 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 9de0d49e60..56dcc9baf2 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1210,16 +1210,24 @@ for scientific computing and data science (e.g. BLAS and OpenMP).")
 (define-public python-pynndescent
   (package
     (name "python-pynndescent")
-    (version "0.5.2")
+    (version "0.5.5")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "pynndescent" version))
        (sha256
-        (base32 "0w87c2v0li2rdbx6qfc2lb6y6bxpdy3jwfgzfs1kcr4d1chj5zfr"))))
+        (base32 "10pqqqc3jkpw03cyzy04slxmpgyhqnlgbyk0c1cv7kqr5d0zhzbs"))))
     (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (replace 'check
+           (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+             (when tests?
+               (add-installed-pythonpath inputs outputs)
+               (invoke "python" "-m" "pytest" "--pyargs" "pynndescent")))))))
     (native-inputs
-     (list python-nose))
+     (list python-pytest))
     (propagated-inputs
      (list python-joblib python-llvmlite python-numba python-scikit-learn
            python-scipy))
-- 
2.30.2

Message #59 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH v2 06/11] gnu: python-opentsne: Update to 0.6.1.
Date: Fri, 14 Jan 2022 20:09:22 +0000

* gnu/packages/machine-learning.scm (python-opentsne): Update to 0.6.1.
[source]<file-name>: Use git-file-name.
[arguments]<#:phases>: Don't return #t. Add 'skip-test phase after 'unpack to
skip a failing test.
---
 gnu/packages/machine-learning.scm | 19 ++++++++++---------
 1 file changed, 10 insertions(+), 9 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 56dcc9baf2..e5dbba21dd 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1241,17 +1241,16 @@ for k-neighbor-graph construction and approximate nearest neighbor search.")
 (define-public python-opentsne
   (package
     (name "python-opentsne")
-    (version "0.5.2")
+    (version "0.6.1")
     (source
      (origin
-       ;; No tests in the PyPI tarball.
-       (method git-fetch)
+       (method git-fetch) ; no tests in PyPI release
        (uri (git-reference
              (url "https://github.com/pavlin-policar/openTSNE")
              (commit (string-append "v" version))))
-       (file-name (string-append name "-" version "-checkout"))
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "1hl42wmafydk4fxdx05l180k3canmqw8h9r20fsqq2aq440b09gh"))))
+        (base32 "124nid27lfq1ipfjd2gkynqcmb4khisjb4r05jv42ckfkk4dbsxs"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
@@ -1259,13 +1258,15 @@ for k-neighbor-graph construction and approximate nearest neighbor search.")
          ;; Benchmarks require the 'macosko2015' data files.
          (add-after 'unpack 'delete-benchmark
            (lambda _
-             (delete-file-recursively "benchmarks")
-             #t))
+             (delete-file-recursively "benchmarks")))
+         (add-after 'unpack 'skip-test
+           (lambda _ ;; TODO: figure out why this test fails.
+             (substitute* "tests/test_correctness.py"
+               (("def test_iris\\(self\\)") "def _test_iris(self)"))))
          ;; Numba needs a writable dir to cache functions.
          (add-before 'check 'set-numba-cache-dir
            (lambda _
-             (setenv "NUMBA_CACHE_DIR" "/tmp")
-             #t)))))
+             (setenv "NUMBA_CACHE_DIR" "/tmp"))))))
     (native-inputs
      (list python-cython))
     (inputs
-- 
2.30.2

Message #62 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH v2 07/11] gnu: python-qtconsole: Update to 4.7.7.
Date: Fri, 14 Jan 2022 20:09:23 +0000

* gnu/packages/python-xyz.scm (python-qtconsole): Update to 4.7.7.
[source]: Make some cosmetic changes.
[arguments]<#:phases>: Don't return #t.
[propagated-inputs]: Remove python-ipython. Add python-ipython-genutils,
python-jupyter-client, python-jupyter-core, python-pygments, python-pyqt,
python-pyzmq, python-qtpy, python-traitlets.
---
 gnu/packages/python-xyz.scm | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index b627cca791..b1a251319c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -12588,14 +12588,13 @@ Jupyter kernels such as IJulia and IRKernel.")
 (define-public python-qtconsole
   (package
     (name "python-qtconsole")
-    (version "4.4.3")
+    (version "4.7.7")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "qtconsole" version))
        (sha256
-        (base32
-         "1b03n1ixzscm0jw97l4dq5iy4fslnqxq5bb8287xb7n2a1gs26xw"))))
+        (base32 "013qgpsm8jzcz3prhq7sxs36l8f7fgagmn3xa010gfhxf7cfldpj"))))
     (build-system python-build-system)
     (arguments
      ;; XXX: Tests are disabled, because this package needs python-ipython 7,
@@ -12608,10 +12607,11 @@ Jupyter kernels such as IJulia and IRKernel.")
        (modify-phases %standard-phases
          (add-before 'check 'pre-check
            (lambda _
-             (setenv "QT_QPA_PLATFORM" "offscreen")
-             #t)))))
+             (setenv "QT_QPA_PLATFORM" "offscreen"))))))
     (propagated-inputs
-     (list python-ipykernel python-ipython python-pyqt))
+     (list python-ipykernel python-ipython-genutils python-jupyter-client
+           python-jupyter-core python-pygments python-pyqt python-pyzmq
+           python-qtpy python-traitlets))
     (native-inputs
      (list python-pytest))
     (home-page "https://jupyter.org")
-- 
2.30.2

Message #65 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH v2 08/11] gnu: python-qtconsole: Enable tests.
Date: Fri, 14 Jan 2022 20:09:24 +0000

* gnu/packages/python-xyz.scm (python-qtconsole)[arguments]: Remove #:tests?.
<#:phases>: Set HOME and skip a failing test in the 'pre-check phase.
[native-inputs]: Add python-flaky.
---
 gnu/packages/python-xyz.scm | 16 +++++++---------
 1 file changed, 7 insertions(+), 9 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index b1a251319c..1337d4b637 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -12597,23 +12597,21 @@ Jupyter kernels such as IJulia and IRKernel.")
         (base32 "013qgpsm8jzcz3prhq7sxs36l8f7fgagmn3xa010gfhxf7cfldpj"))))
     (build-system python-build-system)
     (arguments
-     ;; XXX: Tests are disabled, because this package needs python-ipython 7,
-     ;; but we only have the LTS version 5.x.  This means that there might be
-     ;; runtime errors, but since this is a dependency of the Jupyter package,
-     ;; and Jupyter can be used without the qtconsole we can overlook this for
-     ;; now.
-     `(#:tests? #f
-       #:phases
+     `(#:phases
        (modify-phases %standard-phases
          (add-before 'check 'pre-check
            (lambda _
-             (setenv "QT_QPA_PLATFORM" "offscreen"))))))
+             (setenv "QT_QPA_PLATFORM" "offscreen")
+             (setenv "HOME" "/tmp")
+             ;; FIXME: skip a failing test.
+             (substitute* "qtconsole/tests/test_jupyter_widget.py"
+               (("def test_other_output") "def _test_other_output")))))))
     (propagated-inputs
      (list python-ipykernel python-ipython-genutils python-jupyter-client
            python-jupyter-core python-pygments python-pyqt python-pyzmq
            python-qtpy python-traitlets))
     (native-inputs
-     (list python-pytest))
+     (list python-flaky python-pytest))
     (home-page "https://jupyter.org")
     (synopsis "Jupyter Qt console")
     (description "This package provides a Qt-based console for Jupyter with
-- 
2.30.2

Message #68 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH v2 09/11] gnu: python-orange-canvas-core: Update to 0.1.24.
Date: Fri, 14 Jan 2022 20:09:25 +0000

* gnu/packages/orange.scm (python-orange-canvas-core): Update to 0.1.24.
[arguments]<#:phases>: Don't return #t.
[propagated-inputs]: Remove python-pyqt.
---
 gnu/packages/orange.scm | 8 +++-----
 1 file changed, 3 insertions(+), 5 deletions(-)

diff --git a/gnu/packages/orange.scm b/gnu/packages/orange.scm
index efdafe3d45..615e7cec68 100644
--- a/gnu/packages/orange.scm
+++ b/gnu/packages/orange.scm
@@ -34,13 +34,13 @@
 (define-public python-orange-canvas-core
   (package
     (name "python-orange-canvas-core")
-    (version "0.1.19")
+    (version "0.1.24")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "orange-canvas-core" version))
        (sha256
-        (base32 "03wav2msfm32y8zwq69v1v6qyh1ld76xla2z60avf49yhbwjgwal"))))
+        (base32 "0m3dszdkc5bc80ahcvrqxz8jahs33js9cx1mc6rc9ihysq2ddnfz"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
@@ -51,15 +51,13 @@
              (substitute* "orangecanvas/application/tests/test_mainwindow.py"
                (("test_help_requests") "_test_help_requests"))
              (setenv "HOME" "/tmp")
-             (setenv "QT_QPA_PLATFORM" "offscreen")
-             #t)))))
+             (setenv "QT_QPA_PLATFORM" "offscreen"))))))
     (propagated-inputs
      (list python-anyqt
            python-cachecontrol
            python-commonmark
            python-dictdiffer
            python-docutils
-           python-pyqt
            python-qasync
            python-requests))
     (home-page "https://github.com/biolab/orange-canvas-core")
-- 
2.30.2

Message #71 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH v2 10/11] gnu: python-orange-widget-base: Update to 4.16.1.
Date: Fri, 14 Jan 2022 20:09:26 +0000

* gnu/packages/orange.scm (python-orange-widget-base): Update to 4.16.1.
[arguments]<#:phases>: Don't return #t.
[propagated-inputs]: Add python-typing-extensions.
---
 gnu/packages/orange.scm | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

diff --git a/gnu/packages/orange.scm b/gnu/packages/orange.scm
index 615e7cec68..710be87cb0 100644
--- a/gnu/packages/orange.scm
+++ b/gnu/packages/orange.scm
@@ -71,13 +71,13 @@ data-mining application.")
 (define-public python-orange-widget-base
   (package
     (name "python-orange-widget-base")
-    (version "4.12.0")
+    (version "4.16.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "orange-widget-base" version))
        (sha256
-        (base32 "13sy3s8rdqs3i3ghixljpqvnfz81qmbb0kqlasw39zvf39qc22kz"))))
+        (base32 "0a0sijsvzijj71sxq8ckpgz59z1cq9sxn4fya3z23ibdzjzwrsi7"))))
     (build-system python-build-system)
     (arguments
      `(;; unittest fails to load one test, all other tests are passing:
@@ -88,11 +88,10 @@ data-mining application.")
          (add-before 'check 'check-setup
            (lambda _
              (setenv "HOME" "/tmp")
-             (setenv "QT_QPA_PLATFORM" "offscreen")
-             #t)))))
+             (setenv "QT_QPA_PLATFORM" "offscreen"))))))
     (propagated-inputs
      (list python-anyqt python-matplotlib python-orange-canvas-core
-           python-pyqtgraph))
+           python-pyqtgraph python-typing-extensions))
     (home-page "https://github.com/biolab/orange-widget-base")
     (synopsis "Base Widget for Orange Canvas")
     (description
-- 
2.30.2

Message #74 received at 52696 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 52696 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH v2 11/11] gnu: orange: Update to 3.31.1.
Date: Fri, 14 Jan 2022 20:09:27 +0000

* gnu/packages/orange.scm (orange): Update to 3.31.1.
[arguments]<#:phases>: Don't return #t. Adjust file name for substitution in
'preparations. Rename 'set-HOME to 'pre-check. Set QT_QPA_PLATFORM in
'pre-check.
[inputs]: Add python-pygments, python-qtconsole.
---
 gnu/packages/orange.scm | 18 ++++++++++--------
 1 file changed, 10 insertions(+), 8 deletions(-)

diff --git a/gnu/packages/orange.scm b/gnu/packages/orange.scm
index 710be87cb0..2b6fc00abc 100644
--- a/gnu/packages/orange.scm
+++ b/gnu/packages/orange.scm
@@ -102,13 +102,13 @@ GUI based workflow.  It is primarily used in the Orange framework.")
 (define-public orange
   (package
     (name "orange")
-    (version "3.28.0")
+    (version "3.31.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "Orange3" version))
        (sha256
-        (base32 "1ac4xjjkx06z10hl7k0zh1z3qhkl5vng15l9jkpkmck9spinbzil"))))
+        (base32 "0jqay46nysgfxldik7f6mfi8iylai2gwfpq60vklrfi1rhqf3pn6"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
@@ -125,11 +125,12 @@ GUI based workflow.  It is primarily used in the Orange framework.")
              ;; We use a correct version of PyQtWebEngine, but the build scripts
              ;; consider it incorrect anyways. Remove the constraint entirely to
              ;; work around this bug.
-             (substitute* "requirements-gui.txt" (("PyQtWebEngine>=5.12") ""))
-             #t))
-         (add-before 'check 'set-HOME
+             (substitute* "requirements-pyqt.txt" (("PyQtWebEngine>=5.12") ""))))
+         (add-before 'check 'pre-check
            ;; Tests need a writable home.
-           (lambda _ (setenv "HOME" "/tmp") #t))
+           (lambda _
+             (setenv "HOME" "/tmp")
+             (setenv "QT_QPA_PLATFORM" "offscreen")))
          (add-after 'install 'wrap-executable
            ;; Ensure that icons are found at runtime.
            (lambda* (#:key inputs outputs #:allow-other-keys)
@@ -137,8 +138,7 @@ GUI based workflow.  It is primarily used in the Orange framework.")
                (wrap-program (string-append out "/bin/orange-canvas")
                  `("QT_PLUGIN_PATH" prefix
                    ,(list (string-append (assoc-ref inputs "qtsvg")
-                                         "/lib/qt5/plugins/")))))
-             #t)))))
+                                         "/lib/qt5/plugins/"))))))))))
     (native-inputs
      (list python-cython))
     (inputs
@@ -159,10 +159,12 @@ GUI based workflow.  It is primarily used in the Orange framework.")
            python-orange-canvas-core
            python-orange-widget-base
            python-pandas
+           python-pygments
            python-pyqt
            python-pyqtgraph
            python-pyqtwebengine
            python-pyyaml
+           python-qtconsole
            python-requests
            python-scikit-learn
            python-scipy
-- 
2.30.2

Message #79 received at 52696-done <at> debbugs.gnu.org (full text, mbox):

From: Nicolas Goaziou <mail <at> nicolasgoaziou.fr>
To: Vinicius Monego <monego <at> posteo.net>
Cc: 52696-done <at> debbugs.gnu.org
Subject: Re: [bug#52696] [PATCH 00/12] Update Orange.
Date: Fri, 14 Jan 2022 21:33:40 +0100

Hello,

Vinicius Monego <monego <at> posteo.net> writes:

>   gnu: python-anyqt: Update to 0.0.13.
>   gnu: python-qasync: Update to 0.22.0.
>   gnu: Add python-pytest-pydocstyle.
>   gnu: python-pytest-pycodestyle: Update to 2.2.0.
>   gnu: python-dictdiffer: Update to 0.9.0.
>   gnu: python-pynndescent: Update to 0.5.5.
>   gnu: python-opentsne: Update to 0.6.1.
>   gnu: python-qtconsole: Update to 4.7.7.
>   gnu: python-qtconsole: Enable tests.
>   gnu: python-orange-canvas-core: Update to 0.1.24.
>   gnu: python-orange-widget-base: Update to 4.16.1.
>   gnu: orange: Update to 3.31.0.

I removed input labels from python-pytest-pydocstyle and applied v2 of
this patch set. Thank you!

Regards,
-- 
Nicolas Goaziou

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.