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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v4 8/8] gnu: Add python-pyvista.
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* gnu/packages/python-science.scm (python-pyvista): New variable.
---
gnu/packages/python-science.scm | 53 +++++++++++++++++++++++++++++++++
1 file changed, 53 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.=
scm
index 07d713e013..a62de1e5a0 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -17,6 +17,7 @@
;;; Copyright =C2=A9 2021 Felix Gruber <felgru@HIDDEN>
;;; Copyright =C2=A9 2022 Malte Frank Gerdes <malte.f.gerdes@HIDDEN>
;;; Copyright =C2=A9 2022 Guillaume Le Vaillant <glv@HIDDEN>
+;;; Copyright =C2=A9 2022 Paul A. Patience <paul@HIDDEN>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -1183,3 +1184,55 @@ (define-public python-numpy-groupies
"This package provides optimized tools for group-indexing operations:
aggregated sum and more.")
(license license:bsd-3)))
+
+(define-public python-pyvista
+ (package
+ (name "python-pyvista")
+ (version "0.34.0")
+ (source
+ ;; The PyPI tarball does not contain the tests.
+ ;; (However, we don't yet actually run the tests.)
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/pyvista/pyvista")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0f2x2wvi5pkpv5h3jrnx8zxnaj51navfqp2fdna1l9rpjgjjf94g"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ (list python-appdirs
+ python-imageio
+ python-matplotlib
+ python-meshio
+ python-numpy
+ python-pillow
+ python-scooby
+ vtk))
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ ;; Disable tests for now because they require several modules
+ ;; currently unpackaged in Guix.
+ (delete 'check)
+ ;; Disable the sanity check, which fails with the following error=
:
+ ;;
+ ;; ...checking requirements: ERROR: pyvista=3D=3D0.34.0 Distrib=
utionNotFound(Requirement.parse('vtk'), {'pyvista'})
+ (delete 'sanity-check))))
+ (home-page "https://docs.pyvista.org/")
+ (synopsis "3D plotting and mesh analysis through VTK")
+ (description
+ "PyVista is...
+
+@itemize
+@item @emph{Pythonic VTK}: a high-level API to the Visualization
+Toolkit (VTK);
+@item mesh data structures and filtering methods for spatial datasets;
+@item 3D plotting made simple and built for large/complex data geometries.
+@end itemize
+
+This package provides a Pythonic, well-documented interface exposing VTK's
+powerful visualization backend to facilitate rapid prototyping, analysis, =
and
+visual integration of spatially referenced datasets.")
+ (license license:expat)))
--
2.36.0
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v4 7/8] gnu: Add python-scooby.
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* gnu/packages/python-xyz.scm (python-pyvips-for-python-scooby,
python-scooby): New variables.
---
gnu/packages/python-xyz.scm | 81 +++++++++++++++++++++++++++++++++++++
1 file changed, 81 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index c70379a056..20dbcefde0 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -119,6 +119,7 @@
;;; Copyright =C2=A9 2022 Evgeny Pisemsky <evgeny@HIDDEN>
;;; Copyright =C2=A9 2022 drozdov <drozdov@HIDDEN>
;;; Copyright =C2=A9 2022 Peter Polidoro <peter@HIDDEN>
+;;; Copyright =C2=A9 2022 Paul A. Patience <paul@HIDDEN>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -29641,3 +29642,83 @@ (define-public python-pyperf
@item support multiple units: seconds, bytes and integer.
@end itemize")
(license license:expat)))
+
+;; Scooby requires for its test suite a =E2=80=98pyvips=E2=80=99 package t=
hat is missing its
+;; VIPS dependency.
+(define python-pyvips-for-python-scooby
+ (package
+ (inherit python-pyvips)
+ (name "python-pyvips-for-python-scooby")
+ (arguments
+ (substitute-keyword-arguments (package-arguments python-pyvips)
+ ((#:phases phases)
+ #~(modify-phases #$phases
+ (delete 'fix-paths)
+ ;; The checks won't succeed without VIPS.
+ (delete 'check)
+ (delete 'sanity-check)))))
+ (inputs
+ (modify-inputs (package-inputs python-pyvips)
+ (delete "vips")))
+ (synopsis "pyvips for Scooby's test suite")))
+
+(define-public python-scooby
+ (package
+ (name "python-scooby")
+ (version "0.5.12")
+ (source
+ ;; The PyPI tarball does not contain the tests.
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/banesullivan/scooby")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1gkpmz8wl3jg8ylf1na35308sznw2g9wx33zqlyq5i2gpy2ml9mw"))))
+ (build-system python-build-system)
+ (native-inputs
+ (list python-beautifulsoup4
+ python-numpy
+ python-pytest
+ python-pytest-cov
+ python-pyvips-for-python-scooby
+ python-scipy))
+ (propagated-inputs
+ (list python-psutil))
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-tests
+ (lambda _
+ (substitute* "tests/test_scooby.py"
+ ;; The test suite uses the no-version PyPI package
+ ;; (https://pypi.org/project/no-version/),
+ ;; but it doesn't seem worth packaging in Guix just for thi=
s.
+ (("scooby\\.report\\.VERSION_NOT_FOUND")
+ "scooby.report.MODULE_NOT_FOUND")
+ (("^ +import no_version # noqa.*") ""))))
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "pytest")))))))
+ (home-page "https://github.com/banesullivan/scooby")
+ (synopsis "Report hardware information and Python package versions")
+ (description
+ "The Scooby package reports the following information about the curre=
ntly
+running system:
+
+@itemize
+@item operating system name;
+@item hardware information including machine type (e.g., @samp{i386},
+@samp{x86_64}, etc.), CPU count and total RAM;
+@item Python environment (e.g., Python, IPython, etc.);
+@item file system name;
+@item Python version;
+@item versions of specified Python packages.
+@end itemize
+
+It can generate reports as HTML tables or plain text lists.
+
+Scooby has no required dependencies, and only few optional dependencies.")
+ (license license:expat)))
--
2.36.0
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v4 6/8] gnu: Add python-pyvips.
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* gnu/packages/python-xyz.scm (python-pyvips): New variable.
---
gnu/packages/python-xyz.scm | 60 +++++++++++++++++++++++++++++++++++++
1 file changed, 60 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 84f8b991e5..c70379a056 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -172,6 +172,7 @@ (define-module (gnu packages python-xyz)
#:use-module (gnu packages haskell-xyz)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages image)
+ #:use-module (gnu packages image-processing)
#:use-module (gnu packages imagemagick)
#:use-module (gnu packages jupyter)
#:use-module (gnu packages kerberos)
@@ -7582,6 +7583,65 @@ (define-public python-imageio
data, and scientific formats.")
(license license:bsd-2)))
+(define-public python-pyvips
+ (package
+ (name "python-pyvips")
+ (version "2.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pyvips" version))
+ (sha256
+ (base32 "0lq71iiic4pc8qhxr60gi141w25pjnn4vsh05d5l0fjkgjsv137b"))))
+ (build-system python-build-system)
+ (arguments
+ (list #:phases
+ #~(modify-phases %standard-phases
+ ;; Maybe switch to API mode (i.e., build the C extension)?
+ ;; It is advertised as faster to start up and run.
+ ;; However, even with =E2=80=98pkg-config=E2=80=99 and =
=E2=80=98python-pkgconfig=E2=80=99 in
+ ;; =E2=80=98native-inputs=E2=80=99, the API mode build fail=
s with:
+ ;;
+ ;; Falling back to ABI mode. Details: unable to find pkg-=
config package "vips"
+ ;;
+ ;; The build doesn't actually fail without the below
+ ;; substitution, it's just slower because =E2=80=98setup.py=
=E2=80=99 tries
+ ;; (unsuccessfully) to download the Python =E2=80=98pkgconf=
ig=E2=80=99 module.
+ (add-after 'unpack 'fix-build
+ (lambda _
+ (substitute* "setup.py"
+ (("^( +setup_)API\\(\\)\n" _ prefix)
+ (string-append prefix "ABI()\n")))))
+ (add-after 'unpack 'fix-paths
+ (lambda _
+ (substitute* "pyvips/__init__.py"
+ (("^( +_vips_libname) =3D '(libvips.so.42)'"
+ _ var libname)
+ (format #f "~a =3D '~a/lib/~a'"
+ var #$(this-package-input "vips") libname))
+ (("^( +_gobject_libname) =3D '(libgobject-2.0.so.0)'"
+ _ var libname)
+ (format #f "~a =3D '~a/lib/~a'"
+ var #$(this-package-input "glib") libname)))=
))
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "python" "setup.py" "test")))))))
+ (native-inputs
+ (list python-pyperf
+ python-pytest
+ python-pytest-flake8
+ python-pytest-runner))
+ (inputs
+ (list glib vips))
+ (propagated-inputs
+ (list python-cffi))
+ (home-page "https://github.com/libvips/pyvips")
+ (synopsis "Python bindings for VIPS")
+ (description "The @code{pyvips} package provides Python bindings for V=
IPS,
+a multithreaded image-processing system with low memory needs.")
+ (license license:expat)))
+
(define-public python-pycparser
(package
(name "python-pycparser")
--
2.36.0
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v4 5/8] gnu: Add python-pyperf.
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* gnu/packages/python-xyz.scm (python-pyperf): New variable.
---
gnu/packages/python-xyz.scm | 47 +++++++++++++++++++++++++++++++++++++
1 file changed, 47 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 9a5d311680..84f8b991e5 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -29534,3 +29534,50 @@ (define-public python-sre-yield
uses the parsed regular expression, so you get a much more accurate result
than trying to just split strings.")
(license license:asl2.0)))
+
+(define-public python-pyperf
+ (package
+ (name "python-pyperf")
+ (version "2.3.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pyperf" version))
+ (sha256
+ (base32 "189qf9wdbig0fk4n3bavx8acgdbay5lllfvw48jvbfaafb7y5hja"))))
+ (build-system python-build-system)
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-tests
+ (lambda _
+ ;; Some of these tests fail with:
+ ;;
+ ;; ModuleNotFoundError: No module named 'pyperf'
+ ;;
+ ;; even when calling =E2=80=98add-installed-pythonpath=
=E2=80=99 in the =E2=80=98check=E2=80=99
+ ;; phase.
+ (delete-file "pyperf/tests/test_examples.py")))
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ ;; From tox.ini's =E2=80=98testenv.commands=E2=80=99.
+ (invoke "python" "-bb" "-Wd"
+ "-m" "unittest" "discover"
+ "-s" "pyperf/tests/" "-v")))))))
+ (native-inputs
+ (list python-psutil))
+ (home-page "https://github.com/psf/pyperf")
+ (synopsis "Toolkit for running Python benchmarks")
+ (description "The Python @code{pyperf} module is a toolkit for writing=
,
+running and analyzing benchmarks. It features a simple API that can:
+
+@itemize
+@item automatically calibrate a benchmark for a time budget;
+@item spawn multiple worker processes;
+@item compute the mean and standard deviation;
+@item detect if a benchmark result seems unstable;
+@item store benchmark results in JSON format;
+@item support multiple units: seconds, bytes and integer.
+@end itemize")
+ (license license:expat)))
--
2.36.0
guix-patches@HIDDEN:bug#55060; Package guix-patches.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v4 4/8] gnu: python-meshio: Update to 5.3.4.
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* gnu/packages/simulation.scm (python-meshio): Update to 5.3.4.
[source]: Reindent.
[propagated-inputs]: Add python-rich.
---
gnu/packages/simulation.scm | 25 +++++++++++++------------
1 file changed, 13 insertions(+), 12 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index b927392263..19e41b0591 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -773,18 +773,18 @@ (define-public fullswof-2d
(define-public python-meshio
(package
(name "python-meshio")
- (version "4.4.6")
+ (version "5.3.4")
(source
- (origin
- (method url-fetch)
- (uri (pypi-uri "meshio" version))
- (sha256
- (base32
- "0kv832s2vyff30zz8yqypw5jifwdanvh5x56d2bzkvy94h4jlddy"))
- (snippet
- '(let ((file (open-file "setup.py" "a")))
- (display "from setuptools import setup\nsetup()" file)
- (close-port file)))))
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "meshio" version))
+ (sha256
+ (base32
+ "1w39qcg0rw5kb04j7sa45fnqd6k20fsdgrf62cmw2ygjgwnnjh72"))
+ (snippet
+ '(let ((file (open-file "setup.py" "a")))
+ (display "from setuptools import setup\nsetup()" file)
+ (close-port file)))))
(build-system python-build-system)
(inputs
(list python-h5py
@@ -793,7 +793,8 @@ (define-public python-meshio
(list python-pytest))
(propagated-inputs
(list python-importlib-metadata
- python-numpy))
+ python-numpy
+ python-rich))
(arguments
'(#:phases
(modify-phases %standard-phases
--
2.36.0
guix-patches@HIDDEN:bug#55060; Package guix-patches.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v4 3/8] gnu: python-meshio: Honor #:tests? flag.
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* gnu/packages/simulation.scm (python-meshio)[arguments]: Adjust custom
'check' phase to honor the #:tests? flag. Remove unnecessary
'add-installed-pythonpath' call.
---
gnu/packages/simulation.scm | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 42383bf486..b927392263 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -795,12 +795,12 @@ (define-public python-meshio
(list python-importlib-metadata
python-numpy))
(arguments
- `(#:phases
+ '(#:phases
(modify-phases %standard-phases
(replace 'check
- (lambda* (#:key outputs inputs #:allow-other-keys)
- (add-installed-pythonpath inputs outputs)
- (invoke "python" "-m" "pytest" "-v" "tests"))))))
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "python" "-m" "pytest" "-v" "tests")))))))
(home-page "https://github.com/nschloe/meshio")
(synopsis "I/O for mesh files")
(description "There are various file formats available for
--
2.36.0
guix-patches@HIDDEN:bug#55060; Package guix-patches.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v4 2/8] gnu: python-meshio: Remove trailing booleans.
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* gnu/packages/simulation.scm (python-meshio)[snippet]: Remove trailing
boolean (and therefore the 'begin').
[arguments]: Remove trailing boolean.
---
gnu/packages/simulation.scm | 11 ++++-------
1 file changed, 4 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index c8309761d2..42383bf486 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -782,11 +782,9 @@ (define-public python-meshio
(base32
"0kv832s2vyff30zz8yqypw5jifwdanvh5x56d2bzkvy94h4jlddy"))
(snippet
- '(begin
- (let ((file (open-file "setup.py" "a")))
- (display "from setuptools import setup\nsetup()" file)
- (close-port file))
- #t))))
+ '(let ((file (open-file "setup.py" "a")))
+ (display "from setuptools import setup\nsetup()" file)
+ (close-port file)))))
(build-system python-build-system)
(inputs
(list python-h5py
@@ -802,8 +800,7 @@ (define-public python-meshio
(replace 'check
(lambda* (#:key outputs inputs #:allow-other-keys)
(add-installed-pythonpath inputs outputs)
- (invoke "python" "-m" "pytest" "-v" "tests")
- #t)))))
+ (invoke "python" "-m" "pytest" "-v" "tests"))))))
(home-page "https://github.com/nschloe/meshio")
(synopsis "I/O for mesh files")
(description "There are various file formats available for
--
2.36.0
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v4 1/8] gnu: python-meshio: Remove input labels.
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* gnu/packages/simulation.scm (python-meshio)[inputs, native-inputs,
propagated-inputs]: Remove labels.
---
gnu/packages/simulation.scm | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 3f2d8e136d..c8309761d2 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -789,13 +789,13 @@ (define-public python-meshio
#t))))
(build-system python-build-system)
(inputs
- `(("h5py" ,python-h5py)
- ("netcdf4" ,python-netcdf4)))
+ (list python-h5py
+ python-netcdf4))
(native-inputs
- `(("pytest" ,python-pytest)))
+ (list python-pytest))
(propagated-inputs
- `(("importlib-metadata" ,python-importlib-metadata)
- ("numpy" ,python-numpy)))
+ (list python-importlib-metadata
+ python-numpy))
(arguments
`(#:phases
(modify-phases %standard-phases
--
2.36.0
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.Received: (at 55060) by debbugs.gnu.org; 2 May 2022 21:16:51 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Mon May 02 17:16:51 2022 Received: from localhost ([127.0.0.1]:38147 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nldPX-0006NB-8T for submit <at> debbugs.gnu.org; Mon, 02 May 2022 17:16:51 -0400 Received: from mail-4317.proton.ch ([185.70.43.17]:16509) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <paul@HIDDEN>) id 1nldPT-0006Mw-Sb for 55060 <at> debbugs.gnu.org; Mon, 02 May 2022 17:16:50 -0400 Date: Mon, 02 May 2022 21:16:33 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1651526200; bh=DjPsiRgZzB6TYKdhe6JO/v7+5Mw6HnmpjmaUa1M9k8I=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:Feedback-ID:From:To: Cc:Date:Subject:Reply-To:Feedback-ID:Message-ID; b=QBNCqlfwvmTeZ/VbqTqtCuBZ3LTDeY35HvAhPLAFMJUVuzJrqb07yD63LRFYJufu9 qOKmLBwWkohne7jIqNdv+PQWtMz9ucyo8DDviJLkU9i1WX4gCgXNUsHd3S8JuLoB8q QSCn5JUSCd29u3lU9Z8tDhlWNCAtaXtz1clvClJ379RlCnw1it+vkID/nnTt4G191V HaqNyxQwDNC2SZj3oyhRUCcLa8QPmExmQKM7cSY9nLSjZ5cCqyp6IcpxxQua4tk98u lpxcsmSKRVvjdobiMPnOokRfCYnWOwK5BwbGgMtKHcFE0wXIPUdgA64F6PUR3FYLr9 nbbRF4SVkYjnA== To: 55060 <at> debbugs.gnu.org From: "Paul A. Patience" <paul@HIDDEN> Subject: [PATCH v4 0/8] gnu: Add python-pyvista. Message-ID: <20220502211624.689372-1-paul@HIDDEN> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55060 Cc: "Paul A. Patience" <paul@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Reply-To: "Paul A. Patience" <paul@HIDDEN> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) Fixed Scooby's pyvips test. Scooby actually requires a pyvips package that is completely missing its VI= PS dependency, so I don't think there is a way around having a pyvips variant just for Scooby. I couldn't figure out how to build the C extension for pyvips, but that's n= ot relevant for Scooby; I added the package just to inherit from it in Scooby'= s pyvips variant. It could be changed in the future. For now what's installed is the CFFI version. I also couldn't figure out how to get some tests to pass with pyperf. It seems like it should be easy to fix, though. Paul A. Patience (8): gnu: python-meshio: Remove input labels. gnu: python-meshio: Remove trailing booleans. gnu: python-meshio: Honor #:tests? flag. gnu: python-meshio: Update to 5.3.4. gnu: Add python-pyperf. gnu: Add python-pyvips. gnu: Add python-scooby. gnu: Add python-pyvista. gnu/packages/python-science.scm | 53 +++++++++ gnu/packages/python-xyz.scm | 188 ++++++++++++++++++++++++++++++++ gnu/packages/simulation.scm | 44 ++++---- 3 files changed, 262 insertions(+), 23 deletions(-) -- 2.36.0
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.Received: (at 55060) by debbugs.gnu.org; 2 May 2022 16:18:45 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Mon May 02 12:18:45 2022 Received: from localhost ([127.0.0.1]:37742 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nlYl2-0007mB-RF for submit <at> debbugs.gnu.org; Mon, 02 May 2022 12:18:44 -0400 Received: from baptiste.telenet-ops.be ([195.130.132.51]:33910) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <maximedevos@HIDDEN>) id 1nlYl1-0007lu-44 for 55060 <at> debbugs.gnu.org; Mon, 02 May 2022 12:18:43 -0400 Received: from ptr-bvsjgyhxw7psv60dyze.18120a2.ip6.access.telenet.be ([IPv6:2a02:1811:8c09:9d00:3c5f:2eff:feb0:ba5a]) by baptiste.telenet-ops.be with bizsmtp id RsJc270064UW6Th01sJhnE; Mon, 02 May 2022 18:18:41 +0200 Message-ID: <1d47ff656220d4a2a56988dc7cef88532f5e8a07.camel@HIDDEN> Subject: Re: [bug#55060] [PATCH 5/6] gnu: Add python-scooby. From: Maxime Devos <maximedevos@HIDDEN> To: "Paul A. Patience" <paul@HIDDEN> Date: Mon, 02 May 2022 18:18:31 +0200 In-Reply-To: <87v8uorltd.fsf@HIDDEN> References: <20220422010244.23280-1-paul@HIDDEN> <20220422010244.23280-5-paul@HIDDEN> <0cbdfb3ef04e504737782aa368021cdad9fe9404.camel@HIDDEN> <87a6cd6ik4.fsf@HIDDEN> <7e7b69f23148674b8fd003e5868c4a05e5acd364.camel@HIDDEN> <877d74t20s.fsf@HIDDEN> <e0a3e833e1a6e310b3bb3aa2f94d36920208cb88.camel@HIDDEN> <87v8uorltd.fsf@HIDDEN> Content-Type: multipart/signed; micalg="pgp-sha512"; protocol="application/pgp-signature"; boundary="=-bM61M9UcL3j8gI2IgoQh" User-Agent: Evolution 3.38.3-1 MIME-Version: 1.0 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=telenet.be; s=r22; t=1651508321; bh=sFNlFkWzQAXJiUmE1YYRWO/MQ+SFP8pm7TQrl5Rqvw4=; h=Subject:From:To:Cc:Date:In-Reply-To:References; b=d/eLd+ueCQmkuiccEtpV/mA8xR0tCH+wqoUL59QIEeSZ7DQEd8qe2hupha4DOHkS/ gCMVk/fIrA7q1I3WWf4l/R0SpDopeEJRE3Ab/OPT6d34qByStP7obCVCZPUGwuufhW qD6ze4JAbL+CWWcMUxFDMAYWKnTWcTOAe6Ws+SpyytDM4PiY/MJRtlYksam50CWb10 sV6qOskYf4aBk+2n+EZ2k/6CwzjBBfCq1vrPOgA0xfc4kRhgJYthamsBPRL810GMP6 k5veXUiSJwLBCcsrZnMGjjjcuUU0Dz0cEBB+ornPToduhadPiFUwO82APRN2YpSC3f RXBbWcVcI7VCQ== X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55060 Cc: 55060 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) --=-bM61M9UcL3j8gI2IgoQh Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Paul A. Patience schreef op ma 02-05-2022 om 15:33 [+0000]: > > That said, maybe it could be depropagated > > (maybe there's no need for a package variant)? >=20 > Do you mean with a package transformation directly in python-scooby's > native inputs? No, I mean modifying the python-pyvips package definition to move 'vips' from 'propagated-inputs' to 'inputs' (as-is, this might cause problems as 'python-pyvips' might then not find 'vips', but such things can often be resolved by sufficient application of 'substitute*'). Greetings, Maxime. --=-bM61M9UcL3j8gI2IgoQh Content-Type: application/pgp-signature; name="signature.asc" Content-Description: This is a digitally signed message part Content-Transfer-Encoding: 7bit -----BEGIN PGP SIGNATURE----- iI0EABYKADUWIQTB8z7iDFKP233XAR9J4+4iGRcl7gUCYnAEVxccbWF4aW1lZGV2 b3NAdGVsZW5ldC5iZQAKCRBJ4+4iGRcl7nQDAP91hC1X4bDgHf8nmgUo6xUrf1MU L8Blr73A4I8Mw7ZrZQEAwcJcxF548eXdENtm87wp87IRGrJUrJaDFt1QIg4m1As= =E9hJ -----END PGP SIGNATURE----- --=-bM61M9UcL3j8gI2IgoQh--
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.Received: (at 55060) by debbugs.gnu.org; 2 May 2022 15:34:00 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Mon May 02 11:34:00 2022 Received: from localhost ([127.0.0.1]:37699 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nlY3k-0006am-CU for submit <at> debbugs.gnu.org; Mon, 02 May 2022 11:34:00 -0400 Received: from mail-4317.proton.ch ([185.70.43.17]:49977) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <paul@HIDDEN>) id 1nlY3i-0006aY-1h for 55060 <at> debbugs.gnu.org; Mon, 02 May 2022 11:33:59 -0400 Date: Mon, 02 May 2022 15:33:40 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1651505630; bh=RzEdnWs9I72UxAttyl0WLEcAfwpcV3kxUETt4fqGH1Q=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=bIBh1IKgpeu5DUsM9bc+u33gCN0xMCyGdnbZgUNnhLWnPPLRo/coRXpRwJiWYio7t i7Yb2+evY2wfSWAj2Usm+IG/VOi8r2TbEuiK4vM7eju4zwLBZwe1AXaV93BzzsokPF nXNPzh2mcnsOMuWc1b6fac4pgwKGV8aep3CVhNI55Kr2NjV4Xdi8OQSwzPKOd1NJ1g tknfHViZcj3xOvnntmBOUsib6l3vCW8s2IihM5t74pISo2SFm+YB/qTh50pu97ItrW GGB43jJAR5IaX7Ess8wnnPmBCIBRJEmhM0dODxslcYf0lBe5LZhmshu+JesvIJkfA5 0Xf5s87h99fHA== To: Maxime Devos <maximedevos@HIDDEN> From: "Paul A. Patience" <paul@HIDDEN> Subject: Re: [bug#55060] [PATCH 5/6] gnu: Add python-scooby. Message-ID: <87v8uorltd.fsf@HIDDEN> In-Reply-To: <e0a3e833e1a6e310b3bb3aa2f94d36920208cb88.camel@HIDDEN> References: <20220422010244.23280-1-paul@HIDDEN> <20220422010244.23280-5-paul@HIDDEN> <0cbdfb3ef04e504737782aa368021cdad9fe9404.camel@HIDDEN> <87a6cd6ik4.fsf@HIDDEN> <7e7b69f23148674b8fd003e5868c4a05e5acd364.camel@HIDDEN> <877d74t20s.fsf@HIDDEN> <e0a3e833e1a6e310b3bb3aa2f94d36920208cb88.camel@HIDDEN> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55060 Cc: 55060 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Reply-To: "Paul A. Patience" <paul@HIDDEN> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) On 2022-05-02 11:06:52-04:00, Maxime Devos wrote: > Paul A. Patience schreef op ma 02-05-2022 om 15:00 [+0000]: >> I suppose a python-pyvips-for-python-scooby that inherits from >> python-pyvips while removing its propagated inputs would do. > > AFAICT, python-pyvips does not currently exist, at least according to > "guix show python-pyvips". I would have to package it (I'm currently doing so). > That said, maybe it could be depropagated > (maybe there's no need for a package variant)? Do you mean with a package transformation directly in python-scooby's native inputs? Best regards, Paul
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.Received: (at 55060) by debbugs.gnu.org; 2 May 2022 15:07:00 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Mon May 02 11:07:00 2022 Received: from localhost ([127.0.0.1]:37686 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nlXdb-0005xQ-W1 for submit <at> debbugs.gnu.org; Mon, 02 May 2022 11:07:00 -0400 Received: from michel.telenet-ops.be ([195.130.137.88]:35018) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <maximedevos@HIDDEN>) id 1nlXda-0005xI-Fo for 55060 <at> debbugs.gnu.org; Mon, 02 May 2022 11:06:59 -0400 Received: from ptr-bvsjgyhxw7psv60dyze.18120a2.ip6.access.telenet.be ([IPv6:2a02:1811:8c09:9d00:3c5f:2eff:feb0:ba5a]) by michel.telenet-ops.be with bizsmtp id Rr6w2700Q4UW6Th06r6wBX; Mon, 02 May 2022 17:06:57 +0200 Message-ID: <e0a3e833e1a6e310b3bb3aa2f94d36920208cb88.camel@HIDDEN> Subject: Re: [bug#55060] [PATCH 5/6] gnu: Add python-scooby. From: Maxime Devos <maximedevos@HIDDEN> To: "Paul A. Patience" <paul@HIDDEN> Date: Mon, 02 May 2022 17:06:52 +0200 In-Reply-To: <877d74t20s.fsf@HIDDEN> References: <20220422010244.23280-1-paul@HIDDEN> <20220422010244.23280-5-paul@HIDDEN> <0cbdfb3ef04e504737782aa368021cdad9fe9404.camel@HIDDEN> <87a6cd6ik4.fsf@HIDDEN> <7e7b69f23148674b8fd003e5868c4a05e5acd364.camel@HIDDEN> <877d74t20s.fsf@HIDDEN> Content-Type: multipart/signed; micalg="pgp-sha512"; protocol="application/pgp-signature"; boundary="=-TShdTWEvoRGQnmhhp2Pl" User-Agent: Evolution 3.38.3-1 MIME-Version: 1.0 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=telenet.be; s=r22; t=1651504017; bh=EdusrzI6zZZiroGA/U1VmNWlNfAjmDPXakFRflkMj/k=; h=Subject:From:To:Cc:Date:In-Reply-To:References; b=cA5Hg5btPD2o+dh9Rbm7a3xE+/b1jdCxHtsrpkToQ49d1ZNpFPgcXvbwyduCJpb0d EhNhZz0lMQrM1WxoffO9FTFo01tleAktLSJlQf1CfS/N3Zo6YVeJEA2bCu2RTLIHai TAHfQ79HXVlmVpC1vl4/5kuv1LX7exIyn7wfE7gOQOWtVCcAW1vXcS//HeQcpIIw+m btd2lYdUT6SuIWcoQkNs0HtFfy/YAZ7J9DfFWWlO9MGJFkUgfsvfUw8rP32UTgMgWl xGufZF1t024bc55+2I45jLRj5cBHSOTTgzKIDK2zEI8TBJ2i2O6wJ641m4nneXehYw CqQipAGskyrWQ== X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55060 Cc: 55060 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) --=-TShdTWEvoRGQnmhhp2Pl Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Paul A. Patience schreef op ma 02-05-2022 om 15:00 [+0000]: > I suppose a python-pyvips-for-python-scooby that inherits from > python-pyvips while removing its propagated inputs would do. AFAICT, python-pyvips does not currently exist, at least according to "guix show python-pyvips". That said, maybe it could be depropagated (maybe there's no need for a package variant)? Greetings, Maxime. --=-TShdTWEvoRGQnmhhp2Pl Content-Type: application/pgp-signature; name="signature.asc" Content-Description: This is a digitally signed message part Content-Transfer-Encoding: 7bit -----BEGIN PGP SIGNATURE----- iI0EABYKADUWIQTB8z7iDFKP233XAR9J4+4iGRcl7gUCYm/zjBccbWF4aW1lZGV2 b3NAdGVsZW5ldC5iZQAKCRBJ4+4iGRcl7oihAQCiRPjjqDVq4V+Lxtbyu9jSDx3+ UmrlxRsbN4ejVMphrAD/bfWJxBuxGOADzfvqxF0QEOuZ9ETkE2VOJQwrRwkuYAE= =qlbQ -----END PGP SIGNATURE----- --=-TShdTWEvoRGQnmhhp2Pl--
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.Received: (at 55060) by debbugs.gnu.org; 2 May 2022 15:01:11 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Mon May 02 11:01:11 2022 Received: from localhost ([127.0.0.1]:37681 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nlXXz-0005pc-Ch for submit <at> debbugs.gnu.org; Mon, 02 May 2022 11:01:11 -0400 Received: from mail-4018.proton.ch ([185.70.40.18]:17801) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <paul@HIDDEN>) id 1nlXXt-0005ou-6b for 55060 <at> debbugs.gnu.org; Mon, 02 May 2022 11:01:10 -0400 Date: Mon, 02 May 2022 15:00:53 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1651503657; bh=gHGtTp6WnM89QIaRFtyUJcctEb4R2cxsULHv7s7Z8Qw=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:Feedback-ID:From:To:Cc:Date:Subject:Reply-To: Feedback-ID:Message-ID; b=TpppsiL/F2JFjcuw2eOSPxZ+gXAYiViS8QiZQQWW8DE3mR6v3x39Uy2r7QiaYvY80 sXAAUGd/pzTEL9iirKheLk44A/CdRw7+hU+U+PsMAH18XA1Q1dGGqZb7PtcF8JdfF+ PCP9oJyulY4VdPpjUlXtj/+kQQIcvShGuIhh4kl3cbMZNrJgK9B64/IzVy2e4Xpetk tn3iigFsSgZqieNijDw+XiudTu+rlUeGCmuakr4UDri9uPURwyoCHe/Wm/AILkpd2i 73yiZINod/o/kO9UzVO71mnPhhj3cmo6hAqw+5songB5IuhzWs/DIfgWja2s5zk1dq K4k/mlZvutnrQ== To: Maxime Devos <maximedevos@HIDDEN> From: "Paul A. Patience" <paul@HIDDEN> Subject: Re: [bug#55060] [PATCH 5/6] gnu: Add python-scooby. Message-ID: <877d74t20s.fsf@HIDDEN> In-Reply-To: <7e7b69f23148674b8fd003e5868c4a05e5acd364.camel@HIDDEN> References: <20220422010244.23280-1-paul@HIDDEN> <20220422010244.23280-5-paul@HIDDEN> <0cbdfb3ef04e504737782aa368021cdad9fe9404.camel@HIDDEN> <87a6cd6ik4.fsf@HIDDEN> <7e7b69f23148674b8fd003e5868c4a05e5acd364.camel@HIDDEN> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55060 Cc: 55060 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Reply-To: "Paul A. Patience" <paul@HIDDEN> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) On 2022-04-29 16:52:26-04:00, Maxime Devos wrote: > Upstream says we need to add 'pyvips' as listed in > test_requirements.txt. How would I add a python-pyvips native input that doesn't actually depend on the vips package? From my understanding of banesullivan's explanation [1], the test checks for the presence of pyvips in the absence of vips. I suppose a python-pyvips-for-python-scooby that inherits from python-pyvips while removing its propagated inputs would do. Best regards, Paul [1]: https://github.com/banesullivan/scooby/pull/74#issuecomment-1113703071
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.Received: (at 55060) by debbugs.gnu.org; 29 Apr 2022 20:52:35 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Fri Apr 29 16:52:35 2022 Received: from localhost ([127.0.0.1]:55442 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nkXbP-000704-9p for submit <at> debbugs.gnu.org; Fri, 29 Apr 2022 16:52:35 -0400 Received: from xavier.telenet-ops.be ([195.130.132.52]:47224) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <maximedevos@HIDDEN>) id 1nkXbM-0006zv-Qm for 55060 <at> debbugs.gnu.org; Fri, 29 Apr 2022 16:52:33 -0400 Received: from [192.168.242.254] ([188.189.208.33]) by xavier.telenet-ops.be with bizsmtp id QksW2700G0jmX9o01ksW9P; Fri, 29 Apr 2022 22:52:31 +0200 Message-ID: <7e7b69f23148674b8fd003e5868c4a05e5acd364.camel@HIDDEN> Subject: Re: [bug#55060] [PATCH 5/6] gnu: Add python-scooby. From: Maxime Devos <maximedevos@HIDDEN> To: "Paul A. Patience" <paul@HIDDEN> Date: Fri, 29 Apr 2022 22:52:26 +0200 In-Reply-To: <87a6cd6ik4.fsf@HIDDEN> References: <20220422010244.23280-1-paul@HIDDEN> <20220422010244.23280-5-paul@HIDDEN> <0cbdfb3ef04e504737782aa368021cdad9fe9404.camel@HIDDEN> <87a6cd6ik4.fsf@HIDDEN> Content-Type: multipart/signed; micalg="pgp-sha512"; protocol="application/pgp-signature"; boundary="=-dEZHS2IBZQBkm67Y56M3" User-Agent: Evolution 3.38.3-1 MIME-Version: 1.0 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=telenet.be; s=r22; t=1651265551; bh=AQ1tJW9QTuNDG50bLdIDTVSalbeQ5h6SV3Lm3ONQUYE=; h=Subject:From:To:Cc:Date:In-Reply-To:References; b=lW/hxy2fHKJ97Hifevk7KX8HJ8gNvB3nCbqVcX+jqIU6/5SpMai+jwDe2SQE5wRz0 eC1O5igOtHoG6pPxPIYok8Ra62yd3kY3kkm6mB2OaWveZQ82gjOub+3UtFibx37Ebx dqBIVPfhMhanIQc1zvO1+qgGTJguLN0QCTOzh/ixMOJAq61QClcSRmEnAGjmzSyGxJ z3kT9EB1vVKHdFQO4iykxwEPv9BYtO+fd6YkNwp0J0SC1Dy43mK+pCsP7bXyI3dsd5 m3fTl60+lysSfZ+joP8RBu0WMX84FaTdRHeTaJtZJ1tHtRvNo6tTd5c4PSRn+j3pN5 VtKlWpbTGF5iw== X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55060 Cc: 55060 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) --=-dEZHS2IBZQBkm67Y56M3 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Paul A. Patience schreef op vr 22-04-2022 om 19:26 [+0000]: > It seems the test suite expects the import of a missing package to throw > an OSError instead of a ModuleNotFoundError, which is not the case at > least on Python 3.9.9. > I don't know if it was different before. > I can add a comment to that effect. Upstream says we need to add 'pyvips' as listed in test_requirements.txt. Greetings, MAxime. --=-dEZHS2IBZQBkm67Y56M3 Content-Type: application/pgp-signature; name="signature.asc" Content-Description: This is a digitally signed message part Content-Transfer-Encoding: 7bit -----BEGIN PGP SIGNATURE----- iI0EABYKADUWIQTB8z7iDFKP233XAR9J4+4iGRcl7gUCYmxQChccbWF4aW1lZGV2 b3NAdGVsZW5ldC5iZQAKCRBJ4+4iGRcl7tP7AQDO6T/ADBkcU1khPpIt2QfNP8MH LmHvWIjPp3jKOWFbYwEAhfCB2WJI9yN81SwoGK7Sdy7QWZCtxN2rjiy0LHAL8Ac= =Ibw2 -----END PGP SIGNATURE----- --=-dEZHS2IBZQBkm67Y56M3--
guix-patches@HIDDEN:bug#55060; Package guix-patches.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v3 6/6] gnu: Add python-pyvista.
Message-ID: <20220425175515.54516-7-paul@HIDDEN>
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* gnu/packages/python-science.scm (python-pyvista): New variable.
---
gnu/packages/python-science.scm | 53 +++++++++++++++++++++++++++++++++
1 file changed, 53 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.=
scm
index 07d713e013..4205bdc425 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -17,6 +17,7 @@
;;; Copyright =C2=A9 2021 Felix Gruber <felgru@HIDDEN>
;;; Copyright =C2=A9 2022 Malte Frank Gerdes <malte.f.gerdes@HIDDEN>
;;; Copyright =C2=A9 2022 Guillaume Le Vaillant <glv@HIDDEN>
+;;; Copyright =C2=A9 2022 Paul A. Patience <paul@HIDDEN>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -1183,3 +1184,55 @@ (define-public python-numpy-groupies
"This package provides optimized tools for group-indexing operations:
aggregated sum and more.")
(license license:bsd-3)))
+
+(define-public python-pyvista
+ (package
+ (name "python-pyvista")
+ (version "0.34.0")
+ (source
+ ;; The PyPI tarball does not contain the tests.
+ ;; (However, we don't yet actually run the tests.)
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/pyvista/pyvista")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0f2x2wvi5pkpv5h3jrnx8zxnaj51navfqp2fdna1l9rpjgjjf94g"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ (list python-appdirs
+ python-imageio
+ python-matplotlib
+ python-meshio
+ python-numpy
+ python-pillow
+ python-scooby
+ vtk))
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ ;; Disable tests for now because they require several modules
+ ;; currently unpackaged in Guix.
+ (delete 'check)
+ ;; Disable the sanity check, which fails with the following error=
:
+ ;;
+ ;; ...checking requirements: ERROR: pyvista=3D=3D0.34.0 Distrib=
utionNotFound(Requirement.parse('vtk'), {'pyvista'})
+ (delete 'sanity-check))))
+ (home-page "https://docs.pyvista.org/")
+ (synopsis "3D plotting and mesh analysis through VTK")
+ (description
+ "PyVista is...
+
+@itemize
+@item @emph{Pythonic VTK}: a high-level API to the Visualization
+Toolkit (VTK);
+@item mesh data structures and filtering methods for spatial datasets;
+@item 3D plotting made simple and built for large/complex data geometries.
+@end itemize
+
+This package provides a Pythonic, well-documented interface exposing VTK's
+powerful visualization backend to facilitate rapid prototyping, analysis, =
and
+visual integration of spatially referenced datasets.")
+ (license license:expat)))
--
2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
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From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v3 5/6] gnu: Add python-scooby.
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* gnu/packages/python-xyz.scm (python-scooby): New variable.
---
gnu/packages/python-xyz.scm | 67 +++++++++++++++++++++++++++++++++++++
1 file changed, 67 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 9a5d311680..1eeec2564e 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -119,6 +119,7 @@
;;; Copyright =C2=A9 2022 Evgeny Pisemsky <evgeny@HIDDEN>
;;; Copyright =C2=A9 2022 drozdov <drozdov@HIDDEN>
;;; Copyright =C2=A9 2022 Peter Polidoro <peter@HIDDEN>
+;;; Copyright =C2=A9 2022 Paul A. Patience <paul@HIDDEN>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -29534,3 +29535,69 @@ (define-public python-sre-yield
uses the parsed regular expression, so you get a much more accurate result
than trying to just split strings.")
(license license:asl2.0)))
+
+(define-public python-scooby
+ (package
+ (name "python-scooby")
+ (version "0.5.12")
+ (source
+ ;; The PyPI tarball does not contain the tests.
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/banesullivan/scooby")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1gkpmz8wl3jg8ylf1na35308sznw2g9wx33zqlyq5i2gpy2ml9mw"))))
+ (build-system python-build-system)
+ (native-inputs
+ (list python-beautifulsoup4
+ python-numpy
+ python-pytest
+ python-pytest-cov
+ python-scipy))
+ (propagated-inputs
+ (list python-psutil))
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-tests
+ (lambda _
+ (substitute* "tests/test_scooby.py"
+ ;; The test suite uses the no-version PyPI package
+ ;; (https://pypi.org/project/no-version/),
+ ;; but it doesn't seem worth packaging in Guix just for thi=
s.
+ (("scooby\\.report\\.VERSION_NOT_FOUND")
+ "scooby.report.MODULE_NOT_FOUND")
+ (("^ +import no_version # noqa.*") "")
+ ;; The test suite expects an OSError when importing a missi=
ng
+ ;; module.
+ ;; However, a ModuleNotFoundError is thrown.
+ (("with pytest\\.raises\\(OSError\\):")
+ "with pytest.raises(ModuleNotFoundError):"))))
+ (replace 'check
+ (lambda* (#:key tests? inputs outputs #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "pytest")))))))
+ (home-page "https://github.com/banesullivan/scooby")
+ (synopsis "Report hardware information and Python package versions")
+ (description
+ "The Scooby package reports the following information about the curre=
ntly
+running system:
+
+@itemize
+@item operating system name;
+@item hardware information including machine type (e.g., @samp{i386},
+@samp{x86_64}, etc.), CPU count and total RAM;
+@item Python environment (e.g., Python, IPython, etc.);
+@item file system name;
+@item Python version;
+@item versions of specified Python packages.
+@end itemize
+
+It can generate reports as HTML tables or plain text lists.
+
+Scooby has no required dependencies, and only few optional dependencies.")
+ (license license:expat)))
--
2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v3 4/6] gnu: python-meshio: Update to 5.3.4.
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* gnu/packages/simulation.scm (python-meshio): Update to 5.3.4.
[source]: Reindent.
[propagated-inputs]: Add python-rich.
---
gnu/packages/simulation.scm | 25 +++++++++++++------------
1 file changed, 13 insertions(+), 12 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 1b4016e316..e829f8cd7d 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -773,18 +773,18 @@ (define-public fullswof-2d
(define-public python-meshio
(package
(name "python-meshio")
- (version "4.4.6")
+ (version "5.3.4")
(source
- (origin
- (method url-fetch)
- (uri (pypi-uri "meshio" version))
- (sha256
- (base32
- "0kv832s2vyff30zz8yqypw5jifwdanvh5x56d2bzkvy94h4jlddy"))
- (snippet
- '(let ((file (open-file "setup.py" "a")))
- (display "from setuptools import setup\nsetup()" file)
- (close-port file)))))
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "meshio" version))
+ (sha256
+ (base32
+ "1w39qcg0rw5kb04j7sa45fnqd6k20fsdgrf62cmw2ygjgwnnjh72"))
+ (snippet
+ '(let ((file (open-file "setup.py" "a")))
+ (display "from setuptools import setup\nsetup()" file)
+ (close-port file)))))
(build-system python-build-system)
(inputs
(list python-h5py
@@ -793,7 +793,8 @@ (define-public python-meshio
(list python-pytest))
(propagated-inputs
(list python-importlib-metadata
- python-numpy))
+ python-numpy
+ python-rich))
(arguments
`(#:phases
(modify-phases %standard-phases
--
2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v3 3/6] gnu: python-meshio: Honor #:tests? flag.
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* gnu/packages/simulation.scm (python-meshio)[arguments]: Adjust custom
'check' phase to honor the #:tests? flag.
---
gnu/packages/simulation.scm | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 42383bf486..1b4016e316 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -798,9 +798,10 @@ (define-public python-meshio
`(#:phases
(modify-phases %standard-phases
(replace 'check
- (lambda* (#:key outputs inputs #:allow-other-keys)
- (add-installed-pythonpath inputs outputs)
- (invoke "python" "-m" "pytest" "-v" "tests"))))))
+ (lambda* (#:key tests? outputs inputs #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "python" "-m" "pytest" "-v" "tests")))))))
(home-page "https://github.com/nschloe/meshio")
(synopsis "I/O for mesh files")
(description "There are various file formats available for
--
2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v3 2/6] gnu: python-meshio: Remove trailing booleans.
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* gnu/packages/simulation.scm (python-meshio)[snippet]: Remove trailing
boolean (and therefore the 'begin').
[arguments]: Remove trailing boolean.
---
gnu/packages/simulation.scm | 11 ++++-------
1 file changed, 4 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index c8309761d2..42383bf486 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -782,11 +782,9 @@ (define-public python-meshio
(base32
"0kv832s2vyff30zz8yqypw5jifwdanvh5x56d2bzkvy94h4jlddy"))
(snippet
- '(begin
- (let ((file (open-file "setup.py" "a")))
- (display "from setuptools import setup\nsetup()" file)
- (close-port file))
- #t))))
+ '(let ((file (open-file "setup.py" "a")))
+ (display "from setuptools import setup\nsetup()" file)
+ (close-port file)))))
(build-system python-build-system)
(inputs
(list python-h5py
@@ -802,8 +800,7 @@ (define-public python-meshio
(replace 'check
(lambda* (#:key outputs inputs #:allow-other-keys)
(add-installed-pythonpath inputs outputs)
- (invoke "python" "-m" "pytest" "-v" "tests")
- #t)))))
+ (invoke "python" "-m" "pytest" "-v" "tests"))))))
(home-page "https://github.com/nschloe/meshio")
(synopsis "I/O for mesh files")
(description "There are various file formats available for
--
2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v3 1/6] gnu: python-meshio: Remove input labels.
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* gnu/packages/simulation.scm (python-meshio)[inputs, native-inputs,
propagated-inputs]: Remove labels.
---
gnu/packages/simulation.scm | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 3f2d8e136d..c8309761d2 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -789,13 +789,13 @@ (define-public python-meshio
#t))))
(build-system python-build-system)
(inputs
- `(("h5py" ,python-h5py)
- ("netcdf4" ,python-netcdf4)))
+ (list python-h5py
+ python-netcdf4))
(native-inputs
- `(("pytest" ,python-pytest)))
+ (list python-pytest))
(propagated-inputs
- `(("importlib-metadata" ,python-importlib-metadata)
- ("numpy" ,python-numpy)))
+ (list python-importlib-metadata
+ python-numpy))
(arguments
`(#:phases
(modify-phases %standard-phases
--
2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.Received: (at 55060) by debbugs.gnu.org; 25 Apr 2022 17:55:42 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Mon Apr 25 13:55:42 2022 Received: from localhost ([127.0.0.1]:35987 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nj2w1-0001i6-Nd for submit <at> debbugs.gnu.org; Mon, 25 Apr 2022 13:55:41 -0400 Received: from mail-4022.proton.ch ([185.70.40.22]:17174) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <paul@HIDDEN>) id 1nj2vy-0001hq-KG for 55060 <at> debbugs.gnu.org; Mon, 25 Apr 2022 13:55:40 -0400 Date: Mon, 25 Apr 2022 17:55:23 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650909331; bh=TvkQyhYcGVJqFh2Z9Z+wtpHxrDlyO8tER5TbTZINNOA=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:Feedback-ID:From:To: Cc:Date:Subject:Reply-To:Feedback-ID:Message-ID; b=Ij3KBO9a8YwzHwfgiu2GRUDZ2aHDVUgxf+rXVkXghqaPxYgSeGMiF23WYrpF/6EKL Bio1epiCzVT8hIoXvDmdJy404IFK7cb6ivIxFQwVyZIfUgFEVC86Coo9rSVMWWt01z wgafKp6bxiCzxz/hpCohbB5HQ6d4aBvau8XQEgoIY+ZeO85z7cA+TKkIhdD34ZUwoH LiKasDhulp1orTwnml6Ls7UEG7OniOp7PA8St+eQrlVUrgPlhstKa0n0kQmVXR0PeK 7cGLH+8pGvqCfE+ML1uoq/RHXhhk1BKD/9n/s1J6exEpWIpHIWTvISbqpURadoWeJz Ahzua0fdAVOww== To: 55060 <at> debbugs.gnu.org From: "Paul A. Patience" <paul@HIDDEN> Subject: [PATCH v3 0/6] gnu: Add python-pyvista. Message-ID: <20220425175515.54516-1-paul@HIDDEN> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55060 Cc: "Paul A. Patience" <paul@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Reply-To: "Paul A. Patience" <paul@HIDDEN> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) Updated patch series taking into account Maxime Devos's comments on package synopses and descriptions (particularly for python-scooby, but I also updat= ed python-pyvista's description). Paul A. Patience (6): gnu: python-meshio: Remove input labels. gnu: python-meshio: Remove trailing booleans. gnu: python-meshio: Honor #:tests? flag. gnu: python-meshio: Update to 5.3.4. gnu: Add python-scooby. gnu: Add python-pyvista. gnu/packages/python-science.scm | 53 ++++++++++++++++++++++++++ gnu/packages/python-xyz.scm | 67 +++++++++++++++++++++++++++++++++ gnu/packages/simulation.scm | 43 +++++++++++---------- 3 files changed, 141 insertions(+), 22 deletions(-) -- 2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.Received: (at 55060) by debbugs.gnu.org; 22 Apr 2022 21:49:31 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Fri Apr 22 17:49:31 2022 Received: from localhost ([127.0.0.1]:54798 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1ni19f-0004m7-Ar for submit <at> debbugs.gnu.org; Fri, 22 Apr 2022 17:49:31 -0400 Received: from laurent.telenet-ops.be ([195.130.137.89]:37352) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <maximedevos@HIDDEN>) id 1ni19d-0004lx-9L for 55060 <at> debbugs.gnu.org; Fri, 22 Apr 2022 17:49:29 -0400 Received: from ptr-bvsjgyhxw7psv60dyze.18120a2.ip6.access.telenet.be ([IPv6:2a02:1811:8c09:9d00:3c5f:2eff:feb0:ba5a]) by laurent.telenet-ops.be with bizsmtp id MxpU270024UW6Th01xpUho; Fri, 22 Apr 2022 23:49:28 +0200 Message-ID: <1b12a87248441cbc918adbbbb748dafa5226efdb.camel@HIDDEN> Subject: Re: [bug#55060] [PATCH 6/6] gnu: Add python-pyvista. From: Maxime Devos <maximedevos@HIDDEN> To: "Paul A. Patience" <paul@HIDDEN> Date: Fri, 22 Apr 2022 23:49:27 +0200 In-Reply-To: <87bkws6hhn.fsf@HIDDEN> References: <20220422010244.23280-1-paul@HIDDEN> <20220422010244.23280-6-paul@HIDDEN> <3e9933ecb1736b90c091f9733ea738e36a7d2aea.camel@HIDDEN> <87bkws6hhn.fsf@HIDDEN> Content-Type: multipart/signed; micalg="pgp-sha512"; protocol="application/pgp-signature"; boundary="=-N54E4Dotgx8Lla57tnGk" User-Agent: Evolution 3.38.3-1 MIME-Version: 1.0 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=telenet.be; s=r22; t=1650664168; bh=Mrvjwz/8nm9PhH23rYE6m7My16s1cqy+BJg+WvFv6D0=; h=Subject:From:To:Cc:Date:In-Reply-To:References; b=mdxYiav9JkH/RfzyEuPhW9JrfhjlV1Eo0HrfH7GS0qW7b5UJeIL5w7D1QnVJAbmKc Oa3m2s1U3XSjePNL9fLqfM0fIgt/idF2bPqo7Y7+nI63X27q4pwUZRvxjEq18k+Ofe 4lUiEMAAtw2+px4hIp7vt/GwMuTTz+6ADH5PvCjM4779V22AjdOWrh3knZaKnXRpfU uuyFO3JJyMC9Zw/vWu225j5BfYWy+xVzPrLMtowmUqtYJKlqLJCwnPvGAAiiKCJT3+ sUIbvqWPPpgGgYXyQqiZ+r1BG1UvLp91+FXlcKOMjfy+e9ZDquMCk17NI0yWQU/2JW YzVGk7xqUXP7w== X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55060 Cc: 55060 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) --=-N54E4Dotgx8Lla57tnGk Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Paul A. Patience schreef op vr 22-04-2022 om 19:36 [+0000]: > vtk.py is indeed there. > Also, I am able to "import vtk" in a Python repl. > I'm not sure why the sanity check cannot find vtk.py, then. > This sanity check issue also plagues the python-vedo package, and I > don't know how to fix it. > (However, obviously the last line of the comment is incorrect.) A guess: maybe whatever 'sanity-check' indirectly uses, expects the dependencies to have an 'egg-info', which appears to be the case for (most?) python-build-system packages, but not for whatever vtk does. Greetings, Maxime --=-N54E4Dotgx8Lla57tnGk Content-Type: application/pgp-signature; name="signature.asc" Content-Description: This is a digitally signed message part Content-Transfer-Encoding: 7bit -----BEGIN PGP SIGNATURE----- iI0EABYKADUWIQTB8z7iDFKP233XAR9J4+4iGRcl7gUCYmMi6BccbWF4aW1lZGV2 b3NAdGVsZW5ldC5iZQAKCRBJ4+4iGRcl7oS4AQDy3TBqLcjzsPXCVIl0BOWmmr+R XkKYpMoUX5ajuMJ0NwEAisMTQnwsVuCQdv7tPJKJM2WGC2s4VcHpaaZMS14c5Qo= =MuYE -----END PGP SIGNATURE----- --=-N54E4Dotgx8Lla57tnGk--
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Subject: Re: [bug#55060] [PATCH 5/6] gnu: Add python-scooby.
From: Maxime Devos <maximedevos@HIDDEN>
To: "Paul A. Patience" <paul@HIDDEN>
Date: Fri, 22 Apr 2022 23:46:45 +0200
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Paul A. Patience schreef op vr 22-04-2022 om 19:26 [+0000]:
> The setup.py file lists psutil and mkl in extras_require, meaning they
> are optional.
The manual has the following to say about optional dependencies:
=E2=80=A2 If a Python package has optional dependencies (=E2=80=98extras=
_require=E2=80=99),
it is up to you to decide whether to add them or not, based on
their usefulness/overhead ratio (*note =E2=80=98guix size=E2=80=99: Su=
bmitting
Patches.).
I don't know if this changes anything here.
> mkl (https://pypi.org/project/mkl/) is released under the Intel
> Simplified Software License, which I suspect is ideologically
> incompatible with Guix (and therefore not already packaged for Guix), so
> I didn't include it.
Ok -- the pypi.org page even says =E2=80=98proprietary license=E2=80=99!
Greetings,
Maxime.
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guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.Received: (at 55060) by debbugs.gnu.org; 22 Apr 2022 21:43:45 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Fri Apr 22 17:43:45 2022 Received: from localhost ([127.0.0.1]:54788 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1ni145-0004Xq-FS for submit <at> debbugs.gnu.org; Fri, 22 Apr 2022 17:43:45 -0400 Received: from laurent.telenet-ops.be ([195.130.137.89]:33288) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <maximedevos@HIDDEN>) id 1ni143-0004Xg-Ia for 55060 <at> debbugs.gnu.org; Fri, 22 Apr 2022 17:43:44 -0400 Received: from ptr-bvsjgyhxw7psv60dyze.18120a2.ip6.access.telenet.be ([IPv6:2a02:1811:8c09:9d00:3c5f:2eff:feb0:ba5a]) by laurent.telenet-ops.be with bizsmtp id Mxjh2700J4UW6Th01xjhLW; Fri, 22 Apr 2022 23:43:42 +0200 Message-ID: <450bea08b9dfed716dc272d3271c6bc4a08422e0.camel@HIDDEN> Subject: Re: [bug#55060] [PATCH 5/6] gnu: Add python-scooby. From: Maxime Devos <maximedevos@HIDDEN> To: "Paul A. Patience" <paul@HIDDEN> Date: Fri, 22 Apr 2022 23:43:41 +0200 In-Reply-To: <87a6cd6ik4.fsf@HIDDEN> References: <20220422010244.23280-1-paul@HIDDEN> <20220422010244.23280-5-paul@HIDDEN> <0cbdfb3ef04e504737782aa368021cdad9fe9404.camel@HIDDEN> <87a6cd6ik4.fsf@HIDDEN> Content-Type: multipart/signed; micalg="pgp-sha512"; protocol="application/pgp-signature"; boundary="=-MCcmMbrUzPHUZvo8aKD8" User-Agent: Evolution 3.38.3-1 MIME-Version: 1.0 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=telenet.be; s=r22; t=1650663822; bh=XKpN+qi9RovdnVZjbraF83GzviZOCHpLOY4AkWOuVF8=; h=Subject:From:To:Cc:Date:In-Reply-To:References; b=L1hA8nTZV1tIFz1oGbSiZejdIACPDzX8Y1gtAMOSHaS6/xWN/uAWdPQDF4XE9KIbv vkrffhz2vKWHPjEz8sm1m1zI0oTsvy+RDfKvvYkYmweZYSGExZvuwMMTNKIdGOy7/8 qMTazu4DVUHScWmepxBsW9ywW7S7i295BU/8aXULP7dthA+rUawIbyBgjFNQOWFY3b b2RQhpMBtgq5h8Tq2GIZrRqiTTvLlFupfzW9vM8xGY+WjIeMDGLEjdfXARf5Ag2hfQ C2tUva8pQaH2ubYP1+9iHna8Tu1Oplxc+c2Dq2SSmdtepqqiW6Pp7N6yCjbu2ipCeV DOaeRYwNyGYBg== X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55060 Cc: 55060 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) --=-MCcmMbrUzPHUZvo8aKD8 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Paul A. Patience schreef op vr 22-04-2022 om 19:26 [+0000]: > It seems the test suite expects the import of a missing package to throw > an OSError instead of a ModuleNotFoundError, which is not the case at > least on Python 3.9.9. > I don't know if it was different before. > I can add a comment to that effect. This version incompatibility seems like something upstream needs to know about. I've commented upstream at <https://github.com/banesullivan/scooby/pull/74>. Greetings, Maxime. --=-MCcmMbrUzPHUZvo8aKD8 Content-Type: application/pgp-signature; name="signature.asc" Content-Description: This is a digitally signed message part Content-Transfer-Encoding: 7bit -----BEGIN PGP SIGNATURE----- iI0EABYKADUWIQTB8z7iDFKP233XAR9J4+4iGRcl7gUCYmMhjRccbWF4aW1lZGV2 b3NAdGVsZW5ldC5iZQAKCRBJ4+4iGRcl7qlsAP9SI2H3NhScObO2iuKUd6R8uAHD Pj05GfEyKNFfIVHNnwEAjKKHF+sldWScS16/cfeCEGYTXKb7v1hprNDVPeJUCwU= =3mht -----END PGP SIGNATURE----- --=-MCcmMbrUzPHUZvo8aKD8--
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To: Maxime Devos <maximedevos@HIDDEN>
From: "Paul A. Patience" <paul@HIDDEN>
Subject: Re: [bug#55060] [PATCH 6/6] gnu: Add python-pyvista.
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On 2022-04-22 14:04:03-04:00, Maxime Devos wrote:
> Paul A. Patience schreef op vr 22-04-2022 om 01:03 [+0000]:
>> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 ;; Disable tests for n=
ow because they require several modules
>> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 ;; currently unpackage=
d in Guix.
>> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 (delete 'check)
>> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 ;; Disable the sanity =
check, which fails with the following error:
>> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 ;;
>> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 ;;=C2=A0=C2=A0 ...chec=
king requirements: ERROR: pyvista=3D=3D0.34.0 DistributionNotFound(Requirem=
ent.parse('vtk'), {'pyvista'})
>> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 ;;
>> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 ;; Probably it cannot =
find VTK because it isn't a Python library.
>
> vtk is (among other things) a Python library, try building vtk and
> looking into lib/python3.9/site-packages/vtk.py.
vtk.py is indeed there.
Also, I am able to "import vtk" in a Python repl.
I'm not sure why the sanity check cannot find vtk.py, then.
This sanity check issue also plagues the python-vedo package, and I
don't know how to fix it.
(However, obviously the last line of the comment is incorrect.)
> As such, shouldn't 'vtk' be in propagated-inputs, such that when
> dependents use 'python-pyvista', the vtk libraries will actually be
> found?
I fixed this in the v2 series.
Best regards,
Paul
guix-patches@HIDDEN:bug#55060; Package guix-patches.
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To: Maxime Devos <maximedevos@HIDDEN>
From: "Paul A. Patience" <paul@HIDDEN>
Subject: Re: [bug#55060] [PATCH 5/6] gnu: Add python-scooby.
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Hello Maxime,
I will reply to all of your comments below.
On 2022-04-22 13:53:46-04:00, Maxime Devos wrote:
> The 'python-' prefix is only for library-only python packages. As it
> is a called tool, I assume there is some bin/scooby binary that the
> user would run?
It may be called a tool, but it is only a library, meant to be used from
other libraries.
The readme describes the basic usage as follows:
import scooby
scooby.Report()
On 2022-04-22 13:55:59-04:00, Maxime Devos wrote:
> Paul A. Patience schreef op vr 22-04-2022 om 01:03 [+0000]:
>> +=C2=A0=C2=A0=C2=A0 (native-inputs
>> +=C2=A0=C2=A0=C2=A0=C2=A0 (list python-beautifulsoup4
>> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 python-num=
py
>> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 python-pyt=
est
>> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 python-pyt=
est-cov
>> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 python-sci=
py))
>> [no 'inputs' or 'propagated-inputs']
>
> Are these sufficient? According to
> <https://github.com/banesullivan/scooby/blob/main/requirements.txt>,
> there is also a dependency on 'psutil' and 'mkl'. I have also found
> references to those in non-test code.
The setup.py file lists psutil and mkl in extras_require, meaning they
are optional.
mkl (https://pypi.org/project/mkl/) is released under the Intel
Simplified Software License, which I suspect is ideologically
incompatible with Guix (and therefore not already packaged for Guix), so
I didn't include it.
I omitted psutil just because I was omitting mkl, but I can add it as a
propagated input.
On 2022-04-22 14:07:43-04:00, Maxime Devos wrote:
> Paul A. Patience schreef op vr 22-04-2022 om 01:03 [+0000]:
>> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=
=C2=A0=C2=A0=C2=A0 (("with pytest\\.raises\\(OSError\\):")
>> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=
=C2=A0=C2=A0=C2=A0=C2=A0 "with pytest.raises(ModuleNotFoundError):"))))
>
> What is this for?
It seems the test suite expects the import of a missing package to throw
an OSError instead of a ModuleNotFoundError, which is not the case at
least on Python 3.9.9.
I don't know if it was different before.
I can add a comment to that effect.
On 2022-04-22 13:51:26-04:00, Maxime Devos wrote:
> Paul A. Patience schreef op vr 22-04-2022 om 12:41 [+0000]:
>> +=C2=A0=C2=A0=C2=A0 (synopsis "Great Dane turned Python environment dete=
ctive")
>
> What does this package have to do with Denmark and detectives?
>
> Looking further, =E2=80=98Great Dane=E2=80=99 appears to be some dog bree=
d, and I guess
> it's a pun on the package name and Scooby-Doo. However, I don't think
> this is useful for users looking for packages that suit their needs.
>
>> +=C2=A0=C2=A0=C2=A0 (description
>> +=C2=A0=C2=A0=C2=A0=C2=A0 "This is a lightweight tool for easily reporti=
ng your Python
>> +environment's package versions and hardware resources.")
>
> Isn't this just =E2=80=98guix package --list-installed=3D^python=E2=80=
=99?
> What hardware resources does it report? CPU models? Disk
> manufacturers? =C2=A0The attached peripherals? Non-physical peripherals
> like e.g. bluetooth mice? The amount of ductape holding the computer
> together? Information about the printer? ...
>
> ALso, lightweight and easy is rather subjective. Compares to lscpu,
> lspci, ..., (which are simple C tools IIUC) depending on python and
> python-scipy doesn't seem lightweight to me. =E2=80=98(guix)Synopses and
> Descriptions=E2=80=99 recommends staying factual.
The synopsis and description are taken wholesale from Scooby's readme.
However, I can rewrite them.
Best regards,
Paul
guix-patches@HIDDEN:bug#55060; Package guix-patches.
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Subject: Re: [bug#55060] [PATCH 6/6] gnu: Add python-pyvista.
From: Maxime Devos <maximedevos@HIDDEN>
To: "Paul A. Patience" <paul@HIDDEN>, 55060 <at> debbugs.gnu.org
Date: Fri, 22 Apr 2022 20:04:03 +0200
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Paul A. Patience schreef op vr 22-04-2022 om 01:03 [+0000]:
> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 ;; Disable tests for no=
w because they require several modules
> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 ;; currently unpackaged=
in Guix.
> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 (delete 'check)
> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 ;; Disable the sanity c=
heck, which fails with the following error:
> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 ;;
> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 ;;=C2=A0=C2=A0 ...check=
ing requirements: ERROR: pyvista=3D=3D0.34.0 DistributionNotFound(Requireme=
nt.parse('vtk'), {'pyvista'})
> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 ;;
> +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 ;; Probably it cannot f=
ind VTK because it isn't a Python library.
vtk is (among other things) a Python library, try building vtk and
looking into lib/python3.9/site-packages/vtk.py.
As such, shouldn't 'vtk' be in propagated-inputs, such that when
dependents use 'python-pyvista', the vtk libraries will actually be
found?
Greetings,
Maxime
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guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.Received: (at 55060) by debbugs.gnu.org; 22 Apr 2022 17:56:02 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Fri Apr 22 13:56:02 2022 Received: from localhost ([127.0.0.1]:54646 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nhxVh-0004HS-Pn for submit <at> debbugs.gnu.org; Fri, 22 Apr 2022 13:56:01 -0400 Received: from andre.telenet-ops.be ([195.130.132.53]:50138) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <maximedevos@HIDDEN>) id 1nhxVg-0004HK-Hb for 55060 <at> debbugs.gnu.org; Fri, 22 Apr 2022 13:56:00 -0400 Received: from ptr-bvsjgyhxw7psv60dyze.18120a2.ip6.access.telenet.be ([IPv6:2a02:1811:8c09:9d00:3c5f:2eff:feb0:ba5a]) by andre.telenet-ops.be with bizsmtp id Mtvz2700T4UW6Th01tvzKb; Fri, 22 Apr 2022 19:55:59 +0200 Message-ID: <f16fea35e3ccf2fe27b4e0e23912e80c50ecdf94.camel@HIDDEN> Subject: Re: [bug#55060] [PATCH 5/6] gnu: Add python-scooby. From: Maxime Devos <maximedevos@HIDDEN> To: "Paul A. Patience" <paul@HIDDEN>, 55060 <at> debbugs.gnu.org Date: Fri, 22 Apr 2022 19:55:59 +0200 In-Reply-To: <20220422010244.23280-5-paul@HIDDEN> References: <20220422010244.23280-1-paul@HIDDEN> <20220422010244.23280-5-paul@HIDDEN> Content-Type: multipart/signed; micalg="pgp-sha512"; protocol="application/pgp-signature"; boundary="=-rZ7YQfLOac06vVB0C/Vr" User-Agent: Evolution 3.38.3-1 MIME-Version: 1.0 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=telenet.be; s=r22; t=1650650159; bh=/nd5sQbJhjFQ7xRUXqJnAgP9Jo7TbpsD+8ffad6hm+Q=; h=Subject:From:To:Date:In-Reply-To:References; b=j+qnqnpXsewKIZ2+S9yXlTU1N2a+3ZvBxYdleqfXiu34+oERrskIvFK3oqP1IC7jV uh8A1vp6Zj4YkSa0zTRFDG1ZiiRWSN96jl+7GJNJYi2QCOX0r+MVboCUI1yeH7Hn52 eGfleQby75Ir4Iq39G0vI9FTsDh79kzTNtT/E7+cxEfNMmInpvkGMoN03DXHwBm2zN JXI9NLu621HkLCAEG5hX/rf3fYokgdfJMRG4no+f+8ddxiIdTgYWHXZmJHWBP5WbIv caK12+hsk7YgOJV3dp6s/+tQua5Ind4a9DozGV51SYkD6Z5UgqxEhPetj2oa7KZqDG AJEVfwUF/LyYA== X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55060 X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) --=-rZ7YQfLOac06vVB0C/Vr Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Paul A. Patience schreef op vr 22-04-2022 om 01:03 [+0000]: > +=C2=A0=C2=A0=C2=A0 (native-inputs > +=C2=A0=C2=A0=C2=A0=C2=A0 (list python-beautifulsoup4 > +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 python-nump= y > +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 python-pyte= st > +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 python-pyte= st-cov > +=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 python-scip= y)) > [no 'inputs' or 'propagated-inputs'] Are these sufficient? According to <https://github.com/banesullivan/scooby/blob/main/requirements.txt>, there is also a dependency on 'psutil' and 'mkl'. I have also found references to those in non-test code. Greetings, Maxime. --=-rZ7YQfLOac06vVB0C/Vr Content-Type: application/pgp-signature; name="signature.asc" Content-Description: This is a digitally signed message part Content-Transfer-Encoding: 7bit -----BEGIN PGP SIGNATURE----- iI0EABYKADUWIQTB8z7iDFKP233XAR9J4+4iGRcl7gUCYmLsLxccbWF4aW1lZGV2 b3NAdGVsZW5ldC5iZQAKCRBJ4+4iGRcl7vcsAQDnatxRQsM62b/um2lLHLuopZoR qNlV/LUw0QTc2LoDoQEAjLXnAdx5+hPa0WCvbRYHtLQAxFLJkSIRApXP7Ezg1gM= =vnPT -----END PGP SIGNATURE----- --=-rZ7YQfLOac06vVB0C/Vr--
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.Received: (at 55060) by debbugs.gnu.org; 22 Apr 2022 17:53:49 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Fri Apr 22 13:53:49 2022 Received: from localhost ([127.0.0.1]:54641 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nhxTZ-0004E9-EV for submit <at> debbugs.gnu.org; Fri, 22 Apr 2022 13:53:49 -0400 Received: from andre.telenet-ops.be ([195.130.132.53]:47618) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <maximedevos@HIDDEN>) id 1nhxTY-0004E1-7j for 55060 <at> debbugs.gnu.org; Fri, 22 Apr 2022 13:53:48 -0400 Received: from ptr-bvsjgyhxw7psv60dyze.18120a2.ip6.access.telenet.be ([IPv6:2a02:1811:8c09:9d00:3c5f:2eff:feb0:ba5a]) by andre.telenet-ops.be with bizsmtp id Mttn270044UW6Th01ttn1C; Fri, 22 Apr 2022 19:53:47 +0200 Message-ID: <999be63d652cfdbc1192076253925802b037e42d.camel@HIDDEN> Subject: Re: [bug#55060] [PATCH 5/6] gnu: Add python-scooby. From: Maxime Devos <maximedevos@HIDDEN> To: "Paul A. Patience" <paul@HIDDEN>, 55060 <at> debbugs.gnu.org Date: Fri, 22 Apr 2022 19:53:46 +0200 In-Reply-To: <20220422010244.23280-5-paul@HIDDEN> References: <20220422010244.23280-1-paul@HIDDEN> <20220422010244.23280-5-paul@HIDDEN> Content-Type: multipart/signed; micalg="pgp-sha512"; protocol="application/pgp-signature"; boundary="=-GfGCIeiIbtPTewlJgPFX" User-Agent: Evolution 3.38.3-1 MIME-Version: 1.0 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=telenet.be; s=r22; t=1650650027; bh=NXX3vr++vzDJ2/klVwJu/Oc1bgR8LshNChV0cS3X6Uw=; h=Subject:From:To:Date:In-Reply-To:References; b=Wa3MeGKLBRJjNGuM63ezZSHQEbH70781DEckV1UKpoxCgr/5MaD8VEj1H0idPxR9u pOlAIQoQuMjMySK/jdis4hKJpfUO7BPyxN1M5DchNTZw59RzVG+ObnpYm5YtJ8Y5dk 9htqgDi2+BbyM8/fDUS87Ob5H5F99sWWomxc5nnieq/GlYqJsWGcz00Zbd0E9a0b8U jUgxHwvUiUmdx5srAuAJsnHAcGzwDelQ2PpkD4Z7ESkfwt1/wYvY+6vnRbYjj0/w7v mm8ewZ++tDqh6rbjOrNrCO49PZBaTcAfCs7XbJFwx3c9EDbLKmIRaBPeQ0SYWF+E9V lEvrHrLAGPxZw== X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55060 X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) --=-GfGCIeiIbtPTewlJgPFX Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Paul A. Patience schreef op vr 22-04-2022 om 01:03 [+0000]: > + > +(define-public python-scooby > +=C2=A0 (package > +=C2=A0=C2=A0=C2=A0 (name "python-scooby") The 'python-' prefix is only for library-only python packages. As it is a called tool, I assume there is some bin/scooby binary that the user would run?=20 Greetings, Maxime. --=-GfGCIeiIbtPTewlJgPFX Content-Type: application/pgp-signature; name="signature.asc" Content-Description: This is a digitally signed message part Content-Transfer-Encoding: 7bit -----BEGIN PGP SIGNATURE----- iI0EABYKADUWIQTB8z7iDFKP233XAR9J4+4iGRcl7gUCYmLrqhccbWF4aW1lZGV2 b3NAdGVsZW5ldC5iZQAKCRBJ4+4iGRcl7hYgAQD9OiNouaXvNA10Z0lR22mZDph2 9awa0yxred/ZoRJz4QD/bCR0gHvdgJJJQRM/CYD3aebUWvBo09A0aNrvaizyqw8= =44sK -----END PGP SIGNATURE----- --=-GfGCIeiIbtPTewlJgPFX--
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.Received: (at 55060) by debbugs.gnu.org; 22 Apr 2022 17:51:29 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Fri Apr 22 13:51:29 2022 Received: from localhost ([127.0.0.1]:54636 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nhxRJ-0004Ak-0K for submit <at> debbugs.gnu.org; Fri, 22 Apr 2022 13:51:29 -0400 Received: from andre.telenet-ops.be ([195.130.132.53]:45412) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <maximedevos@HIDDEN>) id 1nhxRH-0004Ac-Q7 for 55060 <at> debbugs.gnu.org; Fri, 22 Apr 2022 13:51:28 -0400 Received: from ptr-bvsjgyhxw7psv60dyze.18120a2.ip6.access.telenet.be ([IPv6:2a02:1811:8c09:9d00:3c5f:2eff:feb0:ba5a]) by andre.telenet-ops.be with bizsmtp id MtrS2700Y4UW6Th01trShr; Fri, 22 Apr 2022 19:51:27 +0200 Message-ID: <7a8fcf2b1e8694f6778ae122b8764760fcf33c5d.camel@HIDDEN> Subject: Re: [bug#55060] [PATCH v2 5/6] gnu: Add python-scooby. From: Maxime Devos <maximedevos@HIDDEN> To: "Paul A. Patience" <paul@HIDDEN>, 55060 <at> debbugs.gnu.org Date: Fri, 22 Apr 2022 19:51:26 +0200 In-Reply-To: <20220422124118.66783-6-paul@HIDDEN> References: <20220422124118.66783-1-paul@HIDDEN> <20220422124118.66783-6-paul@HIDDEN> Content-Type: multipart/signed; micalg="pgp-sha512"; protocol="application/pgp-signature"; boundary="=-NFDeGieGONsfbQkfd4cK" User-Agent: Evolution 3.38.3-1 MIME-Version: 1.0 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=telenet.be; s=r22; t=1650649887; bh=kshx4AR6ZwKt2FexhWIG3ysMmCBiXhhY1FvDlgk4oX8=; h=Subject:From:To:Date:In-Reply-To:References; b=AVaIh/hHOJyKuO3qAIceBt9tEkTOF9gXy8jTO0X7ZUIyiMeDFOrYYBLhz6R+xn5+/ u5vOiRNnmsXMj561RPxs2BRZfXf6HP8jdAEmYieP2KcF8YMrV5iu/Vadhjs11Tq2MF 4DyBhE7tpWSv+0PmIzY6OCRcjbT1+wTD4JVUjkrRi2XhIX+ijCEtUoJ+Y6OoEwDl3V Djq/XTpz9u5GfXFYLmusJ+H2ZBY1q7xbh+07kOmWPKol/qkwjCR92IFE8lrqDO6QQ4 V8FAVWR2uiIscwFqowHXR6oQISaseZH2JYvA6pQeEivS0uZuNPTOpWPM7PMt7uVPHH TvjmIbu/eO5Yg== X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55060 X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) --=-NFDeGieGONsfbQkfd4cK Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Paul A. Patience schreef op vr 22-04-2022 om 12:41 [+0000]: > +=C2=A0=C2=A0=C2=A0 (synopsis "Great Dane turned Python environment detec= tive") What does this package have to do with Denmark and detectives? Looking further, =E2=80=98Great Dane=E2=80=99 appears to be some dog breed,= and I guess it's a pun on the package name and Scooby-Doo. However, I don't think this is useful for users looking for packages that suit their needs. > +=C2=A0=C2=A0=C2=A0 (description > +=C2=A0=C2=A0=C2=A0=C2=A0 "This is a lightweight tool for easily reportin= g your Python > +environment's package versions and hardware resources.") Isn't this just =E2=80=98guix package --list-installed=3D^python=E2=80=99? What hardware resources does it report? CPU models? Disk manufacturers? =C2=A0The attached peripherals? Non-physical peripherals like e.g. bluetooth mice? The amount of ductape holding the computer together? Information about the printer? ... ALso, lightweight and easy is rather subjective. Compares to lscpu, lspci, ..., (which are simple C tools IIUC) depending on python and python-scipy doesn't seem lightweight to me. =E2=80=98(guix)Synopses and Descriptions=E2=80=99 recommends staying factual. Greetings, Maxime. --=-NFDeGieGONsfbQkfd4cK Content-Type: application/pgp-signature; name="signature.asc" Content-Description: This is a digitally signed message part Content-Transfer-Encoding: 7bit -----BEGIN PGP SIGNATURE----- iI0EABYKADUWIQTB8z7iDFKP233XAR9J4+4iGRcl7gUCYmLrHhccbWF4aW1lZGV2 b3NAdGVsZW5ldC5iZQAKCRBJ4+4iGRcl7rbHAQC6VJbsM4/kDPYmYSHX78vmTaJg jt+m9NZbolNSFGjudQD+M8Dgzu0Rj3TOCxjFT7mASZCaqCzTqbmlqxn6l10XJgc= =PQss -----END PGP SIGNATURE----- --=-NFDeGieGONsfbQkfd4cK--
guix-patches@HIDDEN:bug#55060; Package guix-patches.
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guix-patches@HIDDEN:bug#55060; Package guix-patches.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v2 6/6] gnu: Add python-pyvista.
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* gnu/packages/python-science.scm (python-pyvista): New variable.
---
gnu/packages/python-science.scm | 56 +++++++++++++++++++++++++++++++++
1 file changed, 56 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.=
scm
index 07d713e013..c2b7a665f7 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -17,6 +17,7 @@
;;; Copyright =C2=A9 2021 Felix Gruber <felgru@HIDDEN>
;;; Copyright =C2=A9 2022 Malte Frank Gerdes <malte.f.gerdes@HIDDEN>
;;; Copyright =C2=A9 2022 Guillaume Le Vaillant <glv@HIDDEN>
+;;; Copyright =C2=A9 2022 Paul A. Patience <paul@HIDDEN>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -1183,3 +1184,58 @@ (define-public python-numpy-groupies
"This package provides optimized tools for group-indexing operations:
aggregated sum and more.")
(license license:bsd-3)))
+
+(define-public python-pyvista
+ (package
+ (name "python-pyvista")
+ (version "0.34.0")
+ (source
+ ;; The PyPI tarball does not contain the tests.
+ ;; (However, we don't yet actually run the tests.)
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/pyvista/pyvista")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0f2x2wvi5pkpv5h3jrnx8zxnaj51navfqp2fdna1l9rpjgjjf94g"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ (list python-appdirs
+ python-imageio
+ python-matplotlib
+ python-meshio
+ python-numpy
+ python-pillow
+ python-scooby
+ vtk))
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ ;; Disable tests for now because they require several modules
+ ;; currently unpackaged in Guix.
+ (delete 'check)
+ ;; Disable the sanity check, which fails with the following error=
:
+ ;;
+ ;; ...checking requirements: ERROR: pyvista=3D=3D0.34.0 Distrib=
utionNotFound(Requirement.parse('vtk'), {'pyvista'})
+ ;;
+ ;; Probably it cannot find VTK because it isn't a Python library.
+ (delete 'sanity-check))))
+ (home-page "https://docs.pyvista.org/")
+ (synopsis "3D plotting and mesh analysis through VTK")
+ (description
+ "PyVista is...
+
+@itemize
+@item @emph{Pythonic VTK}: a high-level API to the Visualization Toolkit (=
VTK)
+@item mesh data structures and filtering methods for spatial datasets
+@item 3D plotting made simple and built for large/complex data geometries
+@end itemize
+
+PyVista is a helper module for the Visualization Toolkit (VTK) that wraps =
the
+VTK library through NumPy and direct array access through a variety of met=
hods
+and classes. This package provides a Pythonic, well-documented interface
+exposing VTK's powerful visualization backend to facilitate rapid prototyp=
ing,
+analysis, and visual integration of spatially referenced datasets.")
+ (license license:expat)))
--
2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v2 5/6] gnu: Add python-scooby.
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* gnu/packages/python-xyz.scm (python-scooby): New variable.
---
gnu/packages/python-xyz.scm | 48 +++++++++++++++++++++++++++++++++++++
1 file changed, 48 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 9a5d311680..3a49f46555 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -119,6 +119,7 @@
;;; Copyright =C2=A9 2022 Evgeny Pisemsky <evgeny@HIDDEN>
;;; Copyright =C2=A9 2022 drozdov <drozdov@HIDDEN>
;;; Copyright =C2=A9 2022 Peter Polidoro <peter@HIDDEN>
+;;; Copyright =C2=A9 2022 Paul A. Patience <paul@HIDDEN>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -29534,3 +29535,50 @@ (define-public python-sre-yield
uses the parsed regular expression, so you get a much more accurate result
than trying to just split strings.")
(license license:asl2.0)))
+
+(define-public python-scooby
+ (package
+ (name "python-scooby")
+ (version "0.5.12")
+ (source
+ ;; The PyPI tarball does not contain the tests.
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/banesullivan/scooby")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1gkpmz8wl3jg8ylf1na35308sznw2g9wx33zqlyq5i2gpy2ml9mw"))))
+ (build-system python-build-system)
+ (native-inputs
+ (list python-beautifulsoup4
+ python-numpy
+ python-pytest
+ python-pytest-cov
+ python-scipy))
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-tests
+ (lambda _
+ (substitute* "tests/test_scooby.py"
+ ;; The test suite uses the no-version PyPI package
+ ;; (https://pypi.org/project/no-version/),
+ ;; but it doesn't seem worth packaging in Guix just for thi=
s.
+ (("scooby\\.report\\.VERSION_NOT_FOUND")
+ "scooby.report.MODULE_NOT_FOUND")
+ (("^ +import no_version # noqa.*") "")
+ (("with pytest\\.raises\\(OSError\\):")
+ "with pytest.raises(ModuleNotFoundError):"))))
+ (replace 'check
+ (lambda* (#:key tests? inputs outputs #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "pytest")))))))
+ (home-page "https://github.com/banesullivan/scooby")
+ (synopsis "Great Dane turned Python environment detective")
+ (description
+ "This is a lightweight tool for easily reporting your Python
+environment's package versions and hardware resources.")
+ (license license:expat)))
--
2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v2 4/6] gnu: python-meshio: Update to 5.3.4.
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* gnu/packages/simulation.scm (python-meshio): Update to 5.3.4.
[source]: Reindent.
[propagated-inputs]: Add python-rich.
---
gnu/packages/simulation.scm | 27 ++++++++++++++-------------
1 file changed, 14 insertions(+), 13 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 17d0a1352c..803127339c 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -773,19 +773,19 @@ (define-public fullswof-2d
(define-public python-meshio
(package
(name "python-meshio")
- (version "4.4.6")
+ (version "5.3.4")
(source
- (origin
- (method url-fetch)
- (uri (pypi-uri "meshio" version))
- (sha256
- (base32
- "0kv832s2vyff30zz8yqypw5jifwdanvh5x56d2bzkvy94h4jlddy"))
- (snippet
- '(begin
- (let ((file (open-file "setup.py" "a")))
- (display "from setuptools import setup\nsetup()" file)
- (close-port file))))))
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "meshio" version))
+ (sha256
+ (base32
+ "1w39qcg0rw5kb04j7sa45fnqd6k20fsdgrf62cmw2ygjgwnnjh72"))
+ (snippet
+ '(begin
+ (let ((file (open-file "setup.py" "a")))
+ (display "from setuptools import setup\nsetup()" file)
+ (close-port file))))))
(build-system python-build-system)
(inputs
(list python-h5py
@@ -794,7 +794,8 @@ (define-public python-meshio
(list python-pytest))
(propagated-inputs
(list python-importlib-metadata
- python-numpy))
+ python-numpy
+ python-rich))
(arguments
`(#:phases
(modify-phases %standard-phases
--
2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v2 3/6] gnu: python-meshio: Honor #:tests? flag.
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* gnu/packages/simulation.scm (python-meshio)[arguments]: Adjust custom
'check' phase to honor the #:tests? flag.
---
gnu/packages/simulation.scm | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index fa246f9fb7..17d0a1352c 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -799,9 +799,10 @@ (define-public python-meshio
`(#:phases
(modify-phases %standard-phases
(replace 'check
- (lambda* (#:key outputs inputs #:allow-other-keys)
- (add-installed-pythonpath inputs outputs)
- (invoke "python" "-m" "pytest" "-v" "tests"))))))
+ (lambda* (#:key tests? outputs inputs #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "python" "-m" "pytest" "-v" "tests")))))))
(home-page "https://github.com/nschloe/meshio")
(synopsis "I/O for mesh files")
(description "There are various file formats available for
--
2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v2 2/6] gnu: python-meshio: Remove trailing booleans.
Message-ID: <20220422124118.66783-3-paul@HIDDEN>
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* gnu/packages/simulation.scm (python-meshio)[snippet]: Remove trailing
boolean.
[arguments]: Same.
---
gnu/packages/simulation.scm | 6 ++----
1 file changed, 2 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index c8309761d2..fa246f9fb7 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -785,8 +785,7 @@ (define-public python-meshio
'(begin
(let ((file (open-file "setup.py" "a")))
(display "from setuptools import setup\nsetup()" file)
- (close-port file))
- #t))))
+ (close-port file))))))
(build-system python-build-system)
(inputs
(list python-h5py
@@ -802,8 +801,7 @@ (define-public python-meshio
(replace 'check
(lambda* (#:key outputs inputs #:allow-other-keys)
(add-installed-pythonpath inputs outputs)
- (invoke "python" "-m" "pytest" "-v" "tests")
- #t)))))
+ (invoke "python" "-m" "pytest" "-v" "tests"))))))
(home-page "https://github.com/nschloe/meshio")
(synopsis "I/O for mesh files")
(description "There are various file formats available for
--
2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.Received: (at 55060) by debbugs.gnu.org; 22 Apr 2022 12:41:43 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Fri Apr 22 08:41:43 2022 Received: from localhost ([127.0.0.1]:51894 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nhsbX-0004su-Kz for submit <at> debbugs.gnu.org; Fri, 22 Apr 2022 08:41:43 -0400 Received: from mail-4018.proton.ch ([185.70.40.18]:21533) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <paul@HIDDEN>) id 1nhsbV-0004sU-1d for 55060 <at> debbugs.gnu.org; Fri, 22 Apr 2022 08:41:42 -0400 Date: Fri, 22 Apr 2022 12:41:27 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650631294; bh=WUrdUV8p6p82vKKgIYQ+K0R11w058xv8CEBd0YyZZBI=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:Feedback-ID:From:To: Cc:Date:Subject:Reply-To:Feedback-ID:Message-ID; b=abEDS3lp8BRwaCQ4iKUAvt4DRXEloilXBcLtFawNUWvnJWQXVfVC7OaI8shLj/YmA db/lL/WOe2YnwoEz5mTlIkFdDP6kxApPZ5x7OFeyz3jQhic108WwFnVRQ7f8VchDId 6xW8XtFMmo5kZC7USDHjOw5udRJYAJllZMmV80+D2t1LCV+B8xRfNgiVi5QD2K5vT+ PO8J8rpk+UEQEuDmHYaG53GQHrWA0CtMfzJZTyNdIJcihb70IgG5VSYeriie+oUIPz zy4YYKlWpVWZidX/XusR0oy9Lsqbh6Kucv8JEjCypRNvV2cWvqQCxetAa8Fa+A6Vom YTUszTRCpTzkA== To: 55060 <at> debbugs.gnu.org From: "Paul A. Patience" <paul@HIDDEN> Subject: [PATCH v2 0/6] gnu: Add python-pyvista. Message-ID: <20220422124118.66783-1-paul@HIDDEN> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55060 Cc: "Paul A. Patience" <paul@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Reply-To: "Paul A. Patience" <paul@HIDDEN> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) Minor changes. Only the last two patches are different: * python-scooby to add the copyright header. * python-pyvista to add the copyright header and move vtk to propagated-inputs. Paul A. Patience (6): gnu: python-meshio: Remove input labels. gnu: python-meshio: Remove trailing booleans. gnu: python-meshio: Honor #:tests? flag. gnu: python-meshio: Update to 5.3.4. gnu: Add python-scooby. gnu: Add python-pyvista. gnu/packages/python-science.scm | 56 +++++++++++++++++++++++++++++++++ gnu/packages/python-xyz.scm | 48 ++++++++++++++++++++++++++++ gnu/packages/simulation.scm | 44 +++++++++++++------------- 3 files changed, 126 insertions(+), 22 deletions(-) -- 2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH v2 1/6] gnu: python-meshio: Remove input labels.
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* gnu/packages/simulation.scm (python-meshio)[inputs, native-inputs,
propagated-inputs]: Remove labels.
---
gnu/packages/simulation.scm | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 3f2d8e136d..c8309761d2 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -789,13 +789,13 @@ (define-public python-meshio
#t))))
(build-system python-build-system)
(inputs
- `(("h5py" ,python-h5py)
- ("netcdf4" ,python-netcdf4)))
+ (list python-h5py
+ python-netcdf4))
(native-inputs
- `(("pytest" ,python-pytest)))
+ (list python-pytest))
(propagated-inputs
- `(("importlib-metadata" ,python-importlib-metadata)
- ("numpy" ,python-numpy)))
+ (list python-importlib-metadata
+ python-numpy))
(arguments
`(#:phases
(modify-phases %standard-phases
--
2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH 6/6] gnu: Add python-pyvista.
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* gnu/packages/python-science.scm (python-pyvista): New variable.
---
gnu/packages/python-science.scm | 56 +++++++++++++++++++++++++++++++++
1 file changed, 56 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.=
scm
index 07d713e013..d114a1c12f 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -1183,3 +1183,59 @@ (define-public python-numpy-groupies
"This package provides optimized tools for group-indexing operations:
aggregated sum and more.")
(license license:bsd-3)))
+
+(define-public python-pyvista
+ (package
+ (name "python-pyvista")
+ (version "0.34.0")
+ (source
+ ;; The PyPI tarball does not contain the tests.
+ ;; (However, we don't yet actually run the tests.)
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/pyvista/pyvista")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0f2x2wvi5pkpv5h3jrnx8zxnaj51navfqp2fdna1l9rpjgjjf94g"))))
+ (build-system python-build-system)
+ (inputs
+ (list vtk))
+ (propagated-inputs
+ (list python-appdirs
+ python-imageio
+ python-matplotlib
+ python-meshio
+ python-numpy
+ python-pillow
+ python-scooby))
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ ;; Disable tests for now because they require several modules
+ ;; currently unpackaged in Guix.
+ (delete 'check)
+ ;; Disable the sanity check, which fails with the following error=
:
+ ;;
+ ;; ...checking requirements: ERROR: pyvista=3D=3D0.34.0 Distrib=
utionNotFound(Requirement.parse('vtk'), {'pyvista'})
+ ;;
+ ;; Probably it cannot find VTK because it isn't a Python library.
+ (delete 'sanity-check))))
+ (home-page "https://docs.pyvista.org/")
+ (synopsis "3D plotting and mesh analysis through VTK")
+ (description
+ "PyVista is...
+
+@itemize
+@item @emph{Pythonic VTK}: a high-level API to the Visualization Toolkit (=
VTK)
+@item mesh data structures and filtering methods for spatial datasets
+@item 3D plotting made simple and built for large/complex data geometries
+@end itemize
+
+PyVista is a helper module for the Visualization Toolkit (VTK) that wraps =
the
+VTK library through NumPy and direct array access through a variety of met=
hods
+and classes. This package provides a Pythonic, well-documented interface
+exposing VTK's powerful visualization backend to facilitate rapid prototyp=
ing,
+analysis, and visual integration of spatially referenced datasets.")
+ (license (list license:expat))))
--
2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH 5/6] gnu: Add python-scooby.
Message-ID: <20220422010244.23280-5-paul@HIDDEN>
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* gnu/packages/python-xyz.scm (python-scooby): New variable.
---
gnu/packages/python-xyz.scm | 47 +++++++++++++++++++++++++++++++++++++
1 file changed, 47 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 9a5d311680..799a6441ea 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -29534,3 +29534,50 @@ (define-public python-sre-yield
uses the parsed regular expression, so you get a much more accurate result
than trying to just split strings.")
(license license:asl2.0)))
+
+(define-public python-scooby
+ (package
+ (name "python-scooby")
+ (version "0.5.12")
+ (source
+ ;; The PyPI tarball does not contain the tests.
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/banesullivan/scooby")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1gkpmz8wl3jg8ylf1na35308sznw2g9wx33zqlyq5i2gpy2ml9mw"))))
+ (build-system python-build-system)
+ (native-inputs
+ (list python-beautifulsoup4
+ python-numpy
+ python-pytest
+ python-pytest-cov
+ python-scipy))
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'fix-tests
+ (lambda _
+ (substitute* "tests/test_scooby.py"
+ ;; The test suite uses the no-version PyPI package
+ ;; (https://pypi.org/project/no-version/),
+ ;; but it doesn't seem worth packaging in Guix just for thi=
s.
+ (("scooby\\.report\\.VERSION_NOT_FOUND")
+ "scooby.report.MODULE_NOT_FOUND")
+ (("^ +import no_version # noqa.*") "")
+ (("with pytest\\.raises\\(OSError\\):")
+ "with pytest.raises(ModuleNotFoundError):"))))
+ (replace 'check
+ (lambda* (#:key tests? inputs outputs #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "pytest")))))))
+ (home-page "https://github.com/banesullivan/scooby")
+ (synopsis "Great Dane turned Python environment detective")
+ (description
+ "This is a lightweight tool for easily reporting your Python
+environment's package versions and hardware resources.")
+ (license license:expat)))
--
2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH 4/6] gnu: python-meshio: Update to 5.3.4.
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* gnu/packages/simulation.scm (python-meshio): Update to 5.3.4.
[source]: Reindent.
[propagated-inputs]: Add python-rich.
---
gnu/packages/simulation.scm | 27 ++++++++++++++-------------
1 file changed, 14 insertions(+), 13 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 17d0a1352c..803127339c 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -773,19 +773,19 @@ (define-public fullswof-2d
(define-public python-meshio
(package
(name "python-meshio")
- (version "4.4.6")
+ (version "5.3.4")
(source
- (origin
- (method url-fetch)
- (uri (pypi-uri "meshio" version))
- (sha256
- (base32
- "0kv832s2vyff30zz8yqypw5jifwdanvh5x56d2bzkvy94h4jlddy"))
- (snippet
- '(begin
- (let ((file (open-file "setup.py" "a")))
- (display "from setuptools import setup\nsetup()" file)
- (close-port file))))))
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "meshio" version))
+ (sha256
+ (base32
+ "1w39qcg0rw5kb04j7sa45fnqd6k20fsdgrf62cmw2ygjgwnnjh72"))
+ (snippet
+ '(begin
+ (let ((file (open-file "setup.py" "a")))
+ (display "from setuptools import setup\nsetup()" file)
+ (close-port file))))))
(build-system python-build-system)
(inputs
(list python-h5py
@@ -794,7 +794,8 @@ (define-public python-meshio
(list python-pytest))
(propagated-inputs
(list python-importlib-metadata
- python-numpy))
+ python-numpy
+ python-rich))
(arguments
`(#:phases
(modify-phases %standard-phases
--
2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH 3/6] gnu: python-meshio: Honor #:tests? flag.
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* gnu/packages/simulation.scm (python-meshio)[arguments]: Adjust custom
'check' phase to honor the #:tests? flag.
---
gnu/packages/simulation.scm | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index fa246f9fb7..17d0a1352c 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -799,9 +799,10 @@ (define-public python-meshio
`(#:phases
(modify-phases %standard-phases
(replace 'check
- (lambda* (#:key outputs inputs #:allow-other-keys)
- (add-installed-pythonpath inputs outputs)
- (invoke "python" "-m" "pytest" "-v" "tests"))))))
+ (lambda* (#:key tests? outputs inputs #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "python" "-m" "pytest" "-v" "tests")))))))
(home-page "https://github.com/nschloe/meshio")
(synopsis "I/O for mesh files")
(description "There are various file formats available for
--
2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH 2/6] gnu: python-meshio: Remove trailing booleans.
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* gnu/packages/simulation.scm (python-meshio)[snippet]: Remove trailing
boolean.
[arguments]: Same.
---
gnu/packages/simulation.scm | 6 ++----
1 file changed, 2 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index c8309761d2..fa246f9fb7 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -785,8 +785,7 @@ (define-public python-meshio
'(begin
(let ((file (open-file "setup.py" "a")))
(display "from setuptools import setup\nsetup()" file)
- (close-port file))
- #t))))
+ (close-port file))))))
(build-system python-build-system)
(inputs
(list python-h5py
@@ -802,8 +801,7 @@ (define-public python-meshio
(replace 'check
(lambda* (#:key outputs inputs #:allow-other-keys)
(add-installed-pythonpath inputs outputs)
- (invoke "python" "-m" "pytest" "-v" "tests")
- #t)))))
+ (invoke "python" "-m" "pytest" "-v" "tests"))))))
(home-page "https://github.com/nschloe/meshio")
(synopsis "I/O for mesh files")
(description "There are various file formats available for
--
2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.
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To: 55060 <at> debbugs.gnu.org
From: "Paul A. Patience" <paul@HIDDEN>
Subject: [PATCH 1/6] gnu: python-meshio: Remove input labels.
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* gnu/packages/simulation.scm (python-meshio)[inputs, native-inputs,
propagated-inputs]: Remove labels.
---
gnu/packages/simulation.scm | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 3f2d8e136d..c8309761d2 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -789,13 +789,13 @@ (define-public python-meshio
#t))))
(build-system python-build-system)
(inputs
- `(("h5py" ,python-h5py)
- ("netcdf4" ,python-netcdf4)))
+ (list python-h5py
+ python-netcdf4))
(native-inputs
- `(("pytest" ,python-pytest)))
+ (list python-pytest))
(propagated-inputs
- `(("importlib-metadata" ,python-importlib-metadata)
- ("numpy" ,python-numpy)))
+ (list python-importlib-metadata
+ python-numpy))
(arguments
`(#:phases
(modify-phases %standard-phases
--
2.35.1
guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.Received: (at submit) by debbugs.gnu.org; 22 Apr 2022 01:00:41 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Thu Apr 21 21:00:41 2022 Received: from localhost ([127.0.0.1]:51097 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nhhf6-0003tM-Qz for submit <at> debbugs.gnu.org; Thu, 21 Apr 2022 21:00:40 -0400 Received: from lists.gnu.org ([209.51.188.17]:55944) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <paul@HIDDEN>) id 1nhhf5-0003tF-S7 for submit <at> debbugs.gnu.org; Thu, 21 Apr 2022 21:00:40 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:35698) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <paul@HIDDEN>) id 1nhhf5-0003cz-HW for guix-patches@HIDDEN; Thu, 21 Apr 2022 21:00:39 -0400 Received: from mail-4317.proton.ch ([185.70.43.17]:61735) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <paul@HIDDEN>) id 1nhhf1-0008Q8-FP for guix-patches@HIDDEN; Thu, 21 Apr 2022 21:00:39 -0400 Date: Fri, 22 Apr 2022 01:00:24 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1650589230; bh=043elKR9HDLeUen3zu3cleqMsFvPBFGGNn2O77WX7wc=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:Feedback-ID:From:To: Cc:Date:Subject:Reply-To:Feedback-ID:Message-ID; b=NTffvO+OeND4tw/DJTod88F8dvrgv/xoJNf0/RTo/E2DWkuWYUrbwBp0ewTqxgh/c +udsR+ZVT1h/5ePN0yb29Bf3lDTLpvHg5sJe9kRYUvyED2LKrG3TAS6pF19dZ+fjWT RB4N0cvNIq+wEit5V5P2QKpDrNsWifPyz+fZSS827RTom5R5JS+6kDpoYyRQOvuDjw Nmg0Gd9Sh7t2ee8ZrWoar2Pe+sI91UlnUFvpZa2ilr21AIWwA3PQANWxk3awCsNDuy bg240zKsP+HUdngMWwbo7H2XE2HckgLWitDzgXgO1XmXbGOx83GHeMPL3PzMfIYFD9 gTSwUlcgTm3gw== To: guix-patches@HIDDEN From: "Paul A. Patience" <paul@HIDDEN> Subject: [PATCH 0/6] gnu: Add python-pyvista. Message-ID: <20220422010015.23020-1-paul@HIDDEN> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Received-SPF: pass client-ip=185.70.43.17; envelope-from=paul@HIDDEN; helo=mail-4317.proton.ch X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit Cc: "Paul A. Patience" <paul@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Reply-To: "Paul A. Patience" <paul@HIDDEN> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -2.3 (--) This patch series adds the PyVista library to Guix. The latest version of PyVista requires python-meshio 5.2 or later, hence th= e update to that package. Paul A. Patience (6): gnu: python-meshio: Remove input labels. gnu: python-meshio: Remove trailing booleans. gnu: python-meshio: Honor #:tests? flag. gnu: python-meshio: Update to 5.3.4. gnu: Add python-scooby. gnu: Add python-pyvista. gnu/packages/python-science.scm | 56 +++++++++++++++++++++++++++++++++ gnu/packages/python-xyz.scm | 47 +++++++++++++++++++++++++++ gnu/packages/simulation.scm | 44 +++++++++++++------------- 3 files changed, 125 insertions(+), 22 deletions(-) -- 2.35.1
"Paul A. Patience" <paul@HIDDEN>:guix-patches@HIDDEN.
Full text available.guix-patches@HIDDEN:bug#55060; Package guix-patches.
Full text available.
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