GNU bug report logs -
#55121
[PATCH] gnu: Add r-adamgui.
Previous Next
To add a comment to this bug, you must first unarchive it, by sending
a message to control AT debbugs.gnu.org, with unarchive 55121 in the body.
You can then email your comments to 55121 AT debbugs.gnu.org in the normal way.
Toggle the display of automated, internal messages from the tracker.
Report forwarded
to
rekado <at> elephly.net, guix-patches <at> gnu.org
:
bug#55121
; Package
guix-patches
.
(Tue, 26 Apr 2022 10:21:02 GMT)
Full text and
rfc822 format available.
Acknowledgement sent
to
Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
:
New bug report received and forwarded. Copy sent to
rekado <at> elephly.net, guix-patches <at> gnu.org
.
(Tue, 26 Apr 2022 10:21:02 GMT)
Full text and
rfc822 format available.
Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/bioconductor.scm (r-adamgui): New variable.
---
gnu/packages/bioconductor.scm | 47 +++++++++++++++++++++++++++++++++++
1 file changed, 47 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fa862d736f..484fb2e0a6 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1616,6 +1616,53 @@ (define-public r-adam
functionally associated genes} (GFAG).")
(license license:gpl2+)))
+(define-public r-adamgui
+ (package
+ (name "r-adamgui")
+ (version "1.10.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ADAMgui" version))
+ (sha256
+ (base32
+ "0n06bb9djigha0249lxx84pn9q0xiryxbv25qsc3p2h46iaxi3wq"))))
+ (properties `((upstream-name . "ADAMgui")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-adam
+ r-colorramps
+ r-data-table
+ r-dplyr
+ r-dt
+ r-ggplot2
+ r-ggpubr
+ r-ggrepel
+ r-ggsignif
+ r-go-db
+ r-gridextra
+ r-knitr
+ r-rcolorbrewer
+ r-reshape2
+ r-shiny
+ r-shinyjs
+ r-stringi
+ r-stringr
+ r-testthat
+ r-varhandle))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/ADAMgui/")
+ (synopsis
+ "Graphical user interface for gene activity and diversity analysis module")
+ (description
+ "This package @code{ADAMgui} is a @dfn{graphical user interface} (GUI) for
+the @code{ADAM} package. The @code{ADAMgui} package provides 2 shiny-based
+applications that allows the user to study the output of the @code{ADAM}
+package files through different plots. It's possible, for example, to choose a
+specific @dfn{group of functionally associated genes} (GFAG) and observe the
+gene expression behavior with the plots created with the @code{GFAGtargetUi}
+function. Features such as differential expression and fold change can be
+easily seen with aid of the plots made with @code{GFAGpathUi} function.")
+ (license license:gpl2+)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")
base-commit: 30ff557bd7255dddec16f4a032e58f5a88d5e448
--
2.34.0
Reply sent
to
Ricardo Wurmus <rekado <at> elephly.net>
:
You have taken responsibility.
(Tue, 26 Apr 2022 21:50:01 GMT)
Full text and
rfc822 format available.
Notification sent
to
Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
:
bug acknowledged by developer.
(Tue, 26 Apr 2022 21:50:01 GMT)
Full text and
rfc822 format available.
Message #10 received at 55121-done <at> debbugs.gnu.org (full text, mbox):
Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:
> * gnu/packages/bioconductor.scm (r-adamgui): New variable.
Thanks for the patch! Pushed with minor stylistic changes.
--
Ricardo
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
to
internal_control <at> debbugs.gnu.org
.
(Wed, 25 May 2022 11:24:06 GMT)
Full text and
rfc822 format available.
This bug report was last modified 1 year and 337 days ago.
Previous Next
GNU bug tracking system
Copyright (C) 1999 Darren O. Benham,
1997,2003 nCipher Corporation Ltd,
1994-97 Ian Jackson.