GNU bug report logs - #55128
[PATCH] gnu: Add r-affixcan.

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Package: guix-patches;

Reported by: Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>

Date: Tue, 26 Apr 2022 15:26:01 UTC

Severity: normal

Tags: patch

Done: Ricardo Wurmus <rekado <at> elephly.net>

Bug is archived. No further changes may be made.

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Report forwarded to rekado <at> elephly.net, guix-patches <at> gnu.org:
bug#55128; Package guix-patches. (Tue, 26 Apr 2022 15:26:01 GMT) Full text and rfc822 format available.

Acknowledgement sent to Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>:
New bug report received and forwarded. Copy sent to rekado <at> elephly.net, guix-patches <at> gnu.org. (Tue, 26 Apr 2022 15:26:01 GMT) Full text and rfc822 format available.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-affixcan.
Date: Tue, 26 Apr 2022 17:24:55 +0200
* gnu/packages/bioconductor.scm (r-affixcan): New variable.
---
 gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fa862d736f..925ebcdbdc 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1616,6 +1616,31 @@ (define-public r-adam
 functionally associated genes} (GFAG).")
     (license license:gpl2+)))
 
+(define-public r-affixcan
+  (package
+    (name "r-affixcan")
+    (version "1.12.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AffiXcan" version))
+              (sha256
+               (base32
+                "06yn87briv2141jqad934gg5rcd90w5nghrgmbhqnmwafn72gj9d"))))
+    (properties `((upstream-name . "AffiXcan")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-biocparallel r-crayon r-multiassayexperiment
+                             r-summarizedexperiment))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/AffiXcan")
+    (synopsis "Functional approach to impute genetically regulated expression")
+    (description
+     "The @code{AffiXcan} package imputes a @dfn{Genetically regulated
+expression} (GReX) for a set of genes in a sample of individuals, using a method
+based on the @dfn{total binding affinity} (TBA).  Statistical models to impute
+GReX can be trained with a training dataset where the real total expression
+values are known.")
+    (license license:gpl3)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")

base-commit: 30ff557bd7255dddec16f4a032e58f5a88d5e448
-- 
2.34.0





Reply sent to Ricardo Wurmus <rekado <at> elephly.net>:
You have taken responsibility. (Wed, 27 Apr 2022 14:11:03 GMT) Full text and rfc822 format available.

Notification sent to Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>:
bug acknowledged by developer. (Wed, 27 Apr 2022 14:11:03 GMT) Full text and rfc822 format available.

Message #10 received at 55128-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 55128-done <at> debbugs.gnu.org
Subject: Re: [bug#55128] [PATCH] gnu: Add r-affixcan.
Date: Wed, 27 Apr 2022 16:10:20 +0200
Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:

> * gnu/packages/bioconductor.scm (r-affixcan): New variable.

Applied with stylistic changes, thank you!

-- 
Ricardo




bug archived. Request was from Debbugs Internal Request <help-debbugs <at> gnu.org> to internal_control <at> debbugs.gnu.org. (Thu, 26 May 2022 11:24:06 GMT) Full text and rfc822 format available.

This bug report was last modified 1 year and 307 days ago.

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