GNU bug report logs - #55144
[PATCH] gnu: Add r-affyrnadegradation.

Previous Next

To add a comment to this bug, you must first unarchive it, by sending
a message to control AT debbugs.gnu.org, with unarchive 55144 in the body.
You can then email your comments to 55144 AT debbugs.gnu.org in the normal way.

Toggle the display of automated, internal messages from the tracker.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-affyrnadegradation.
Date: Wed, 27 Apr 2022 12:56:14 +0200

* gnu/packages/bioconductor.scm (r-affyrnadegradation): New variable.
---
 gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 67ee6079c6..82aaf547a7 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1664,6 +1664,31 @@ (define-public r-adamgui
 the @code{GFAGpathUi} function.")
     (license license:gpl2+)))
 
+(define-public r-affyrnadegradation
+  (package
+    (name "r-affyrnadegradation")
+    (version "1.40.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AffyRNADegradation" version))
+              (sha256
+               (base32
+                "00hzr62xn1i1w4g8krsxhivzwn8hd7hwhkdxyrpz6cs9vgr4x9kd"))))
+    (properties `((upstream-name . "AffyRNADegradation")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-affy))
+    (home-page "https://bioconductor.org/packages/AffyRNADegradation")
+    (synopsis
+     "Analyze and correct probe positional bias in data due to RNA degradation")
+    (description
+     "The @code{AffyRNADegradation} package helps with the assessment and
+correction of RNA degradation effects in Affymetrix 3' expression arrays.  The
+parameter @code{d} gives a robust and accurate measure of RNA integrity.  The
+correction removes the probe positional bias, and thus improves comparability
+of samples that are affected by RNA degradation.")
+    ;; the R file header specifies GPL2 or later
+    (license license:gpl2+)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")

base-commit: 4fb6ef6636acd7608889639c1b2e492517256f76
-- 
2.34.0

Message #10 received at 55144-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 55144-done <at> debbugs.gnu.org
Subject: Re: [bug#55144] [PATCH] gnu: Add r-affyrnadegradation.
Date: Wed, 27 Apr 2022 16:21:02 +0200

Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:

> * gnu/packages/bioconductor.scm (r-affyrnadegradation): New variable.

Applied, thanks!

-- 
Ricardo

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.