GNU bug report logs -
#55218
[PATCH] gnu: Add r-agimicrorna.
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Report forwarded
to
rekado <at> elephly.net, guix-patches <at> gnu.org
:
bug#55218
; Package
guix-patches
.
(Mon, 02 May 2022 09:39:01 GMT)
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Acknowledgement sent
to
Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
:
New bug report received and forwarded. Copy sent to
rekado <at> elephly.net, guix-patches <at> gnu.org
.
(Mon, 02 May 2022 09:39:01 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/bioconductor.scm (r-agimicrorna): New variable.
---
gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a78903becc..78075de4e0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1877,6 +1877,36 @@ (define-public r-agilp
;; GPLv3.
(license license:gpl3)))
+(define-public r-agimicrorna
+ (package
+ (name "r-agimicrorna")
+ (version "2.46.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AgiMicroRna" version))
+ (sha256
+ (base32
+ "0jic89gyphbv7jzlfgm9bh1aq48lp86rq6hr34gsg9z0pa1192xa"))))
+ (properties `((upstream-name . "AgiMicroRna")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-affy
+ r-affycoretools
+ r-biobase
+ r-limma
+ r-preprocesscore))
+ (home-page "https://git.bioconductor.org/packages/AgiMicroRna")
+ (synopsis
+ "Processing and differential expression analysis of Agilent microRNA chips")
+ (description
+ "@code{AgiMicroRna} provides useful functionality for the processing, quality
+assessment and differential expression analysis of Agilent microRNA array data.
+The package uses a limma-like structure to generate the processed data in order
+to make statistical inferences about differential expression using the linear
+model features implemented in limma. Standard Bioconductor objects are used so
+that other packages could be used as well.")
+ (license license:gpl3)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")
base-commit: 098f2eea331121905e3c867f478b22cea3510841
--
2.36.0
Reply sent
to
Ricardo Wurmus <rekado <at> elephly.net>
:
You have taken responsibility.
(Mon, 02 May 2022 14:55:03 GMT)
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Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
:
bug acknowledged by developer.
(Mon, 02 May 2022 14:55:03 GMT)
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Message #10 received at 55218-done <at> debbugs.gnu.org (full text, mbox):
Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:
> * gnu/packages/bioconductor.scm (r-agimicrorna): New variable.
Applied, thanks.
--
Ricardo
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
to
internal_control <at> debbugs.gnu.org
.
(Tue, 31 May 2022 11:24:05 GMT)
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This bug report was last modified 1 year and 331 days ago.
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