GNU bug report logs -
#55219
[PATCH] gnu: Add r-aims.
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Report forwarded
to
rekado <at> elephly.net, guix-patches <at> gnu.org
:
bug#55219
; Package
guix-patches
.
(Mon, 02 May 2022 09:51:02 GMT)
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Acknowledgement sent
to
Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
:
New bug report received and forwarded. Copy sent to
rekado <at> elephly.net, guix-patches <at> gnu.org
.
(Mon, 02 May 2022 09:51:02 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/bioconductor.scm (r-aims): New variable.
---
gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a78903becc..17fa746fae 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1877,6 +1877,29 @@ (define-public r-agilp
;; GPLv3.
(license license:gpl3)))
+(define-public r-aims
+ (package
+ (name "r-aims")
+ (version "1.28.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AIMS" version))
+ (sha256
+ (base32
+ "1z7yzaizyzcv556w8880603nd947k0d6raadjm42mdl66mma0cdx"))))
+ (properties `((upstream-name . "AIMS")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biobase r-e1071))
+ (home-page "https://git.bioconductor.org/packages/AIMS")
+ (synopsis
+ "Absolute assignment of breast cancer intrinsic molecular subtype")
+ (description
+ "This package contains the @code{AIMS} implementation. It contains
+necessary functions to assign the five intrinsic molecular subtypes (Luminal A,
+Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done
+on individual samples as well as on dataset of gene expression data.")
+ (license license:artistic2.0)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")
base-commit: 098f2eea331121905e3c867f478b22cea3510841
--
2.36.0
Reply sent
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Ricardo Wurmus <rekado <at> elephly.net>
:
You have taken responsibility.
(Thu, 24 Nov 2022 14:37:02 GMT)
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Notification sent
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Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
:
bug acknowledged by developer.
(Thu, 24 Nov 2022 14:37:02 GMT)
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Message #10 received at 55219-done <at> debbugs.gnu.org (full text, mbox):
Applied and updated, thanks!
--
Ricardo
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
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internal_control <at> debbugs.gnu.org
.
(Fri, 23 Dec 2022 12:24:07 GMT)
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This bug report was last modified 1 year and 124 days ago.
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