GNU bug report logs - #55241
[PATCH 3/4] gnu: Add r-smurf.

Please note: This is a static page, with minimal formatting, updated once a day.
Click here to see this page with the latest information and nicer formatting.

Package: guix-patches; Reported by: Mădălin Ionel Patrașcu <madalinionel.patrascu@HIDDEN>; Keywords: patch; merged with #55237, #55238, #55239, #55240; dated Tue, 3 May 2022 06:54:03 UTC; Maintainer for guix-patches is guix-patches@HIDDEN.
Merged 55237 55238 55239 55240 55241. Request was from "MadalinIonel.Patrascu@HIDDEN" <MadalinIonel.Patrascu@HIDDEN> to control <at> debbugs.gnu.org. Full text available.

Message received at submit <at> debbugs.gnu.org:


Received: (at submit) by debbugs.gnu.org; 3 May 2022 06:53:34 +0000
From debbugs-submit-bounces <at> debbugs.gnu.org Tue May 03 02:53:34 2022
Received: from localhost ([127.0.0.1]:38540 helo=debbugs.gnu.org)
	by debbugs.gnu.org with esmtp (Exim 4.84_2)
	(envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>)
	id 1nlmPe-00060P-Hi
	for submit <at> debbugs.gnu.org; Tue, 03 May 2022 02:53:34 -0400
Received: from lists.gnu.org ([209.51.188.17]:45510)
 by debbugs.gnu.org with esmtp (Exim 4.84_2)
 (envelope-from <MadalinIonel.Patrascu@HIDDEN>)
 id 1nlmPc-000609-AZ
 for submit <at> debbugs.gnu.org; Tue, 03 May 2022 02:53:32 -0400
Received: from eggs.gnu.org ([2001:470:142:3::10]:47872)
 by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256)
 (Exim 4.90_1) (envelope-from <MadalinIonel.Patrascu@HIDDEN>)
 id 1nlmPa-0008NQ-Np
 for guix-patches@HIDDEN; Tue, 03 May 2022 02:53:32 -0400
Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:59811)
 by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256)
 (Exim 4.90_1) (envelope-from <MadalinIonel.Patrascu@HIDDEN>)
 id 1nlmPY-0006ez-HN
 for guix-patches@HIDDEN; Tue, 03 May 2022 02:53:30 -0400
Received: from localhost (localhost [127.0.0.1])
 by c2062.mx.srv.dfn.de (Postfix) with ESMTP id 4DE96300169
 for <guix-patches@HIDDEN>; Tue,  3 May 2022 08:53:26 +0200 (CEST)
DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h=
 content-type:content-type:content-transfer-encoding:mime-version
 :references:in-reply-to:x-mailer:message-id:date:date:subject
 :subject:from:from:received:received:received; s=mdc; t=
 1651560805; x=1653375206; bh=VZTTdtHBfv0Ql7B1Qo7yQwnQz44Z+Xf3Iwi
 TtD/nHpw=; b=m0JVnQsZdYURwnKbRYMeJzWQEg7xzh2H504tJS+sk9SPJbhxTW6
 CXmaoqSEQZKm8otWUjPlU+xweR9e71vOx1tUdOwbNYaHVvYXmr3IxzbNT/ox4EH6
 PCnX4lyldOKfhTRnjI1rJyGbBc0LQZDKbvSGm+aPSW6A0wdM53bWDQe0=
Received: from c2062.mx.srv.dfn.de ([127.0.0.1])
 by localhost (mgw4-erl.srv.dfn.de [127.0.0.1]) (amavisd-new, port 20134)
 with ESMTP id 59M3TlH3pnfu for <guix-patches@HIDDEN>;
 Tue,  3 May 2022 08:53:25 +0200 (CEST)
Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62])
 by c2062.mx.srv.dfn.de (Postfix) with ESMTPS
 for <guix-patches@HIDDEN>; Tue,  3 May 2022 08:53:25 +0200 (CEST)
Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net
 (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2,
 cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.6; Tue, 3 May 2022
 08:53:24 +0200
From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?=
 <madalinionel.patrascu@HIDDEN>
To: <guix-patches@HIDDEN>
Subject: [PATCH 3/4] gnu: Add r-smurf.
Date: Tue, 3 May 2022 08:53:10 +0200
Message-ID: <20220503065311.9192-3-madalinionel.patrascu@HIDDEN>
X-Mailer: git-send-email 2.36.0
In-Reply-To: <20220503065311.9192-1-madalinionel.patrascu@HIDDEN>
References: <20220503065311.9192-1-madalinionel.patrascu@HIDDEN>
MIME-Version: 1.0
Content-Transfer-Encoding: 8bit
Content-Type: text/plain
X-Originating-IP: [141.80.113.106]
X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To
 SW-IT-P-EX4.mdc-berlin.net (141.80.113.62)
X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-26870.006
X-TM-AS-Result: No-10--1.022900-5.000000
X-TMASE-MatchedRID: 4r2MyAYFTnf/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo
 TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6v8fLAX0P50AxLxDYO3UlDEYx760ONDcWm3P
 fEX0yKHHxSJI9FrYN42HdNGuvvf8oo8WMkQWv6iXBcIE78YqRWvcUt5lc1lLgKIzdZS3ou0VSLl
 cWeO1N48PZmEi469a07dtNXnLsoV8LraCVwvI0FVCozHgFSMQb4pYQ5SJBQvPGCY87cq/qbhq3l
 oeMiDRPbecpFU+TWJ1ZKCalsVmcQjWQPYq1JOarY9u3lK2/Yrn87HRNT0KLkg==
X-TM-AS-User-Approved-Sender: Yes
X-TM-AS-User-Blocked-Sender: No
X-TMASE-Result: 10--1.022900-5.000000
X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-26870.006
X-TM-SNTS-SMTP: 753294651DC09A4F4351B7A2EA22EFC3C3F1B72D9C4F4F9884469C878CC7E9202002:F
Received-SPF: pass client-ip=194.95.238.172;
 envelope-from=MadalinIonel.Patrascu@HIDDEN; helo=c2062.mx.srv.dfn.de
X-Spam_score_int: -43
X-Spam_score: -4.4
X-Spam_bar: ----
X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1,
 DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1,
 RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001,
 T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no
X-Spam_action: no action
X-Spam-Score: -1.4 (-)
X-Debbugs-Envelope-To: submit
X-BeenThere: debbugs-submit <at> debbugs.gnu.org
X-Mailman-Version: 2.1.18
Precedence: list
List-Id: <debbugs-submit.debbugs.gnu.org>
List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe>
List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/>
List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org>
List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help>
List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, 
 <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe>
Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org
Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org>
X-Spam-Score: -2.4 (--)

* gnu/packages/cran.scm (r-smurf): New variable.
---
 gnu/packages/cran.scm | 42 ++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 42 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 63e2b71cd3..099bfb8002 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5907,6 +5907,48 @@ (define-public r-sm
 and density estimation")
     (license license:gpl2+)))
 
+(define-public r-smurf
+  (package
+    (name "r-smurf")
+    (version "1.1.2")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "smurf" version))
+              (sha256
+               (base32
+                "00q54pg42anilhcshhjvv277mkszbpzpkf1g7srs7cjd5skjvsaf"))))
+    (properties `((upstream-name . "smurf")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-catdata
+           r-glmnet
+           r-mass
+           r-matrix
+           r-mgcv
+           r-rcolorbrewer
+           r-rcpp
+           r-rcpparmadillo
+           r-speedglm))
+    (native-inputs (list r-knitr))
+    (home-page "https://gitlab.com/TReynkens/smurf")
+    (synopsis "Sparse multi-type regularized feature modeling")
+    (description
+     "The @code{smurf} package contains the implementation of the @dfn{Sparse
+Multi-type Regularized Feature} (SMuRF) modeling algorithm to fit
+@dfn{generalized linear models} (GLMs) with multiple types of predictors via
+regularized maximum likelihood.  Next to the fitting procedure, following
+functionality is available:
+
+@itemize @bullet
+@item
+Selection of the regularization tuning parameter lambda using three different
+approaches: in-sample, out-of-sample or using cross-validation.
+@item
+S3 methods to handle the fitted object including visualization of the coefficients
+and a model summary.
+@end itemize")
+    (license license:gpl2+)))
+
 (define-public r-venndiagram
   (package
     (name "r-venndiagram")
-- 
2.36.0





Acknowledgement sent to Mădălin Ionel Patrașcu <madalinionel.patrascu@HIDDEN>:
New bug report received and forwarded. Copy sent to guix-patches@HIDDEN. Full text available.
Report forwarded to guix-patches@HIDDEN:
bug#55241; Package guix-patches. Full text available.
Please note: This is a static page, with minimal formatting, updated once a day.
Click here to see this page with the latest information and nicer formatting.
Last modified: Tue, 3 May 2022 07:45:01 UTC

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997 nCipher Corporation Ltd, 1994-97 Ian Jackson.