GNU bug report logs -
#55298
[PATCH 0/1] Do not propagate cwltool inputs.
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Reported by: Arun Isaac <arunisaac <at> systemreboot.net>
Date: Sat, 7 May 2022 09:35:01 UTC
Severity: normal
Tags: patch
Done: Arun Isaac <arunisaac <at> systemreboot.net>
Bug is archived. No further changes may be made.
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Report forwarded
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:
bug#55298
; Package
guix-patches
.
(Sat, 07 May 2022 09:35:01 GMT)
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Arun Isaac <arunisaac <at> systemreboot.net>
:
New bug report received and forwarded. Copy sent to
guix-patches <at> gnu.org
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(Sat, 07 May 2022 09:35:01 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
cwltool is a command-line tool, not a python library. So, its dependencies
should be regular inputs, not propagated inputs. In fact, as it stands
currently, installing cwltool fails due to a package conflict.
--8<---------------cut here---------------start------------->8---
$ guix install cwltool
The following package would be installed:
cwltool 3.1.20220119140128
guix install: error: profile contains conflicting entries for python-rdflib
guix install: error: first entry: python-rdflib <at> 5.0.0 /gnu/store/lxy384l7avd0q4dmfs0zywllb9221y7x-python-rdflib-5.0.0
guix install: error: ... propagated from python-prov <at> 2.0.0
guix install: error: ... propagated from cwltool <at> 3.1.20220119140128
guix install: error: second entry: python-rdflib <at> 6.1.1 /gnu/store/2f88f2w44zsvmx8m6ymp1fywiw1h379x-python-rdflib-6.1.1
guix install: error: ... propagated from python-rdflib-jsonld <at> 0.6.2
guix install: error: ... propagated from python-schema-salad <at> 8.2.20211116214159
guix install: error: ... propagated from cwltool <at> 3.1.20220119140128
hint: You cannot have two different versions or variants of `cwltool' in the same profile.
--8<---------------cut here---------------end--------------->8---
Arun Isaac (1):
gnu: cwltool: Do not propagate inputs.
gnu/packages/bioinformatics.scm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
--
2.36.0
Information forwarded
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guix-patches <at> gnu.org
:
bug#55298
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(Tue, 10 May 2022 22:49:02 GMT)
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Message #8 received at 55298 <at> debbugs.gnu.org (full text, mbox):
Hi,
Arun Isaac <arunisaac <at> systemreboot.net> skribis:
> cwltool is a command-line tool, not a python library. So, its dependencies
> should be regular inputs, not propagated inputs. In fact, as it stands
> currently, installing cwltool fails due to a package conflict.
>
> $ guix install cwltool
> The following package would be installed:
> cwltool 3.1.20220119140128
>
> guix install: error: profile contains conflicting entries for python-rdflib
> guix install: error: first entry: python-rdflib <at> 5.0.0 /gnu/store/lxy384l7avd0q4dmfs0zywllb9221y7x-python-rdflib-5.0.0
> guix install: error: ... propagated from python-prov <at> 2.0.0
> guix install: error: ... propagated from cwltool <at> 3.1.20220119140128
> guix install: error: second entry: python-rdflib <at> 6.1.1 /gnu/store/2f88f2w44zsvmx8m6ymp1fywiw1h379x-python-rdflib-6.1.1
> guix install: error: ... propagated from python-rdflib-jsonld <at> 0.6.2
> guix install: error: ... propagated from python-schema-salad <at> 8.2.20211116214159
> guix install: error: ... propagated from cwltool <at> 3.1.20220119140128
> hint: You cannot have two different versions or variants of `cwltool' in the same profile.
>
> Arun Isaac (1):
> gnu: cwltool: Do not propagate inputs.
>
> gnu/packages/bioinformatics.scm | 2 +-
> 1 file changed, 1 insertion(+), 1 deletion(-)
You forgot to send the actual patch, but I think removing propagated
inputs in this case is a good idea. Got for it!
Thanks,
Ludo’.
Reply sent
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Arun Isaac <arunisaac <at> systemreboot.net>
:
You have taken responsibility.
(Wed, 11 May 2022 05:31:01 GMT)
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Notification sent
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Arun Isaac <arunisaac <at> systemreboot.net>
:
bug acknowledged by developer.
(Wed, 11 May 2022 05:31:01 GMT)
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Message #13 received at 55298-done <at> debbugs.gnu.org (full text, mbox):
> You forgot to send the actual patch,
Oops, sorry!
> but I think removing propagated inputs in this case is a good idea.
> Got for it!
Done, thank you!
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
to
internal_control <at> debbugs.gnu.org
.
(Wed, 08 Jun 2022 11:24:07 GMT)
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This bug report was last modified 1 year and 293 days ago.
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