GNU bug report logs - #55298
[PATCH 0/1] Do not propagate cwltool inputs.

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Package: guix-patches;

Reported by: Arun Isaac <arunisaac <at> systemreboot.net>

Date: Sat, 7 May 2022 09:35:01 UTC

Severity: normal

Tags: patch

Done: Arun Isaac <arunisaac <at> systemreboot.net>

Bug is archived. No further changes may be made.

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Report forwarded to guix-patches <at> gnu.org:
bug#55298; Package guix-patches. (Sat, 07 May 2022 09:35:01 GMT) Full text and rfc822 format available.

Acknowledgement sent to Arun Isaac <arunisaac <at> systemreboot.net>:
New bug report received and forwarded. Copy sent to guix-patches <at> gnu.org. (Sat, 07 May 2022 09:35:01 GMT) Full text and rfc822 format available.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Arun Isaac <arunisaac <at> systemreboot.net>
To: guix-patches <at> gnu.org
Cc: Arun Isaac <arunisaac <at> systemreboot.net>
Subject: [PATCH 0/1] Do not propagate cwltool inputs.
Date: Sat,  7 May 2022 15:04:43 +0530
cwltool is a command-line tool, not a python library. So, its dependencies
should be regular inputs, not propagated inputs. In fact, as it stands
currently, installing cwltool fails due to a package conflict.

--8<---------------cut here---------------start------------->8---
$ guix install cwltool
The following package would be installed:
   cwltool 3.1.20220119140128

guix install: error: profile contains conflicting entries for python-rdflib
guix install: error:   first entry: python-rdflib <at> 5.0.0 /gnu/store/lxy384l7avd0q4dmfs0zywllb9221y7x-python-rdflib-5.0.0
guix install: error:    ... propagated from python-prov <at> 2.0.0
guix install: error:    ... propagated from cwltool <at> 3.1.20220119140128
guix install: error:   second entry: python-rdflib <at> 6.1.1 /gnu/store/2f88f2w44zsvmx8m6ymp1fywiw1h379x-python-rdflib-6.1.1
guix install: error:    ... propagated from python-rdflib-jsonld <at> 0.6.2
guix install: error:    ... propagated from python-schema-salad <at> 8.2.20211116214159
guix install: error:    ... propagated from cwltool <at> 3.1.20220119140128
hint: You cannot have two different versions or variants of `cwltool' in the same profile.
--8<---------------cut here---------------end--------------->8---

Arun Isaac (1):
  gnu: cwltool: Do not propagate inputs.

 gnu/packages/bioinformatics.scm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

-- 
2.36.0





Information forwarded to guix-patches <at> gnu.org:
bug#55298; Package guix-patches. (Tue, 10 May 2022 22:49:02 GMT) Full text and rfc822 format available.

Message #8 received at 55298 <at> debbugs.gnu.org (full text, mbox):

From: Ludovic Courtès <ludo <at> gnu.org>
To: Arun Isaac <arunisaac <at> systemreboot.net>
Cc: 55298 <at> debbugs.gnu.org
Subject: Re: bug#55298: [PATCH 0/1] Do not propagate cwltool inputs.
Date: Wed, 11 May 2022 00:48:45 +0200
Hi,

Arun Isaac <arunisaac <at> systemreboot.net> skribis:

> cwltool is a command-line tool, not a python library. So, its dependencies
> should be regular inputs, not propagated inputs. In fact, as it stands
> currently, installing cwltool fails due to a package conflict.
>
> $ guix install cwltool
> The following package would be installed:
>    cwltool 3.1.20220119140128
>
> guix install: error: profile contains conflicting entries for python-rdflib
> guix install: error:   first entry: python-rdflib <at> 5.0.0 /gnu/store/lxy384l7avd0q4dmfs0zywllb9221y7x-python-rdflib-5.0.0
> guix install: error:    ... propagated from python-prov <at> 2.0.0
> guix install: error:    ... propagated from cwltool <at> 3.1.20220119140128
> guix install: error:   second entry: python-rdflib <at> 6.1.1 /gnu/store/2f88f2w44zsvmx8m6ymp1fywiw1h379x-python-rdflib-6.1.1
> guix install: error:    ... propagated from python-rdflib-jsonld <at> 0.6.2
> guix install: error:    ... propagated from python-schema-salad <at> 8.2.20211116214159
> guix install: error:    ... propagated from cwltool <at> 3.1.20220119140128
> hint: You cannot have two different versions or variants of `cwltool' in the same profile.
>
> Arun Isaac (1):
>   gnu: cwltool: Do not propagate inputs.
>
>  gnu/packages/bioinformatics.scm | 2 +-
>  1 file changed, 1 insertion(+), 1 deletion(-)

You forgot to send the actual patch, but I think removing propagated
inputs in this case is a good idea.  Got for it!

Thanks,
Ludo’.




Reply sent to Arun Isaac <arunisaac <at> systemreboot.net>:
You have taken responsibility. (Wed, 11 May 2022 05:31:01 GMT) Full text and rfc822 format available.

Notification sent to Arun Isaac <arunisaac <at> systemreboot.net>:
bug acknowledged by developer. (Wed, 11 May 2022 05:31:01 GMT) Full text and rfc822 format available.

Message #13 received at 55298-done <at> debbugs.gnu.org (full text, mbox):

From: Arun Isaac <arunisaac <at> systemreboot.net>
To: Ludovic Courtès <ludo <at> gnu.org>
Cc: 55298-done <at> debbugs.gnu.org
Subject: Re: bug#55298: [PATCH 0/1] Do not propagate cwltool inputs.
Date: Wed, 11 May 2022 11:00:29 +0530
> You forgot to send the actual patch,

Oops, sorry!

> but I think removing propagated inputs in this case is a good idea.
> Got for it!

Done, thank you!




bug archived. Request was from Debbugs Internal Request <help-debbugs <at> gnu.org> to internal_control <at> debbugs.gnu.org. (Wed, 08 Jun 2022 11:24:07 GMT) Full text and rfc822 format available.

This bug report was last modified 1 year and 293 days ago.

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