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User-agent: mu4e 1.8.13; emacs 28.2
From: Remco van 't Veer <remco@HIDDEN>
To: Maxim Cournoyer <maxim.cournoyer@HIDDEN>
Subject: Re: bug#55358: docker containers stopped when doing guix install or
guix shell
In-reply-to: <87h73m9z3f.fsf@HIDDEN>
Date: Thu, 09 Feb 2023 13:26:43 +0100
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I think I know what is causing the issue. Both the "standard" mysql and
postgres containers use user-id 999 to run the database service (this
seems like a common practice because the redis container is configured
similarly). That user-id is also configured as guixbuilder01 so I guess
the guix daemon is killing those when processes when it finishes doing
builds.
Does that make sense? If so can guix daemon be fixed to be a tad more
gentile to the processes not spawned on its behalf?
2022/07/12 16:37, Remco van 't Veer:
> 2022/07/12 09:48, Maxim Cournoyer:
>
>> Hi,
>>
>> Remco van 't Veer <remco@HIDDEN> writes:
>>
>>> On a Guix system host, some running docker containers are stopped when
>>> doing guix install or other guix operations like shell. I noticed this
>>> happing to mysql and postgres containers but an elasticsearch container
>>> just keeps running.
>>>
>>> Here's an example session:
>>>
>>> $ docker ps
>>> CONTAINER ID IMAGE COMMAND CREATED =
STATUS PORTS NAMES
>>> $ docker run -d postgres:10.10
>>> ..
>>> 2b52ee072b1f5584cae597afb033cdcc0e560bbe9145b17b41502c204034e60b
>>> $ docker ps
>>> CONTAINER ID IMAGE COMMAND CREATED =
STATUS PORTS NAMES
>>> 2b52ee072b1f postgres:10.10 "docker-entrypoint.s=E2=80=A6" 2 secon=
ds ago Up 1 seconds 5432/tcp blah_blah
>>> $ guix shell xeyes -- xeyes
>>> substitute: updating substitutes from 'https://ci.guix.gnu.org'... 10=
0.0%
>>> 0.0 MB will be downloaded
>>> xeyes-1.1.2 11KiB =
613KiB/s 00:00 [##################] 100.0%
>>> The following derivation will be built:
>>> /gnu/store/xc002hxl4g8mskqmpm0grsk8s45m91gz-profile.drv
>>>
>>> applying 4 grafts for xeyes-1.1.2 ...
>>> building CA certificate bundle...
>>> listing Emacs sub-directories...
>>> building fonts directory...
>>> building directory of Info manuals...
>>> building profile with 1 package...
>>> $ docker ps
>>> CONTAINER ID IMAGE COMMAND CREATED =
STATUS PORTS NAMES
>>> $ exit
>>>
>>> First we see no docker containers are running, then we start postgres-10
>>> from docker hub, we see its container is running, then we do something
>>> using guix-shell on an application *not already available on this
>>> system*, and now the container died. This does not work the second time
>>> when the "derivation" is already "built".
>>
>> Are you still able to reproduce this using the new version of docker
>> packaged in Guix?
>
> Yes, same problem after a guix pull and guix system reconfigure just now.
>
> $ guix describe
> Generation 72 Jul 12 2022 16:11:38 (current)
> guix 9173cb5
> repository URL: https://git.savannah.gnu.org/git/guix.git
> branch: master
> commit: 9173cb522ddc4f31f21948cee3fb214fd67ef616
>
> Cheers,
> Remco
bug-guix@HIDDEN:bug#55358; Package guix.
Full text available.
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From: Remco van 't Veer <remco@HIDDEN>
To: Maxim Cournoyer <maxim.cournoyer@HIDDEN>
Subject: Re: bug#55358: docker containers stopped when doing guix install or
guix shell
In-reply-to: <87mtde8mrr.fsf@HIDDEN>
Date: Tue, 12 Jul 2022 16:37:08 +0200
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2022/07/12 09:48, Maxim Cournoyer:
> Hi,
>
> Remco van 't Veer <remco@HIDDEN> writes:
>
>> On a Guix system host, some running docker containers are stopped when
>> doing guix install or other guix operations like shell. I noticed this
>> happing to mysql and postgres containers but an elasticsearch container
>> just keeps running.
>>
>> Here's an example session:
>>
>> $ docker ps
>> CONTAINER ID IMAGE COMMAND CREATED =
STATUS PORTS NAMES
>> $ docker run -d postgres:10.10
>> ..
>> 2b52ee072b1f5584cae597afb033cdcc0e560bbe9145b17b41502c204034e60b
>> $ docker ps
>> CONTAINER ID IMAGE COMMAND CREATED =
STATUS PORTS NAMES
>> 2b52ee072b1f postgres:10.10 "docker-entrypoint.s=E2=80=A6" 2 second=
s ago Up 1 seconds 5432/tcp blah_blah
>> $ guix shell xeyes -- xeyes
>> substitute: updating substitutes from 'https://ci.guix.gnu.org'... 100=
.0%
>> 0.0 MB will be downloaded
>> xeyes-1.1.2 11KiB =
613KiB/s 00:00 [##################] 100.0%
>> The following derivation will be built:
>> /gnu/store/xc002hxl4g8mskqmpm0grsk8s45m91gz-profile.drv
>>
>> applying 4 grafts for xeyes-1.1.2 ...
>> building CA certificate bundle...
>> listing Emacs sub-directories...
>> building fonts directory...
>> building directory of Info manuals...
>> building profile with 1 package...
>> $ docker ps
>> CONTAINER ID IMAGE COMMAND CREATED =
STATUS PORTS NAMES
>> $ exit
>>
>> First we see no docker containers are running, then we start postgres-10
>> from docker hub, we see its container is running, then we do something
>> using guix-shell on an application *not already available on this
>> system*, and now the container died. This does not work the second time
>> when the "derivation" is already "built".
>
> Are you still able to reproduce this using the new version of docker
> packaged in Guix?
Yes, same problem after a guix pull and guix system reconfigure just now.
$ guix describe
Generation 72 Jul 12 2022 16:11:38 (current)
guix 9173cb5
repository URL: https://git.savannah.gnu.org/git/guix.git
branch: master
commit: 9173cb522ddc4f31f21948cee3fb214fd67ef616
Cheers,
Remco
bug-guix@HIDDEN:bug#55358; Package guix.
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From: Maxim Cournoyer <maxim.cournoyer@HIDDEN>
To: Remco van 't Veer <remco@HIDDEN>
Subject: Re: bug#55358: docker containers stopped when doing guix install or
guix shell
References: <87ilqch79l.fsf@HIDDEN>
Date: Tue, 12 Jul 2022 09:48:40 -0400
In-Reply-To: <87ilqch79l.fsf@HIDDEN> (Remco van t. Veer's message of
"Wed, 11 May 2022 09:12:54 +0200")
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Hi,
Remco van 't Veer <remco@HIDDEN> writes:
> On a Guix system host, some running docker containers are stopped when
> doing guix install or other guix operations like shell. I noticed this
> happing to mysql and postgres containers but an elasticsearch container
> just keeps running.
>
> Here's an example session:
>
> $ docker ps
> CONTAINER ID IMAGE COMMAND CREATED =
STATUS PORTS NAMES
> $ docker run -d postgres:10.10
> ..
> 2b52ee072b1f5584cae597afb033cdcc0e560bbe9145b17b41502c204034e60b
> $ docker ps
> CONTAINER ID IMAGE COMMAND CREATED =
STATUS PORTS NAMES
> 2b52ee072b1f postgres:10.10 "docker-entrypoint.s=E2=80=A6" 2 seconds=
ago Up 1 seconds 5432/tcp blah_blah
> $ guix shell xeyes -- xeyes
> substitute: updating substitutes from 'https://ci.guix.gnu.org'... 100.=
0%
> 0.0 MB will be downloaded
> xeyes-1.1.2 11KiB =
613KiB/s 00:00 [##################] 100.0%
> The following derivation will be built:
> /gnu/store/xc002hxl4g8mskqmpm0grsk8s45m91gz-profile.drv
>
> applying 4 grafts for xeyes-1.1.2 ...
> building CA certificate bundle...
> listing Emacs sub-directories...
> building fonts directory...
> building directory of Info manuals...
> building profile with 1 package...
> $ docker ps
> CONTAINER ID IMAGE COMMAND CREATED =
STATUS PORTS NAMES
> $ exit
>
> First we see no docker containers are running, then we start postgres-10
> from docker hub, we see its container is running, then we do something
> using guix-shell on an application *not already available on this
> system*, and now the container died. This does not work the second time
> when the "derivation" is already "built".
Are you still able to reproduce this using the new version of docker
packaged in Guix?
Thanks,
Maxim
bug-guix@HIDDEN:bug#55358; Package guix.
Full text available.
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From: Remco van 't Veer <remco@HIDDEN>
To: bug-guix@HIDDEN
Subject: docker containers stopped when doing guix install or guix shell
Date: Wed, 11 May 2022 09:12:54 +0200
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On a Guix system host, some running docker containers are stopped when
doing guix install or other guix operations like shell. I noticed this
happing to mysql and postgres containers but an elasticsearch container
just keeps running.
Here's an example session:
$ docker ps
CONTAINER ID IMAGE COMMAND CREATED ST=
ATUS PORTS NAMES
$ docker run -d postgres:10.10
..
2b52ee072b1f5584cae597afb033cdcc0e560bbe9145b17b41502c204034e60b
$ docker ps
CONTAINER ID IMAGE COMMAND CREATED ST=
ATUS PORTS NAMES
2b52ee072b1f postgres:10.10 "docker-entrypoint.s=E2=80=A6" 2 seconds a=
go Up 1 seconds 5432/tcp blah_blah
$ guix shell xeyes -- xeyes
substitute: updating substitutes from 'https://ci.guix.gnu.org'... 100.0%
0.0 MB will be downloaded
xeyes-1.1.2 11KiB =
613KiB/s 00:00 [##################] 100.0%
The following derivation will be built:
/gnu/store/xc002hxl4g8mskqmpm0grsk8s45m91gz-profile.drv
applying 4 grafts for xeyes-1.1.2 ...
building CA certificate bundle...
listing Emacs sub-directories...
building fonts directory...
building directory of Info manuals...
building profile with 1 package...
$ docker ps
CONTAINER ID IMAGE COMMAND CREATED ST=
ATUS PORTS NAMES
$ exit
First we see no docker containers are running, then we start postgres-10
from docker hub, we see its container is running, then we do something
using guix-shell on an application *not already available on this
system*, and now the container died. This does not work the second time
when the "derivation" is already "built".
Cheers,
Remco
Remco van 't Veer <remco@HIDDEN>:bug-guix@HIDDEN.
Full text available.bug-guix@HIDDEN:bug#55358; Package guix.
Full text available.
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