Ricardo Wurmus <rekado@HIDDEN>
to control <at> debbugs.gnu.org.
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From: Ricardo Wurmus <rekado@HIDDEN>
To: 55379 <at> debbugs.gnu.org
Subject: [PATCH 01/14] gnu: Add r-gpg.
Date: Sun, 18 Dec 2022 09:58:47 +0100
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Hi Kyle,
I=E2=80=99ve been trying to apply these patches but haven=E2=80=99t been su=
ccessful.
Have they been generated with =E2=80=9Cgit format-patch=E2=80=9D? It looks=
like they
haven=E2=80=99t. You can generate a patch series for the last 14 commits w=
ith
=E2=80=9Cgit format-patch -14=E2=80=9D, for example. To send an updated pa=
tch set you
can use =E2=80=9C--reroll-count=E2=80=9D (or =E2=80=9C-v=E2=80=9D), e.g. =
=E2=80=9C--reroll-count 2=E2=80=9D. This
generates emails with =E2=80=9C[PATCH v2 =E2=80=A6]=E2=80=9D subjects, so w=
e can automatically
extract all patches belonging to this new patch set.
I would be very happy if you could refresh this patch set on top of the
current =E2=80=9Cmaster=E2=80=9D branch.
Please add each package definition to the file in alphabetic order. It
simplifies future maintenance.
I see that the descriptions contain straight single quotes for procedure
names and package names. We prefer to use texinfo syntax for procedures
instead, e.g. =E2=80=9C@code{glm()}=E2=80=9D instead of =E2=80=9C'glm()'=E2=
=80=9D. There are also some
packages that have only sentence fragments for descriptions (e.g. r-ca).
Could you please turn those into complete sentences? A common fix is to
prefix the description with =E2=80=9CThis package provides=E2=80=9D.
Thanks!
--=20
Ricardo
guix-patches@HIDDEN:bug#55379; Package guix-patches.
Full text available.Received: (at 55379) by debbugs.gnu.org; 18 May 2022 01:10:19 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Tue May 17 21:10:19 2022 Received: from localhost ([127.0.0.1]:58452 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nr8Cg-0007iD-RP for submit <at> debbugs.gnu.org; Tue, 17 May 2022 21:10:19 -0400 Received: from mout02.posteo.de ([185.67.36.66]:47081) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <kyle@HIDDEN>) id 1nr8Cd-0007hw-Ue for 55379 <at> debbugs.gnu.org; Tue, 17 May 2022 21:10:17 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout02.posteo.de (Postfix) with ESMTPS id 765B1240107 for <55379 <at> debbugs.gnu.org>; Wed, 18 May 2022 03:10:09 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1652836209; bh=zbLbIUF+sIfqZZyw9mTBR+BrV8r3a6GB8kjOCWDLxzU=; h=From:To:Cc:Subject:Date:From; b=Uosn4nEiEyhBGiPoF4kgc6HoE/SqwHjzdTd49I9j28KgHnv54aifYawjpChzrt0AB a0JgM1Xu2ka56XEaj2f7zBTJ9hyeBu7ehditD7QiDao4+a8hkoA4OAILlVZE+WdY2+ 1GVAclCEttdasqWsFZ/BFen7r2s9zR+UVHrgvDRVcDYJjhGbEI3uSSo9IVvvTVpdvW n2fGt/nKoSXn0AkO4hT3lV9ARZFnLTep1qNf8j/4++0h13Adad1mdM4dRe0m+QRKVZ aAAJJ0ZCmjlZ31JUrx+NbzZRaFWEx5rcFG3V7FNt+ZQkyHi9dSk+zMv8pVbOqtXQDC 6HwXpr1pkxJyw== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4L2vzg5yXLz9rxF; Wed, 18 May 2022 03:10:07 +0200 (CEST) References: <d28d8263c5619db922a5ca3aa494fb96dd13786d.1651893550.git.kyle@HIDDEN> <1f41a6214bca3a6d4ce93866e9c4467319309084.1651893551.git.kyle@HIDDEN> <a4e18988582b5a99613048ac6710b8f7e4bdb64b.camel@HIDDEN> From: Kyle Andrews <kyle@HIDDEN> To: Maxime Devos <maximedevos@HIDDEN> Subject: Re: [bug#55379] [PATCH 04/14] gnu: Add r-unpivotr. Date: Wed, 18 May 2022 01:09:07 +0000 In-reply-to: <a4e18988582b5a99613048ac6710b8f7e4bdb64b.camel@HIDDEN> Message-ID: <877d6jd4sz.fsf@HIDDEN> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 55379 Cc: 55379 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -3.3 (---) Maxime Devos <maximedevos@HIDDEN> writes: > [[PGP Signed Part:Undecided]] > kyle schreef op do 12-05-2022 om 02:10 [+0000]: >> +=C2=A0=C2=A0 (license license:expat))) > > > The license text appears to be missing, even though the Expat license > says: > > [...] subject to the following conditions: > > The above copyright notice and this permission notice shall be > included in all copies or substantial portions of the Software. > > So as-is, I don't think we can include r-unpivotr in Guix. Would > probably be easily resolved with a PR or issue at > <https://github.com/nacnudus/unpivotr>. > > Greetings, > Maxime. > > [[End of PGP Signed Part]] I did just that and the package author merged my pull request with the MIT license text. Cheers, Kyle
guix-patches@HIDDEN:bug#55379; Package guix-patches.
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From: Kyle Andrews <kyle@HIDDEN>
To: Maxime Devos <maximedevos@HIDDEN>
Subject: Re: [bug#55379] [PATCH 01/14] gnu: Add r-gpg.
Date: Sun, 15 May 2022 16:24:42 +0000
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--=-=-=
Content-Type: text/plain
Hi Maxime,
Here is the version of the GPG package which I intended to send in the
first place with the verbiage about GPG4WIN removed per your suggestion.
8<------------------------------------------------------------------------------------
(define-public r-gpg
(package
(name "r-gpg")
(version "1.2.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "gpg" version))
(sha256
(base32 "17rvi3qff2kanqr3g20dzhn48bfh5sv57g0wsamndzcif7rhjhby"))))
(properties `((upstream-name . "gpg")))
(build-system r-build-system)
(propagated-inputs (list r-askpass r-curl))
(native-inputs (list pkg-config r-knitr gpgme gnupg))
(home-page "https://github.com/jeroen/gpg")
(synopsis "GNU Privacy Guard for R")
(description
"Bindings to GnuPG for working with OpenGPG (RFC4880) cryptographic methods.
Includes utilities for public key encryption, creating and verifying digital
signatures, and managing your local keyring. Some functionality depends on the
version of GnuPG that is installed on the system.")
(license license:expat)))
------------------------------------------------------------------------------------>8
I have also attached a new patch.
Kyle
--=-=-=
Content-Type: text/x-patch
Content-Disposition: attachment; filename=0001-gnu-Add-r-gpg.patch
Content-Description: Updated r-gpg patch.
From 23af100007b123ee093cff333b2235b9cb394d2e Mon Sep 17 00:00:00 2001
Message-Id: <23af100007b123ee093cff333b2235b9cb394d2e.1652632450.git.kyle@HIDDEN>
From: Kyle Andrews <kyle@HIDDEN>
Date: Sun, 15 May 2022 12:33:26 -0400
Subject: [PATCH] gnu: Add r-gpg.
---
gnu/packages/cran.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5c05f20ea7..b34eba8f76 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33255,3 +33255,26 @@ (define-public r-zoeppritz
coefficients or scattering amplitudes, for seismological P and S-waves at an
interface.")
(license license:gpl2+)))
+
+(define-public r-gpg
+ (package
+ (name "r-gpg")
+ (version "1.2.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "gpg" version))
+ (sha256
+ (base32 "17rvi3qff2kanqr3g20dzhn48bfh5sv57g0wsamndzcif7rhjhby"))))
+ (properties `((upstream-name . "gpg")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-askpass r-curl))
+ (native-inputs (list pkg-config r-knitr gpgme gnupg))
+ (home-page "https://github.com/jeroen/gpg")
+ (synopsis "GNU Privacy Guard for R")
+ (description
+ "Bindings to GnuPG for working with OpenGPG (RFC4880) cryptographic methods.
+Includes utilities for public key encryption, creating and verifying digital
+signatures, and managing your local keyring. Some functionality depends on the
+version of GnuPG that is installed on the system.")
+ (license license:expat)))
--
2.36.0
--=-=-=
Content-Type: text/plain; charset=utf-8
Content-Transfer-Encoding: quoted-printable
Maxime Devos <maximedevos@HIDDEN> writes:
> [[PGP Signed Part:Undecided]]
> Kyle Andrews schreef op za 14-05-2022 om 16:53 [+0000]:
>> > [[PGP Signed Part:Undecided]]
>> > kyle schreef op do 12-05-2022 om 02:10 [+0000]:
>> > > +=C2=A0=C2=A0 (propagated-inputs
>> > > +=C2=A0=C2=A0=C2=A0 `(("r-askpass" ,r-askpass) ("r-curl" ,r-curl)))
>> >=20
>> > Can probably be simplified to (propagated-inputs (list r-askpass)).
>> >=20
>>=20
>> According to the ~DESCRIPTION~ file the package will not build
>> without
>> both askpass and curl R packages. So, I will leave those in.
>
> Oops I meant (propagated-inputs (list r-askpass r-curl)) here -- keep
> the inputs, but remove the labels, as per
> <https://guix.gnu.org/en/blog/2021/the-big-change/>.
>
> Greetings,
> Maxime.
>
> [[End of PGP Signed Part]]
--=-=-=--
guix-patches@HIDDEN:bug#55379; Package guix-patches.
Full text available.Received: (at 55379) by debbugs.gnu.org; 14 May 2022 18:08:06 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Sat May 14 14:08:06 2022 Received: from localhost ([127.0.0.1]:47471 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1npwBS-0000eE-A7 for submit <at> debbugs.gnu.org; Sat, 14 May 2022 14:08:06 -0400 Received: from andre.telenet-ops.be ([195.130.132.53]:34228) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <maximedevos@HIDDEN>) id 1npwBO-0000df-7p for 55379 <at> debbugs.gnu.org; Sat, 14 May 2022 14:08:02 -0400 Received: from [172.20.10.9] ([188.188.205.199]) by andre.telenet-ops.be with bizsmtp id Wi7v270014JfCZ001i80LV; Sat, 14 May 2022 20:08:01 +0200 Message-ID: <1b2f89411c60978a60844f41a4fd79c0c524e694.camel@HIDDEN> Subject: Re: [bug#55379] [PATCH 01/14] gnu: Add r-gpg. From: Maxime Devos <maximedevos@HIDDEN> To: Kyle Andrews <kyle@HIDDEN> Date: Sat, 14 May 2022 18:07:46 +0000 In-Reply-To: <87bkw0jb3i.fsf@HIDDEN> References: <d28d8263c5619db922a5ca3aa494fb96dd13786d.1651893550.git.kyle@HIDDEN> <1ff91bc19a74b5d2418c70804abe3f3a5afc8b31.camel@HIDDEN> <87bkw0jb3i.fsf@HIDDEN> Content-Type: multipart/signed; micalg="pgp-sha512"; protocol="application/pgp-signature"; boundary="=-gfMzZPWQQjAGyTCU50sx" User-Agent: Evolution 3.38.3-1 MIME-Version: 1.0 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=telenet.be; s=r22; t=1652551681; bh=UlKsrSgn/ndDsIVXuzi+VN0njvpOR1ooEWUUIVgU27A=; h=Subject:From:To:Cc:Date:In-Reply-To:References; b=SubdGPbrEedO+elBMnvXXxZPzNmuZfmndilTYm1rnGQEvhpAm2HBHlKGsydCR42Ck aYzz8Ts7E75Uq9y8kK2Mq1OuV9N+8LmCVU9z8veGUjKup8I8zxzTjqVklLZtwwgiDQ Nvo9fs98S2lqjHJklqceUcQsTcFO9hldNHD6gv7jX0RQgSW95s2Dployx4Yvg5T/YU J705QmVSn+bMNxhBBziiWtbSBWaHj+YGmSVVbL0CbT5f6rYdUtYorrtcLT950kO+5n uEuCJz6MnTRztun5SXTdsr6VMX0OQwHOI3WV/PKvR+HSj8dwlVU7k2lvtEKOyBgwhO ul7lySs4JgCww== X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55379 Cc: 55379 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) --=-gfMzZPWQQjAGyTCU50sx Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable TBC I just looked at the package definitions a bit, it's not in-depth. E.g., in this case: + "R Interface to the 'Yacas' Computer Algebra System") + [...] TeXinfo markup can be used to make the 'Yacas' teletype when viewed from <https://guix.gnu.org/en/packages/> and to make the link hyperlink a hyperlink in "guix show" and the HTML. And a synopsis isn't a book title or such, it's just a phrase (though often not a complete sentence), so no need for mid-phrase capitals. There are also some other packages with missing license text, e.g. the first next package I chose (rust-gnm) doesn't seem to carry a copy of the GPL. Greetings, Maxime. --=-gfMzZPWQQjAGyTCU50sx Content-Type: application/pgp-signature; name="signature.asc" Content-Description: This is a digitally signed message part Content-Transfer-Encoding: 7bit -----BEGIN PGP SIGNATURE----- iI0EABYKADUWIQTB8z7iDFKP233XAR9J4+4iGRcl7gUCYn/v8hccbWF4aW1lZGV2 b3NAdGVsZW5ldC5iZQAKCRBJ4+4iGRcl7iduAQCWzxySCfp2y7YUUPIKzot3cxNG yoVtIUVS9k0tFGvhUgEAmIEb/o59Xcy6Bh/bXpOxrCnnxltu1omcuuX87PaGfQ0= =IdHW -----END PGP SIGNATURE----- --=-gfMzZPWQQjAGyTCU50sx--
guix-patches@HIDDEN:bug#55379; Package guix-patches.
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Subject: Re: [bug#55379] [PATCH 01/14] gnu: Add r-gpg.
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Kyle Andrews schreef op za 14-05-2022 om 16:53 [+0000]:
> > [[PGP Signed Part:Undecided]]
> > kyle schreef op do 12-05-2022 om 02:10 [+0000]:
> > > +=C2=A0=C2=A0 (propagated-inputs
> > > +=C2=A0=C2=A0=C2=A0 `(("r-askpass" ,r-askpass) ("r-curl" ,r-curl)))
> >=20
> > Can probably be simplified to (propagated-inputs (list r-askpass)).
> >=20
>=20
> According to the ~DESCRIPTION~ file the package will not build
> without
> both askpass and curl R packages. So, I will leave those in.
Oops I meant (propagated-inputs (list r-askpass r-curl)) here -- keep
the inputs, but remove the labels, as per
<https://guix.gnu.org/en/blog/2021/the-big-change/>.
Greetings,
Maxime.
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guix-patches@HIDDEN:bug#55379; Package guix-patches.
Full text available.Received: (at 55379) by debbugs.gnu.org; 14 May 2022 10:53:40 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Sat May 14 06:53:40 2022 Received: from localhost ([127.0.0.1]:45823 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nppP1-0008W0-Tg for submit <at> debbugs.gnu.org; Sat, 14 May 2022 06:53:40 -0400 Received: from laurent.telenet-ops.be ([195.130.137.89]:50348) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <maximedevos@HIDDEN>) id 1nppOz-0008Vm-71 for 55379 <at> debbugs.gnu.org; Sat, 14 May 2022 06:53:38 -0400 Received: from [192.168.222.254] ([188.189.252.23]) by laurent.telenet-ops.be with bizsmtp id WatZ270070X38ms01atZ1l; Sat, 14 May 2022 12:53:34 +0200 Message-ID: <a4e18988582b5a99613048ac6710b8f7e4bdb64b.camel@HIDDEN> Subject: Re: [bug#55379] [PATCH 04/14] gnu: Add r-unpivotr. From: Maxime Devos <maximedevos@HIDDEN> To: kyle <kyle@HIDDEN>, 55379 <at> debbugs.gnu.org Date: Sat, 14 May 2022 12:53:28 +0200 In-Reply-To: <1f41a6214bca3a6d4ce93866e9c4467319309084.1651893551.git.kyle@HIDDEN> References: <d28d8263c5619db922a5ca3aa494fb96dd13786d.1651893550.git.kyle@HIDDEN> <1f41a6214bca3a6d4ce93866e9c4467319309084.1651893551.git.kyle@HIDDEN> Content-Type: multipart/signed; micalg="pgp-sha512"; protocol="application/pgp-signature"; boundary="=-UPSw2TjuYPU40eT8wPZx" User-Agent: Evolution 3.38.3-1 MIME-Version: 1.0 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=telenet.be; s=r22; t=1652525614; bh=ltZRgroSCecVcWJ4RT1a7OVZk/8rEnMSNFXfjyyY38s=; h=Subject:From:To:Date:In-Reply-To:References; b=WaYQkXCAl/L7RNCmRXUsHbxik+Tkb3crACJNsj1jzz3KJBCqo1fNWouMEPFWqk47W fWEfUF4Y0bBnxCC31AFfg+WcwV26Wo09F8q0YmzCuPw/l5bjhU+/l/Q+He07L7VKe/ cO1LeDB7P/kpHD+ugK+WDn3nCvzYIxN3NZ2fzyZJ38AKlXrwH9qPDHiebsvZrGFVKp g49OQq2/sTKaBQs4q3QRaQuGDzn0fLk1gMQSo9qb40QhB6aAGxWM8ll76jnsme+qZo AAXVArfUJ/TpftnSp81o2yZadTle4FZSZToWjxmPjZguVyurzUvAHEglZaQHb3U81m AcMavTyw4zG+g== X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 55379 X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) --=-UPSw2TjuYPU40eT8wPZx Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable kyle schreef op do 12-05-2022 om 02:10 [+0000]: > +=C2=A0=C2=A0 (license license:expat))) The license text appears to be missing, even though the Expat license says: [...] subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. So as-is, I don't think we can include r-unpivotr in Guix. Would probably be easily resolved with a PR or issue at <https://github.com/nacnudus/unpivotr>. Greetings, Maxime. --=-UPSw2TjuYPU40eT8wPZx Content-Type: application/pgp-signature; name="signature.asc" Content-Description: This is a digitally signed message part Content-Transfer-Encoding: 7bit -----BEGIN PGP SIGNATURE----- iI0EABYKADUWIQTB8z7iDFKP233XAR9J4+4iGRcl7gUCYn+KKBccbWF4aW1lZGV2 b3NAdGVsZW5ldC5iZQAKCRBJ4+4iGRcl7kmfAP92riYjFDLbIMJjNt0SLets6lMg JYQdLhwizwkVlQfRigD8CDxq5m/5bGkMHz9BsJ7bkYsIc0Q24PFIiiMG99K8WQY= =Wzex -----END PGP SIGNATURE----- --=-UPSw2TjuYPU40eT8wPZx--
guix-patches@HIDDEN:bug#55379; Package guix-patches.
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Subject: Re: [bug#55379] [PATCH 01/14] gnu: Add r-gpg.
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kyle schreef op do 12-05-2022 om 02:10 [+0000]:
> +=C2=A0=C2=A0 (propagated-inputs
> +=C2=A0=C2=A0=C2=A0 `(("r-askpass" ,r-askpass) ("r-curl" ,r-curl)))
Can probably be simplified to (propagated-inputs (list r-askpass)).
> +=C2=A0=C2=A0 (inputs
> +=C2=A0=C2=A0=C2=A0 `(("gpgme" ,gpgme) ("gnupg" ,gnupg)))
Likewise.
> +=C2=A0=C2=A0 (native-inputs
> +=C2=A0=C2=A0=C2=A0 `(("pkg-config" ,pkg-config) ("r-knitr" ,r-knitr)))
Likewise.
> + (home-page
> + "https://jeroen.cran.dev/gpg/https://github.com/jeroen/gpg")
Either https://jeroen.cran.dev/gpg/ or <https://github.com/jeroen/gpg>,
the combination gives a 404 Not Found.
> Note that some functionality depends on the version of GnuPG that is
> installed on the system.
Maybe make sure that it only invokes the "gnupg" by absolute file name
such that this isn't the case.
> On Windows this package can be used together with 'GPG4Win' which
> provides a GUI for managing keys and entering passphrases.
While theoretically Guix supports cross-compilation to Windows, I don't
see GPG4Win in the package inputs and I'd expect cross-compiling r-gpg
to Windows to fail, so I would remove this paragraph since currently
it's a bit misleading.
Greetings,
Maxime.
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From: kyle <kyle@HIDDEN>
To: guix-patches@HIDDEN
Subject: [PATCH 14/14] gnu: Add r-genoud.
Date: Thu, 12 May 2022 02:10:34 +0000
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From: Kyle Andrews <kyle@HIDDEN>
---
gnu/packages/cran.scm | 20 ++++++++++++++++++++
1 file changed, 20 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 30ca01c0a0..2bd741d254 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33531,6 +33531,26 @@ (define-public r-showimage
"Sometimes it is handy to be able to view an image file on an 'R' graphics device. This package just does that. Currently it supports 'PNG' files.")
(license (list license:gpl2 license:gpl3))))
+(define-public r-rgenoud
+ (package
+ (name "r-rgenoud")
+ (version "5.8-3.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "rgenoud" version))
+ (sha256
+ (base32
+ "0p93wf6ghgz2nifxbscb6bhahh5jd2ba7nh1c2mb6fmbxnsi3swv"))))
+ (properties `((upstream-name . "rgenoud")))
+ (build-system r-build-system)
+ (home-page "http://sekhon.berkeley.edu/rgenoud/")
+ (synopsis
+ "R Version of GENetic Optimization Using Derivatives")
+ (description
+ "This package provides a genetic algorithm plus derivative optimizer.")
+ (license license:gpl3)))
+
(define r-gpg
(package
--
2.36.0
guix-patches@HIDDEN:bug#55379; Package guix-patches.
Full text available.
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From: kyle <kyle@HIDDEN>
To: guix-patches@HIDDEN
Subject: [PATCH 10/14] gnu: Add r-relimp.
Date: Thu, 12 May 2022 02:10:30 +0000
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From: Kyle Andrews <kyle@HIDDEN>
---
gnu/packages/cran.scm | 20 ++++++++++++++++++++
1 file changed, 20 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 0114be8b0f..f578cdfa2a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33446,6 +33446,26 @@ (define-public r-qvcalc
"This package provides functions to compute quasi variances and associated measures of approximation error.")
(license (list license:gpl2+ license:gpl3+))))
+(define-public r-relimp
+ (package
+ (name "r-relimp")
+ (version "1.0-5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "relimp" version))
+ (sha256
+ (base32
+ "0ydn82g8xdqzhf34187080bbpcpw1zdjbj2i3dv1d6d35vvprb5c"))))
+ (properties `((upstream-name . "relimp")))
+ (build-system r-build-system)
+ (home-page "http://warwick.ac.uk/relimp")
+ (synopsis
+ "Relative Contribution of Effects in a Regression Model")
+ (description
+ "This package provides functions to facilitate inference on the relative importance of predictors in a linear or generalized linear model, and a couple of useful Tcl/Tk widgets.")
+ (license license:gpl2+)))
+
(define r-gpg
(package
--
2.36.0
guix-patches@HIDDEN:bug#55379; Package guix-patches.
Full text available.
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From: kyle <kyle@HIDDEN>
To: guix-patches@HIDDEN
Subject: [PATCH 13/14] gnu: Add r-showimage.
Date: Thu, 12 May 2022 02:10:33 +0000
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From: Kyle Andrews <kyle@HIDDEN>
---
gnu/packages/cran.scm | 22 ++++++++++++++++++++++
1 file changed, 22 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index a2a29f8cdb..30ca01c0a0 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33509,6 +33509,28 @@ (define-public r-ryacas
"Interface to the 'yacas' computer algebra system (<http://www.yacas.org/>).")
(license (list license:gpl2+ license:gpl3+))))
+(define-public r-showimage
+ (package
+ (name "r-showimage")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "showimage" version))
+ (sha256
+ (base32
+ "1c0x3iqjdjsz3cdhc02b3qm2pwxjr1q2k87jwvxj9lnzzw81f1pl"))))
+ (properties `((upstream-name . "showimage")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-png))
+ (home-page
+ "https://github.com/r-lib/showimage#readme")
+ (synopsis
+ "Show an Image on an 'R' Graphics Device")
+ (description
+ "Sometimes it is handy to be able to view an image file on an 'R' graphics device. This package just does that. Currently it supports 'PNG' files.")
+ (license (list license:gpl2 license:gpl3))))
+
(define r-gpg
(package
--
2.36.0
guix-patches@HIDDEN:bug#55379; Package guix-patches.
Full text available.
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From: kyle <kyle@HIDDEN>
To: guix-patches@HIDDEN
Subject: [PATCH 12/14] gnu: Add r-ryacas.
Date: Thu, 12 May 2022 02:10:32 +0000
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From: Kyle Andrews <kyle@HIDDEN>
---
gnu/packages/cran.scm | 22 ++++++++++++++++++++++
1 file changed, 22 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 0c7a3d55ff..a2a29f8cdb 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33487,6 +33487,28 @@ (define-public r-rpicosat
"Bindings for the 'PicoSAT' solver to solve Boolean satisfiability problems (SAT). The boolean satisfiability problem asks the question if a given boolean formula can be TRUE; i.e. does there exist an assignment of TRUE/FALSE for each variable such that the whole formula is TRUE? The package bundles 'PicoSAT' solver release 965 <http://www.fmv.jku.at/picosat/>.")
(license license:expat)))
+(define-public r-ryacas
+ (package
+ (name "r-ryacas")
+ (version "1.1.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "Ryacas" version))
+ (sha256
+ (base32
+ "12vkylq06c7kqvvf662cyzhdcnpy928xsjflf1kf0nh6y00gywf8"))))
+ (properties `((upstream-name . "Ryacas")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-magrittr r-rcpp))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/r-cas/ryacas")
+ (synopsis
+ "R Interface to the 'Yacas' Computer Algebra System")
+ (description
+ "Interface to the 'yacas' computer algebra system (<http://www.yacas.org/>).")
+ (license (list license:gpl2+ license:gpl3+))))
+
(define r-gpg
(package
--
2.36.0
guix-patches@HIDDEN:bug#55379; Package guix-patches.
Full text available.
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From: kyle <kyle@HIDDEN>
To: guix-patches@HIDDEN
Subject: [PATCH 11/14] gnu: Add r-picosat.
Date: Thu, 12 May 2022 02:10:31 +0000
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From: Kyle Andrews <kyle@HIDDEN>
---
gnu/packages/cran.scm | 21 +++++++++++++++++++++
1 file changed, 21 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f578cdfa2a..0c7a3d55ff 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33466,6 +33466,27 @@ (define-public r-relimp
"This package provides functions to facilitate inference on the relative importance of predictors in a linear or generalized linear model, and a couple of useful Tcl/Tk widgets.")
(license license:gpl2+)))
+(define-public r-rpicosat
+ (package
+ (name "r-rpicosat")
+ (version "1.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "rpicosat" version))
+ (sha256
+ (base32
+ "1zj2d6jairmvya91vhv9kpkf34zmzl9vlha5yvfjj0j0apmqc0li"))))
+ (properties `((upstream-name . "rpicosat")))
+ (build-system r-build-system)
+ (home-page
+ "https://github.com/dirkschumacher/rpicosat")
+ (synopsis
+ "R Bindings for the 'PicoSAT' SAT Solver")
+ (description
+ "Bindings for the 'PicoSAT' solver to solve Boolean satisfiability problems (SAT). The boolean satisfiability problem asks the question if a given boolean formula can be TRUE; i.e. does there exist an assignment of TRUE/FALSE for each variable such that the whole formula is TRUE? The package bundles 'PicoSAT' solver release 965 <http://www.fmv.jku.at/picosat/>.")
+ (license license:expat)))
+
(define r-gpg
(package
--
2.36.0
guix-patches@HIDDEN:bug#55379; Package guix-patches.
Full text available.
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From: kyle <kyle@HIDDEN>
To: guix-patches@HIDDEN
Subject: [PATCH 09/14] gnu: Add r-gnm.
Date: Thu, 12 May 2022 02:10:29 +0000
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From: Kyle Andrews <kyle@HIDDEN>
---
gnu/packages/cran.scm | 21 +++++++++++++++++++++
1 file changed, 21 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b86ab6127d..0114be8b0f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33405,6 +33405,27 @@ (define-public r-ca
"Computation and visualization of simple, multiple and joint correspondence analysis.")
(license (list license:gpl2+ license:gpl3+))))
+(define-public r-gnm
+ (package
+ (name "r-gnm")
+ (version "1.1-1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "gnm" version))
+ (sha256
+ (base32
+ "1lddsdsg43wpg681s906i4xqqfbjdd1qb9ml5dfprb02i1806aa2"))))
+ (properties `((upstream-name . "gnm")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-mass r-matrix r-nnet r-qvcalc r-relimp))
+ (home-page "https://github.com/hturner/gnm")
+ (synopsis "Generalized Nonlinear Models")
+ (description
+ "This package provides functions to specify and fit generalized nonlinear models, including models with multiplicative interaction terms such as the UNIDIFF model from sociology and the AMMI model from crop science, and many others. Over-parameterized representations of models are used throughout; functions are provided for inference on estimable parameter combinations, as well as standard methods for diagnostics etc.")
+ (license (list license:gpl2+ license:gpl3+))))
+
(define-public r-qvcalc
(package
(name "r-qvcalc")
--
2.36.0
guix-patches@HIDDEN:bug#55379; Package guix-patches.
Full text available.
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From: kyle <kyle@HIDDEN>
To: guix-patches@HIDDEN
Subject: [PATCH 08/14] gnu: Add r-qvcalc.
Date: Thu, 12 May 2022 02:10:28 +0000
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From: Kyle Andrews <kyle@HIDDEN>
---
gnu/packages/cran.scm | 21 +++++++++++++++++++++
1 file changed, 21 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b5946070b0..b86ab6127d 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33405,6 +33405,27 @@ (define-public r-ca
"Computation and visualization of simple, multiple and joint correspondence analysis.")
(license (list license:gpl2+ license:gpl3+))))
+(define-public r-qvcalc
+ (package
+ (name "r-qvcalc")
+ (version "1.0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "qvcalc" version))
+ (sha256
+ (base32
+ "0banzv78kb53ybfbh1hmgx7kxvpbbdxzg4dsn7vrwhmxs72srkch"))))
+ (properties `((upstream-name . "qvcalc")))
+ (build-system r-build-system)
+ (home-page "https://davidfirth.github.io/qvcalc")
+ (synopsis
+ "Quasi Variances for Factor Effects in Statistical Models")
+ (description
+ "This package provides functions to compute quasi variances and associated measures of approximation error.")
+ (license (list license:gpl2+ license:gpl3+))))
+
+
(define r-gpg
(package
(name "r-gpg")
--
2.36.0
guix-patches@HIDDEN:bug#55379; Package guix-patches.
Full text available.
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From: kyle <kyle@HIDDEN>
To: guix-patches@HIDDEN
Subject: [PATCH 03/14] gnu: Add r-tidyxl.
Date: Thu, 12 May 2022 02:10:23 +0000
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From: Kyle Andrews <kyle@HIDDEN>
---
gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 57166bacdc..9578263789 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33279,6 +33279,30 @@ (define-public r-piton
grammars and easily expose them in R packages.")
(license license:expat)))
+
+(define-public r-tidyxl
+ (package
+ (name "r-tidyxl")
+ (version "1.0.7")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "tidyxl" version))
+ (sha256
+ (base32 "1wg8h5fd2hd8ilshrbcs99q18p15687dx8j51v5pyd30pg5cab7b"))))
+ (properties `((upstream-name . "tidyxl")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-piton r-rcpp))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/nacnudus/tidyxl")
+ (synopsis "Read Untidy Excel Files")
+ (description
+ "Imports non-tabular from Excel files into R. Exposes cell content, position and
+formatting in a tidy structure for further manipulation. Tokenizes Excel
+formulas. Supports '.xlsx' and '.xlsm' via the embedded 'RapidXML' C++ library
+<http://rapidxml.sourceforge.net>. Does not support '.xlsb' or '.xls'.")
+ (license license:gpl3)))
+
(define r-gpg
(package
(name "r-gpg")
--
2.36.0
guix-patches@HIDDEN:bug#55379; Package guix-patches.
Full text available.
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From: kyle <kyle@HIDDEN>
To: guix-patches@HIDDEN
Subject: [PATCH 07/14] gnu: Add r-ca.
Date: Thu, 12 May 2022 02:10:27 +0000
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From: Kyle Andrews <kyle@HIDDEN>
---
gnu/packages/cran.scm | 20 ++++++++++++++++++++
1 file changed, 20 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 2cd4b8d2a6..b5946070b0 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33385,6 +33385,26 @@ (define-public r-vcdextra
Friendly and David Meyer.")
(license license:gpl2+)))
+(define-public r-ca
+ (package
+ (name "r-ca")
+ (version "0.71.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ca" version))
+ (sha256
+ (base32
+ "095lk7p2b9835hc3a03c4019wg0baf0dhz6c2vqpaq1m9k4jy304"))))
+ (properties `((upstream-name . "ca")))
+ (build-system r-build-system)
+ (home-page "http://www.carme-n.org/")
+ (synopsis
+ "Simple, Multiple and Joint Correspondence Analysis")
+ (description
+ "Computation and visualization of simple, multiple and joint correspondence analysis.")
+ (license (list license:gpl2+ license:gpl3+))))
+
(define r-gpg
(package
(name "r-gpg")
--
2.36.0
guix-patches@HIDDEN:bug#55379; Package guix-patches.
Full text available.
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From: kyle <kyle@HIDDEN>
To: guix-patches@HIDDEN
Subject: [PATCH 06/14] gnu: Add r-vcdextra.
Date: Thu, 12 May 2022 02:10:26 +0000
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From: Kyle Andrews <kyle@HIDDEN>
---
gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 516c335822..2cd4b8d2a6 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33358,6 +33358,33 @@ (define-public r-unglue
more intuitive and compact way than by using standard regular expressions.")
(license license:gpl3)))
+(define-public r-vcdextra
+ (package
+ (name "r-vcdextra")
+ (version "0.8-0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "vcdExtra" version))
+ (sha256
+ (base32 "1wv1ypjdvw639jlphwfpqgpjkk4ki98l2lfbpncsbpy9jpknjsmk"))))
+ (properties `((upstream-name . "vcdExtra")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-ca r-gnm r-mass r-vcd))
+ (native-inputs (list r-knitr))
+ (home-page "https://friendly.github.io/vcdExtra/")
+ (synopsis "'vcd' Extensions and Additions")
+ (description
+ "This package provides additional data sets, methods and documentation to
+complement the 'vcd' package for Visualizing Categorical Data and the 'gnm'
+package for Generalized Nonlinear Models. In particular, 'vcdExtra' extends
+mosaic, assoc and sieve plots from 'vcd' to handle 'glm()' and 'gnm()' models
+and adds a 3D version in 'mosaic3d'. Additionally, methods are provided for
+comparing and visualizing lists of 'glm' and 'loglm' objects. This package is
+now a support package for the book, \"Discrete Data Analysis with R\" by Michael
+Friendly and David Meyer.")
+ (license license:gpl2+)))
+
(define r-gpg
(package
(name "r-gpg")
--
2.36.0
guix-patches@HIDDEN:bug#55379; Package guix-patches.
Full text available.
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From: kyle <kyle@HIDDEN>
To: guix-patches@HIDDEN
Subject: [PATCH 04/14] gnu: Add r-unpivotr.
Date: Thu, 12 May 2022 02:10:24 +0000
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From: Kyle Andrews <kyle@HIDDEN>
---
gnu/packages/cran.scm | 35 +++++++++++++++++++++++++++++++++++
1 file changed, 35 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 9578263789..213f810d04 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33303,6 +33303,41 @@ (define-public r-tidyxl
<http://rapidxml.sourceforge.net>. Does not support '.xlsb' or '.xls'.")
(license license:gpl3)))
+(define-public r-unpivotr
+ (package
+ (name "r-unpivotr")
+ (version "0.6.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "unpivotr" version))
+ (sha256
+ (base32 "1paqx2jn8gh4nd4zm8iwxpf38znzwwqli62ww7f3k5vwkf34r078"))))
+ (properties `((upstream-name . "unpivotr")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-cellranger
+ r-dplyr
+ r-forcats
+ r-magrittr
+ r-pillar
+ r-purrr
+ r-rlang
+ r-tibble
+ r-tidyr
+ r-tidyselect
+ r-xml2))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/nacnudus/unpivotr")
+ (synopsis "Unpivot Complex and Irregular Data Layouts")
+ (description
+ "Tools for converting data from complex or irregular layouts to a columnar
+structure. For example, tables with multilevel column or row headers, or
+spreadsheets. Header and data cells are selected by their contents and
+position, as well as formatting and comments where available, and are associated
+with one other by their proximity in given directions. Functions for data
+frames and HTML tables are provided.")
+ (license license:expat)))
(define r-gpg
(package
(name "r-gpg")
--
2.36.0
guix-patches@HIDDEN:bug#55379; Package guix-patches.
Full text available.
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From: kyle <kyle@HIDDEN>
To: guix-patches@HIDDEN
Subject: [PATCH 01/14] gnu: Add r-gpg.
Date: Thu, 12 May 2022 02:10:21 +0000
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From: Kyle Andrews <kyle@HIDDEN>
---
gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5c05f20ea7..f69a7dd605 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -103,6 +103,7 @@ (define-module (gnu packages cran)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages sqlite)
#:use-module (gnu packages statistics)
+ #:use-module (gnu packages gnupg)
#:use-module (gnu packages tcl)
#:use-module (gnu packages textutils)
#:use-module (gnu packages tls)
@@ -33255,3 +33256,29 @@ (define-public r-zoeppritz
coefficients or scattering amplitudes, for seismological P and S-waves at an
interface.")
(license license:gpl2+)))
+
+(define r-gpg
+ (package
+ (name "r-gpg")
+ (version "1.2.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "gpg" version))
+ (sha256
+ (base32
+ "1qc7w4d6frp0j4yk0q7slkj1mps80bv78lixcpw1shgx48rp41kh"))))
+ (properties `((upstream-name . "gpg")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-askpass" ,r-askpass) ("r-curl" ,r-curl)))
+ (inputs
+ `(("gpgme" ,gpgme) ("gnupg" ,gnupg)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config) ("r-knitr" ,r-knitr)))
+ (home-page
+ "https://jeroen.cran.dev/gpg/https://github.com/jeroen/gpg")
+ (synopsis "GNU Privacy Guard for R")
+ (description
+ "Bindings to GnuPG for working with OpenGPG (RFC4880) cryptographic methods. Includes utilities for public key encryption, creating and verifying digital signatures, and managing your local keyring. Note that some functionality depends on the version of GnuPG that is installed on the system. On Windows this package can be used together with 'GPG4Win' which provides a GUI for managing keys and entering passphrases.")
+ (license license:expat)))
--
2.36.0
kyle <kyle@HIDDEN>:guix-patches@HIDDEN.
Full text available.guix-patches@HIDDEN:bug#55379; Package guix-patches.
Full text available.
GNU bug tracking system
Copyright (C) 1999 Darren O. Benham,
1997 nCipher Corporation Ltd,
1994-97 Ian Jackson.