GNU bug report logs - #55379
[PATCH 01/14] gnu: Add r-gpg.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: kyle <kyle <at> posteo.net>
To: guix-patches <at> gnu.org
Cc: Kyle Andrews <kyle <at> posteo.net>
Subject: [PATCH 01/14] gnu: Add r-gpg.
Date: Thu, 12 May 2022 02:10:21 +0000

From: Kyle Andrews <kyle <at> posteo.net>

---
 gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5c05f20ea7..f69a7dd605 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -103,6 +103,7 @@ (define-module (gnu packages cran)
   #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages sqlite)
   #:use-module (gnu packages statistics)
+  #:use-module (gnu packages gnupg)
   #:use-module (gnu packages tcl)
   #:use-module (gnu packages textutils)
   #:use-module (gnu packages tls)
@@ -33255,3 +33256,29 @@ (define-public r-zoeppritz
 coefficients or scattering amplitudes, for seismological P and S-waves at an
 interface.")
     (license license:gpl2+)))
+
+(define r-gpg
+  (package
+   (name "r-gpg")
+   (version "1.2.2")
+   (source
+    (origin
+     (method url-fetch)
+     (uri (cran-uri "gpg" version))
+     (sha256
+      (base32
+       "1qc7w4d6frp0j4yk0q7slkj1mps80bv78lixcpw1shgx48rp41kh"))))
+   (properties `((upstream-name . "gpg")))
+   (build-system r-build-system)
+   (propagated-inputs
+    `(("r-askpass" ,r-askpass) ("r-curl" ,r-curl)))
+   (inputs
+    `(("gpgme" ,gpgme) ("gnupg" ,gnupg)))
+   (native-inputs
+    `(("pkg-config" ,pkg-config) ("r-knitr" ,r-knitr)))
+   (home-page
+    "https://jeroen.cran.dev/gpg/https://github.com/jeroen/gpg")
+   (synopsis "GNU Privacy Guard for R")
+   (description
+    "Bindings to GnuPG for working with OpenGPG (RFC4880) cryptographic methods.  Includes utilities for public key encryption, creating and verifying digital signatures, and managing your local keyring.  Note that some functionality depends on the version of GnuPG that is installed on the system.  On Windows this package can be used together with 'GPG4Win' which provides a GUI for managing keys and entering passphrases.")
+   (license license:expat)))
-- 
2.36.0

Message #8 received at submit <at> debbugs.gnu.org (full text, mbox):

From: kyle <kyle <at> posteo.net>
To: guix-patches <at> gnu.org
Cc: Kyle Andrews <kyle <at> posteo.net>
Subject: [PATCH 04/14] gnu: Add r-unpivotr.
Date: Thu, 12 May 2022 02:10:24 +0000

From: Kyle Andrews <kyle <at> posteo.net>

---
 gnu/packages/cran.scm | 35 +++++++++++++++++++++++++++++++++++
 1 file changed, 35 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 9578263789..213f810d04 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33303,6 +33303,41 @@ (define-public r-tidyxl
 <http://rapidxml.sourceforge.net>.  Does not support '.xlsb' or '.xls'.")
     (license license:gpl3)))
 
+(define-public r-unpivotr
+  (package
+   (name "r-unpivotr")
+   (version "0.6.2")
+   (source
+    (origin
+     (method url-fetch)
+     (uri (cran-uri "unpivotr" version))
+     (sha256
+      (base32 "1paqx2jn8gh4nd4zm8iwxpf38znzwwqli62ww7f3k5vwkf34r078"))))
+   (properties `((upstream-name . "unpivotr")))
+   (build-system r-build-system)
+   (propagated-inputs
+    (list r-cellranger
+          r-dplyr
+          r-forcats
+          r-magrittr
+          r-pillar
+          r-purrr
+          r-rlang
+          r-tibble
+          r-tidyr
+          r-tidyselect
+          r-xml2))
+   (native-inputs (list r-knitr))
+   (home-page "https://github.com/nacnudus/unpivotr")
+   (synopsis "Unpivot Complex and Irregular Data Layouts")
+   (description
+    "Tools for converting data from complex or irregular layouts to a columnar
+structure.  For example, tables with multilevel column or row headers, or
+spreadsheets.  Header and data cells are selected by their contents and
+position, as well as formatting and comments where available, and are associated
+with one other by their proximity in given directions.  Functions for data
+frames and HTML tables are provided.")
+   (license license:expat)))
 (define r-gpg
   (package
    (name "r-gpg")
-- 
2.36.0

Message #11 received at submit <at> debbugs.gnu.org (full text, mbox):

From: kyle <kyle <at> posteo.net>
To: guix-patches <at> gnu.org
Cc: Kyle Andrews <kyle <at> posteo.net>
Subject: [PATCH 06/14] gnu: Add r-vcdextra.
Date: Thu, 12 May 2022 02:10:26 +0000

From: Kyle Andrews <kyle <at> posteo.net>

---
 gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 516c335822..2cd4b8d2a6 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33358,6 +33358,33 @@ (define-public r-unglue
 more intuitive and compact way than by using standard regular expressions.")
    (license license:gpl3)))
 
+(define-public r-vcdextra
+  (package
+   (name "r-vcdextra")
+   (version "0.8-0")
+   (source
+    (origin
+     (method url-fetch)
+     (uri (cran-uri "vcdExtra" version))
+     (sha256
+      (base32 "1wv1ypjdvw639jlphwfpqgpjkk4ki98l2lfbpncsbpy9jpknjsmk"))))
+   (properties `((upstream-name . "vcdExtra")))
+   (build-system r-build-system)
+   (propagated-inputs (list r-ca r-gnm r-mass r-vcd))
+   (native-inputs (list r-knitr))
+   (home-page "https://friendly.github.io/vcdExtra/")
+   (synopsis "'vcd' Extensions and Additions")
+   (description
+    "This package provides additional data sets, methods and documentation to
+complement the 'vcd' package for Visualizing Categorical Data and the 'gnm'
+package for Generalized Nonlinear Models.  In particular, 'vcdExtra' extends
+mosaic, assoc and sieve plots from 'vcd' to handle 'glm()' and 'gnm()' models
+and adds a 3D version in 'mosaic3d'.  Additionally, methods are provided for
+comparing and visualizing lists of 'glm' and 'loglm' objects.  This package is
+now a support package for the book, \"Discrete Data Analysis with R\" by Michael
+Friendly and David Meyer.")
+   (license license:gpl2+)))
+
 (define r-gpg
   (package
    (name "r-gpg")
-- 
2.36.0

Message #14 received at submit <at> debbugs.gnu.org (full text, mbox):

From: kyle <kyle <at> posteo.net>
To: guix-patches <at> gnu.org
Cc: Kyle Andrews <kyle <at> posteo.net>
Subject: [PATCH 07/14] gnu: Add r-ca.
Date: Thu, 12 May 2022 02:10:27 +0000

From: Kyle Andrews <kyle <at> posteo.net>

---
 gnu/packages/cran.scm | 20 ++++++++++++++++++++
 1 file changed, 20 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 2cd4b8d2a6..b5946070b0 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33385,6 +33385,26 @@ (define-public r-vcdextra
 Friendly and David Meyer.")
    (license license:gpl2+)))
 
+(define-public r-ca
+  (package
+   (name "r-ca")
+   (version "0.71.1")
+   (source
+    (origin
+     (method url-fetch)
+     (uri (cran-uri "ca" version))
+     (sha256
+      (base32
+       "095lk7p2b9835hc3a03c4019wg0baf0dhz6c2vqpaq1m9k4jy304"))))
+   (properties `((upstream-name . "ca")))
+   (build-system r-build-system)
+   (home-page "http://www.carme-n.org/")
+   (synopsis
+    "Simple, Multiple and Joint Correspondence Analysis")
+   (description
+    "Computation and visualization of simple, multiple and joint correspondence analysis.")
+   (license (list license:gpl2+ license:gpl3+))))
+
 (define r-gpg
   (package
    (name "r-gpg")
-- 
2.36.0

Message #17 received at submit <at> debbugs.gnu.org (full text, mbox):

From: kyle <kyle <at> posteo.net>
To: guix-patches <at> gnu.org
Cc: Kyle Andrews <kyle <at> posteo.net>
Subject: [PATCH 03/14] gnu: Add r-tidyxl.
Date: Thu, 12 May 2022 02:10:23 +0000

From: Kyle Andrews <kyle <at> posteo.net>

---
 gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 57166bacdc..9578263789 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33279,6 +33279,30 @@ (define-public r-piton
 grammars and easily expose them in R packages.")
    (license license:expat)))
 
+
+(define-public r-tidyxl
+  (package
+    (name "r-tidyxl")
+    (version "1.0.7")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "tidyxl" version))
+       (sha256
+	(base32 "1wg8h5fd2hd8ilshrbcs99q18p15687dx8j51v5pyd30pg5cab7b"))))
+    (properties `((upstream-name . "tidyxl")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-piton r-rcpp))
+    (native-inputs (list r-knitr))
+    (home-page "https://github.com/nacnudus/tidyxl")
+    (synopsis "Read Untidy Excel Files")
+    (description
+     "Imports non-tabular from Excel files into R.  Exposes cell content, position and
+formatting in a tidy structure for further manipulation.  Tokenizes Excel
+formulas.  Supports '.xlsx' and '.xlsm' via the embedded 'RapidXML' C++ library
+<http://rapidxml.sourceforge.net>.  Does not support '.xlsb' or '.xls'.")
+    (license license:gpl3)))
+
 (define r-gpg
   (package
    (name "r-gpg")
-- 
2.36.0

Message #20 received at submit <at> debbugs.gnu.org (full text, mbox):

From: kyle <kyle <at> posteo.net>
To: guix-patches <at> gnu.org
Cc: Kyle Andrews <kyle <at> posteo.net>
Subject: [PATCH 08/14] gnu: Add r-qvcalc.
Date: Thu, 12 May 2022 02:10:28 +0000

From: Kyle Andrews <kyle <at> posteo.net>

---
 gnu/packages/cran.scm | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b5946070b0..b86ab6127d 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33405,6 +33405,27 @@ (define-public r-ca
     "Computation and visualization of simple, multiple and joint correspondence analysis.")
    (license (list license:gpl2+ license:gpl3+))))
 
+(define-public r-qvcalc
+  (package
+   (name "r-qvcalc")
+   (version "1.0.2")
+   (source
+    (origin
+     (method url-fetch)
+     (uri (cran-uri "qvcalc" version))
+     (sha256
+      (base32
+       "0banzv78kb53ybfbh1hmgx7kxvpbbdxzg4dsn7vrwhmxs72srkch"))))
+   (properties `((upstream-name . "qvcalc")))
+   (build-system r-build-system)
+   (home-page "https://davidfirth.github.io/qvcalc")
+   (synopsis
+    "Quasi Variances for Factor Effects in Statistical Models")
+   (description
+    "This package provides functions to compute quasi variances and associated measures of approximation error.")
+   (license (list license:gpl2+ license:gpl3+))))
+
+
 (define r-gpg
   (package
    (name "r-gpg")
-- 
2.36.0

Message #23 received at submit <at> debbugs.gnu.org (full text, mbox):

From: kyle <kyle <at> posteo.net>
To: guix-patches <at> gnu.org
Cc: Kyle Andrews <kyle <at> posteo.net>
Subject: [PATCH 09/14] gnu: Add r-gnm.
Date: Thu, 12 May 2022 02:10:29 +0000

From: Kyle Andrews <kyle <at> posteo.net>

---
 gnu/packages/cran.scm | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b86ab6127d..0114be8b0f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33405,6 +33405,27 @@ (define-public r-ca
     "Computation and visualization of simple, multiple and joint correspondence analysis.")
    (license (list license:gpl2+ license:gpl3+))))
 
+(define-public r-gnm
+  (package
+   (name "r-gnm")
+   (version "1.1-1")
+   (source
+    (origin
+     (method url-fetch)
+     (uri (cran-uri "gnm" version))
+     (sha256
+      (base32
+       "1lddsdsg43wpg681s906i4xqqfbjdd1qb9ml5dfprb02i1806aa2"))))
+   (properties `((upstream-name . "gnm")))
+   (build-system r-build-system)
+   (propagated-inputs
+    (list r-mass r-matrix r-nnet r-qvcalc r-relimp))
+   (home-page "https://github.com/hturner/gnm")
+   (synopsis "Generalized Nonlinear Models")
+   (description
+    "This package provides functions to specify and fit generalized nonlinear models, including models with multiplicative interaction terms such as the UNIDIFF model from sociology and the AMMI model from crop science, and many others.  Over-parameterized representations of models are used throughout; functions are provided for inference on estimable parameter combinations, as well as standard methods for diagnostics etc.")
+   (license (list license:gpl2+ license:gpl3+))))
+
 (define-public r-qvcalc
   (package
    (name "r-qvcalc")
-- 
2.36.0

Message #26 received at submit <at> debbugs.gnu.org (full text, mbox):

From: kyle <kyle <at> posteo.net>
To: guix-patches <at> gnu.org
Cc: Kyle Andrews <kyle <at> posteo.net>
Subject: [PATCH 11/14] gnu: Add r-picosat.
Date: Thu, 12 May 2022 02:10:31 +0000

From: Kyle Andrews <kyle <at> posteo.net>

---
 gnu/packages/cran.scm | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index f578cdfa2a..0c7a3d55ff 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33466,6 +33466,27 @@ (define-public r-relimp
     "This package provides functions to facilitate inference on the relative importance of predictors in a linear or generalized linear model, and a couple of useful Tcl/Tk widgets.")
    (license license:gpl2+)))
 
+(define-public r-rpicosat
+  (package
+   (name "r-rpicosat")
+   (version "1.0.1")
+   (source
+    (origin
+     (method url-fetch)
+     (uri (cran-uri "rpicosat" version))
+     (sha256
+      (base32
+       "1zj2d6jairmvya91vhv9kpkf34zmzl9vlha5yvfjj0j0apmqc0li"))))
+   (properties `((upstream-name . "rpicosat")))
+   (build-system r-build-system)
+   (home-page
+    "https://github.com/dirkschumacher/rpicosat")
+   (synopsis
+    "R Bindings for the 'PicoSAT' SAT Solver")
+   (description
+    "Bindings for the 'PicoSAT' solver to solve Boolean satisfiability problems (SAT).  The boolean satisfiability problem asks the question if a given boolean formula can be TRUE; i.e.  does there exist an assignment of TRUE/FALSE for each variable such that the whole formula is TRUE? The package bundles 'PicoSAT' solver release 965 <http://www.fmv.jku.at/picosat/>.")
+   (license license:expat)))
+
 
 (define r-gpg
   (package
-- 
2.36.0

Message #29 received at submit <at> debbugs.gnu.org (full text, mbox):

From: kyle <kyle <at> posteo.net>
To: guix-patches <at> gnu.org
Cc: Kyle Andrews <kyle <at> posteo.net>
Subject: [PATCH 12/14] gnu: Add r-ryacas.
Date: Thu, 12 May 2022 02:10:32 +0000

From: Kyle Andrews <kyle <at> posteo.net>

---
 gnu/packages/cran.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 0c7a3d55ff..a2a29f8cdb 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33487,6 +33487,28 @@ (define-public r-rpicosat
     "Bindings for the 'PicoSAT' solver to solve Boolean satisfiability problems (SAT).  The boolean satisfiability problem asks the question if a given boolean formula can be TRUE; i.e.  does there exist an assignment of TRUE/FALSE for each variable such that the whole formula is TRUE? The package bundles 'PicoSAT' solver release 965 <http://www.fmv.jku.at/picosat/>.")
    (license license:expat)))
 
+(define-public r-ryacas
+  (package
+   (name "r-ryacas")
+   (version "1.1.3")
+   (source
+    (origin
+     (method url-fetch)
+     (uri (cran-uri "Ryacas" version))
+     (sha256
+      (base32
+       "12vkylq06c7kqvvf662cyzhdcnpy928xsjflf1kf0nh6y00gywf8"))))
+   (properties `((upstream-name . "Ryacas")))
+   (build-system r-build-system)
+   (propagated-inputs (list r-magrittr r-rcpp))
+   (native-inputs (list r-knitr))
+   (home-page "https://github.com/r-cas/ryacas")
+   (synopsis
+    "R Interface to the 'Yacas' Computer Algebra System")
+   (description
+    "Interface to the 'yacas' computer algebra system (<http://www.yacas.org/>).")
+   (license (list license:gpl2+ license:gpl3+))))
+
 
 (define r-gpg
   (package
-- 
2.36.0

Message #32 received at submit <at> debbugs.gnu.org (full text, mbox):

From: kyle <kyle <at> posteo.net>
To: guix-patches <at> gnu.org
Cc: Kyle Andrews <kyle <at> posteo.net>
Subject: [PATCH 13/14] gnu: Add r-showimage.
Date: Thu, 12 May 2022 02:10:33 +0000

From: Kyle Andrews <kyle <at> posteo.net>

---
 gnu/packages/cran.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index a2a29f8cdb..30ca01c0a0 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33509,6 +33509,28 @@ (define-public r-ryacas
     "Interface to the 'yacas' computer algebra system (<http://www.yacas.org/>).")
    (license (list license:gpl2+ license:gpl3+))))
 
+(define-public r-showimage
+  (package
+   (name "r-showimage")
+   (version "1.0.0")
+   (source
+    (origin
+     (method url-fetch)
+     (uri (cran-uri "showimage" version))
+     (sha256
+      (base32
+       "1c0x3iqjdjsz3cdhc02b3qm2pwxjr1q2k87jwvxj9lnzzw81f1pl"))))
+   (properties `((upstream-name . "showimage")))
+   (build-system r-build-system)
+   (propagated-inputs (list r-png))
+   (home-page
+    "https://github.com/r-lib/showimage#readme")
+   (synopsis
+    "Show an Image on an 'R' Graphics Device")
+   (description
+    "Sometimes it is handy to be able to view an image file on an 'R' graphics device.  This package just does that.  Currently it supports 'PNG' files.")
+   (license (list license:gpl2 license:gpl3))))
+
 
 (define r-gpg
   (package
-- 
2.36.0

Message #35 received at submit <at> debbugs.gnu.org (full text, mbox):

From: kyle <kyle <at> posteo.net>
To: guix-patches <at> gnu.org
Cc: Kyle Andrews <kyle <at> posteo.net>
Subject: [PATCH 10/14] gnu: Add r-relimp.
Date: Thu, 12 May 2022 02:10:30 +0000

From: Kyle Andrews <kyle <at> posteo.net>

---
 gnu/packages/cran.scm | 20 ++++++++++++++++++++
 1 file changed, 20 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 0114be8b0f..f578cdfa2a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33446,6 +33446,26 @@ (define-public r-qvcalc
     "This package provides functions to compute quasi variances and associated measures of approximation error.")
    (license (list license:gpl2+ license:gpl3+))))
 
+(define-public r-relimp
+  (package
+   (name "r-relimp")
+   (version "1.0-5")
+   (source
+    (origin
+     (method url-fetch)
+     (uri (cran-uri "relimp" version))
+     (sha256
+      (base32
+       "0ydn82g8xdqzhf34187080bbpcpw1zdjbj2i3dv1d6d35vvprb5c"))))
+   (properties `((upstream-name . "relimp")))
+   (build-system r-build-system)
+   (home-page "http://warwick.ac.uk/relimp")
+   (synopsis
+    "Relative Contribution of Effects in a Regression Model")
+   (description
+    "This package provides functions to facilitate inference on the relative importance of predictors in a linear or generalized linear model, and a couple of useful Tcl/Tk widgets.")
+   (license license:gpl2+)))
+
 
 (define r-gpg
   (package
-- 
2.36.0

Message #38 received at submit <at> debbugs.gnu.org (full text, mbox):

From: kyle <kyle <at> posteo.net>
To: guix-patches <at> gnu.org
Cc: Kyle Andrews <kyle <at> posteo.net>
Subject: [PATCH 14/14] gnu: Add r-genoud.
Date: Thu, 12 May 2022 02:10:34 +0000

From: Kyle Andrews <kyle <at> posteo.net>

---
 gnu/packages/cran.scm | 20 ++++++++++++++++++++
 1 file changed, 20 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 30ca01c0a0..2bd741d254 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33531,6 +33531,26 @@ (define-public r-showimage
     "Sometimes it is handy to be able to view an image file on an 'R' graphics device.  This package just does that.  Currently it supports 'PNG' files.")
    (license (list license:gpl2 license:gpl3))))
 
+(define-public r-rgenoud
+  (package
+   (name "r-rgenoud")
+   (version "5.8-3.0")
+   (source
+    (origin
+     (method url-fetch)
+     (uri (cran-uri "rgenoud" version))
+     (sha256
+      (base32
+       "0p93wf6ghgz2nifxbscb6bhahh5jd2ba7nh1c2mb6fmbxnsi3swv"))))
+   (properties `((upstream-name . "rgenoud")))
+   (build-system r-build-system)
+   (home-page "http://sekhon.berkeley.edu/rgenoud/")
+   (synopsis
+    "R Version of GENetic Optimization Using Derivatives")
+   (description
+    "This package provides a genetic algorithm plus derivative optimizer.")
+   (license license:gpl3)))
+
 
 (define r-gpg
   (package
-- 
2.36.0

Message #41 received at 55379 <at> debbugs.gnu.org (full text, mbox):

From: Maxime Devos <maximedevos <at> telenet.be>
To: kyle <kyle <at> posteo.net>, 55379 <at> debbugs.gnu.org
Subject: Re: [bug#55379] [PATCH 01/14] gnu: Add r-gpg.
Date: Fri, 13 May 2022 09:10:48 +0200

[Message part 1 (text/plain, inline)]

kyle schreef op do 12-05-2022 om 02:10 [+0000]:
> +   (propagated-inputs
> +    `(("r-askpass" ,r-askpass) ("r-curl" ,r-curl)))

Can probably be simplified to (propagated-inputs (list r-askpass)).

> +   (inputs
> +    `(("gpgme" ,gpgme) ("gnupg" ,gnupg)))

Likewise.

> +   (native-inputs
> +    `(("pkg-config" ,pkg-config) ("r-knitr" ,r-knitr)))


Likewise.


> +   (home-page
> +    "https://jeroen.cran.dev/gpg/https://github.com/jeroen/gpg")

Either https://jeroen.cran.dev/gpg/ or <https://github.com/jeroen/gpg>,
the combination gives a 404 Not Found.

> Note that some functionality depends on the version of GnuPG that is
> installed on the system.

Maybe make sure that it only invokes the "gnupg" by absolute file name
such that this isn't the case.

> On Windows this package can be used together with 'GPG4Win' which
> provides a GUI for managing keys and entering passphrases.

While theoretically Guix supports cross-compilation to Windows, I don't
see GPG4Win in the package inputs and I'd expect cross-compiling r-gpg
to Windows to fail, so I would remove this paragraph since currently
it's a bit misleading.

Greetings,
Maxime.

[signature.asc (application/pgp-signature, inline)]

Message #44 received at 55379 <at> debbugs.gnu.org (full text, mbox):

From: Maxime Devos <maximedevos <at> telenet.be>
To: kyle <kyle <at> posteo.net>, 55379 <at> debbugs.gnu.org
Subject: Re: [bug#55379] [PATCH 04/14] gnu: Add r-unpivotr.
Date: Sat, 14 May 2022 12:53:28 +0200

[Message part 1 (text/plain, inline)]

kyle schreef op do 12-05-2022 om 02:10 [+0000]:
> +   (license license:expat)))


The license text appears to be missing, even though the Expat license
says:

  [...] subject to the following conditions:

  The above copyright notice and this permission notice shall be
  included in all copies or substantial portions of the Software.

So as-is, I don't think we can include r-unpivotr in Guix.  Would
probably be easily resolved with a PR or issue at
<https://github.com/nacnudus/unpivotr>.

Greetings,
Maxime.

[signature.asc (application/pgp-signature, inline)]

Message #47 received at 55379 <at> debbugs.gnu.org (full text, mbox):

From: Maxime Devos <maximedevos <at> telenet.be>
To: Kyle Andrews <kyle <at> posteo.net>
Cc: 55379 <at> debbugs.gnu.org
Subject: Re: [bug#55379] [PATCH 01/14] gnu: Add r-gpg.
Date: Sat, 14 May 2022 18:02:11 +0000

[Message part 1 (text/plain, inline)]

Kyle Andrews schreef op za 14-05-2022 om 16:53 [+0000]:
> > [[PGP Signed Part:Undecided]]
> > kyle schreef op do 12-05-2022 om 02:10 [+0000]:
> > > +   (propagated-inputs
> > > +    `(("r-askpass" ,r-askpass) ("r-curl" ,r-curl)))
> > 
> > Can probably be simplified to (propagated-inputs (list r-askpass)).
> > 
> 
> According to the ~DESCRIPTION~ file the package will not build
> without
> both askpass and curl R packages. So, I will leave those in.

Oops I meant (propagated-inputs (list r-askpass r-curl)) here -- keep
the inputs, but remove the labels, as per
<https://guix.gnu.org/en/blog/2021/the-big-change/>.

Greetings,
Maxime.

[signature.asc (application/pgp-signature, inline)]

Message #50 received at 55379 <at> debbugs.gnu.org (full text, mbox):

From: Maxime Devos <maximedevos <at> telenet.be>
To: Kyle Andrews <kyle <at> posteo.net>
Cc: 55379 <at> debbugs.gnu.org
Subject: Re: [bug#55379] [PATCH 01/14] gnu: Add r-gpg.
Date: Sat, 14 May 2022 18:07:46 +0000

[Message part 1 (text/plain, inline)]

TBC I just looked at the package definitions a bit, it's not in-depth.

E.g., in this case:

+    "R Interface to the 'Yacas' Computer Algebra System")
+ [...]


TeXinfo markup can be used to make the 'Yacas' teletype when viewed
from <https://guix.gnu.org/en/packages/> and to make the link hyperlink
a hyperlink in "guix show" and the HTML.  And a synopsis isn't a book
title or such, it's just a phrase (though often not a complete
sentence), so no need for mid-phrase capitals.

There are also some other packages with missing license text, e.g. the
first next package I chose (rust-gnm) doesn't seem to carry a copy of
the GPL.

Greetings,
Maxime.

[signature.asc (application/pgp-signature, inline)]

Message #53 received at 55379 <at> debbugs.gnu.org (full text, mbox):

From: Kyle Andrews <kyle <at> posteo.net>
To: Maxime Devos <maximedevos <at> telenet.be>
Cc: 55379 <at> debbugs.gnu.org
Subject: Re: [bug#55379] [PATCH 01/14] gnu: Add r-gpg.
Date: Sun, 15 May 2022 16:24:42 +0000

[Message part 1 (text/plain, inline)]

Hi Maxime,

Here is the version of the GPG package which I intended to send in the
first place with the verbiage about GPG4WIN removed per your suggestion.

8<------------------------------------------------------------------------------------
(define-public r-gpg
  (package
    (name "r-gpg")
    (version "1.2.6")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "gpg" version))
       (sha256
        (base32 "17rvi3qff2kanqr3g20dzhn48bfh5sv57g0wsamndzcif7rhjhby"))))
    (properties `((upstream-name . "gpg")))
    (build-system r-build-system)
    (propagated-inputs (list r-askpass r-curl))
    (native-inputs (list pkg-config r-knitr gpgme gnupg))
    (home-page "https://github.com/jeroen/gpg")
    (synopsis "GNU Privacy Guard for R")
    (description
     "Bindings to GnuPG for working with OpenGPG (RFC4880) cryptographic methods.
Includes utilities for public key encryption, creating and verifying digital
signatures, and managing your local keyring.  Some functionality depends on the
version of GnuPG that is installed on the system.")
    (license license:expat)))
------------------------------------------------------------------------------------>8

I have also attached a new patch.

Kyle

[0001-gnu-Add-r-gpg.patch (text/x-patch, attachment)]

[Message part 3 (text/plain, inline)]

Maxime Devos <maximedevos <at> telenet.be> writes:

> [[PGP Signed Part:Undecided]]
> Kyle Andrews schreef op za 14-05-2022 om 16:53 [+0000]:
>> > [[PGP Signed Part:Undecided]]
>> > kyle schreef op do 12-05-2022 om 02:10 [+0000]:
>> > > +   (propagated-inputs
>> > > +    `(("r-askpass" ,r-askpass) ("r-curl" ,r-curl)))
>> > 
>> > Can probably be simplified to (propagated-inputs (list r-askpass)).
>> > 
>> 
>> According to the ~DESCRIPTION~ file the package will not build
>> without
>> both askpass and curl R packages. So, I will leave those in.
>
> Oops I meant (propagated-inputs (list r-askpass r-curl)) here -- keep
> the inputs, but remove the labels, as per
> <https://guix.gnu.org/en/blog/2021/the-big-change/>.
>
> Greetings,
> Maxime.
>
> [[End of PGP Signed Part]]

Message #56 received at 55379 <at> debbugs.gnu.org (full text, mbox):

From: Kyle Andrews <kyle <at> posteo.net>
To: Maxime Devos <maximedevos <at> telenet.be>
Cc: 55379 <at> debbugs.gnu.org
Subject: Re: [bug#55379] [PATCH 04/14] gnu: Add r-unpivotr.
Date: Wed, 18 May 2022 01:09:07 +0000

Maxime Devos <maximedevos <at> telenet.be> writes:

> [[PGP Signed Part:Undecided]]
> kyle schreef op do 12-05-2022 om 02:10 [+0000]:
>> +   (license license:expat)))
>
>
> The license text appears to be missing, even though the Expat license
> says:
>
>   [...] subject to the following conditions:
>
>   The above copyright notice and this permission notice shall be
>   included in all copies or substantial portions of the Software.
>
> So as-is, I don't think we can include r-unpivotr in Guix.  Would
> probably be easily resolved with a PR or issue at
> <https://github.com/nacnudus/unpivotr>.
>
> Greetings,
> Maxime.
>
> [[End of PGP Signed Part]]

I did just that and the package author merged my pull request with the
MIT license text.

Cheers,
Kyle

Message #59 received at 55379 <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 55379 <at> debbugs.gnu.org
Subject: [PATCH 01/14] gnu: Add r-gpg.
Date: Sun, 18 Dec 2022 09:58:47 +0100

Hi Kyle,

I’ve been trying to apply these patches but haven’t been successful.
Have they been generated with “git format-patch”?  It looks like they
haven’t.  You can generate a patch series for the last 14 commits with
“git format-patch -14”, for example.  To send an updated patch set you
can use “--reroll-count” (or “-v”), e.g. “--reroll-count 2”.  This
generates emails with “[PATCH v2 …]” subjects, so we can automatically
extract all patches belonging to this new patch set.

I would be very happy if you could refresh this patch set on top of the
current “master” branch.

Please add each package definition to the file in alphabetic order.  It
simplifies future maintenance.

I see that the descriptions contain straight single quotes for procedure
names and package names.  We prefer to use texinfo syntax for procedures
instead, e.g. “@code{glm()}” instead of “'glm()'”.  There are also some
packages that have only sentence fragments for descriptions (e.g. r-ca).
Could you please turn those into complete sentences?  A common fix is to
prefix the description with “This package provides”.

Thanks!

-- 
Ricardo

Message #66 received at 55379-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 55379-done <at> debbugs.gnu.org
Subject: [PATCH 01/14] gnu: Add r-gpg.
Date: Mon, 10 Mar 2025 20:54:50 +0100

Unfortunately, this is now too old to be of further use for us. 
Closing.

-- 
Ricardo

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