GNU bug report logs -
#56033
[PATCH] gnu: Add r-amountain.
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Report forwarded
to
rekado <at> elephly.net, guix-patches <at> gnu.org
:
bug#56033
; Package
guix-patches
.
(Fri, 17 Jun 2022 09:10:02 GMT)
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Acknowledgement sent
to
Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
:
New bug report received and forwarded. Copy sent to
rekado <at> elephly.net, guix-patches <at> gnu.org
.
(Fri, 17 Jun 2022 09:10:02 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/bioconductor.scm (r-amountain): New variable.
---
gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..4fc7949c75 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1987,6 +1987,30 @@ (define-public r-agimicrorna
objects are used so that other packages could be used as well.")
(license license:gpl3)))
+(define-public r-amountain
+ (package
+ (name "r-amountain")
+ (version "1.22.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AMOUNTAIN" version))
+ (sha256
+ (base32
+ "0vdfabsrisdd7qq28f5ivd0v8zz49szqn677i5lhwnlaix220c54"))))
+ (properties `((upstream-name . "AMOUNTAIN")))
+ (build-system r-build-system)
+ (inputs (list gsl))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/AMOUNTAIN")
+ (synopsis "Modules for multilayer weighted gene co-expression networks")
+ (description
+ "This package provides a pure data-driven gene network, @dfn{WGCN}(weighted
+gene co-expression network) could be constructed only from expression profile.
+Different layers in such networks may represent different time points, multiple
+conditions or various species. @code{AMOUNTAIN} aims to search active modules
+in multi-layer WGCN using a continuous optimization approach.")
+ (license license:gpl2+)))
+
(define-public r-aneufinder
(package
(name "r-aneufinder")
base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb
--
2.36.1
Reply sent
to
Ricardo Wurmus <rekado <at> elephly.net>
:
You have taken responsibility.
(Thu, 30 Jun 2022 13:32:02 GMT)
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Notification sent
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Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
:
bug acknowledged by developer.
(Thu, 30 Jun 2022 13:32:02 GMT)
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Message #10 received at 56033-done <at> debbugs.gnu.org (full text, mbox):
Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:
> * gnu/packages/bioconductor.scm (r-amountain): New variable.
Applied. Thanks for the patch!
--
Ricardo
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
to
internal_control <at> debbugs.gnu.org
.
(Fri, 29 Jul 2022 11:24:06 GMT)
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This bug report was last modified 1 year and 265 days ago.
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