GNU bug report logs - #56035
[PATCH] gnu: Add r-anaquin.

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Package: guix-patches;

Reported by: Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>

Date: Fri, 17 Jun 2022 09:43:02 UTC

Severity: normal

Tags: patch

Done: Ricardo Wurmus <rekado <at> elephly.net>

Bug is archived. No further changes may be made.

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Report forwarded to rekado <at> elephly.net, guix-patches <at> gnu.org:
bug#56035; Package guix-patches. (Fri, 17 Jun 2022 09:43:02 GMT) Full text and rfc822 format available.

Acknowledgement sent to Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>:
New bug report received and forwarded. Copy sent to rekado <at> elephly.net, guix-patches <at> gnu.org. (Fri, 17 Jun 2022 09:43:02 GMT) Full text and rfc822 format available.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-anaquin.
Date: Fri, 17 Jun 2022 11:42:01 +0200
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..2b7f736dfa 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1987,6 +1987,36 @@ (define-public r-agimicrorna
 objects are used so that other packages could be used as well.")
     (license license:gpl3)))
 
+(define-public r-anaquin
+  (package
+    (name "r-anaquin")
+    (version "2.20.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "Anaquin" version))
+              (sha256
+               (base32
+                "1jgpnls2djl1yzvnk64qc83mljmlci7wflwkza3wr0sv6r47b0dd"))))
+    (properties `((upstream-name . "Anaquin")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-deseq2
+           r-ggplot2
+           r-knitr
+           r-locfit
+           r-plyr
+           r-qvalue
+           r-rocr))
+    (native-inputs (list r-knitr))
+    (home-page "https://www.sequinstandards.com/")
+    (synopsis "Statistical analysis of sequins")
+    (description
+     "The project is intended to support the use of @dfn{sequins}(synthetic
+sequencing spike-in controls) owned and made available by the Garvan Institute
+of Medical Research.  The goal is to provide a standard open source library for
+quantitative analysis, modelling and visualization of spike-in controls.")
+    (license license:bsd-3)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")

base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb
-- 
2.36.1





Reply sent to Ricardo Wurmus <rekado <at> elephly.net>:
You have taken responsibility. (Fri, 01 Jul 2022 08:26:01 GMT) Full text and rfc822 format available.

Notification sent to Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>:
bug acknowledged by developer. (Fri, 01 Jul 2022 08:26:02 GMT) Full text and rfc822 format available.

Message #10 received at 56035-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 56035-done <at> debbugs.gnu.org
Subject: Re: [bug#56035] [PATCH] gnu: Add r-anaquin.
Date: Fri, 01 Jul 2022 10:24:31 +0200
Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:

> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 1e87b190c2..2b7f736dfa 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -1987,6 +1987,36 @@ (define-public r-agimicrorna
>  objects are used so that other packages could be used as well.")
>      (license license:gpl3)))
>  
> +(define-public r-anaquin

Thanks.  I applied it with a commit message.

-- 
Ricardo




bug archived. Request was from Debbugs Internal Request <help-debbugs <at> gnu.org> to internal_control <at> debbugs.gnu.org. (Fri, 29 Jul 2022 11:24:06 GMT) Full text and rfc822 format available.

This bug report was last modified 1 year and 243 days ago.

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