GNU bug report logs - #56040
[PATCH] gnu: Add r-antiprofiles.

Previous Next

To add a comment to this bug, you must first unarchive it, by sending
a message to control AT debbugs.gnu.org, with unarchive 56040 in the body.
You can then email your comments to 56040 AT debbugs.gnu.org in the normal way.

Toggle the display of automated, internal messages from the tracker.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-antiprofiles.
Date: Fri, 17 Jun 2022 16:24:15 +0200

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..1eacd863de 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,32 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-antiprofiles
+  (package
+    (name "r-antiprofiles")
+    (version "1.36.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "antiProfiles" version))
+              (sha256
+               (base32
+                "1277kg5xpyb2yriyjy18p437q5lj22h4al7z7pygkzxzywxv9g40"))))
+    (properties `((upstream-name . "antiProfiles")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-locfit
+           r-matrixstats))
+    (home-page "https://github.com/HCBravoLab/antiProfiles")
+    (synopsis "Implementation of gene expression anti-profiles")
+    (description
+     "This package implements the gene expression anti-profiles method.
+Anti-profiles are a new approach for developing cancer genomic signatures that
+specifically take advantage of gene expression heterogeneity.  They explicitly
+model increased gene expression variability in cancer to define robust and
+reproducible gene expression signatures capable of accurately distinguishing
+tumor samples from healthy controls.")
+    (license license:artistic2.0)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")

base-commit: d6bd483cd53cedc8da39fcc6c419f7241080ed21
-- 
2.36.1

Message #10 received at 56040-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 56040-done <at> debbugs.gnu.org
Subject: Re: [bug#56040] [PATCH] gnu: Add r-antiprofiles.
Date: Fri, 01 Jul 2022 10:25:59 +0200

Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:

> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 1e87b190c2..1eacd863de 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -2029,6 +2029,32 @@ (define-public r-aneufinder
>  sequencing data.")
>      (license license:artistic2.0)))
>  
> +(define-public r-antiprofiles

Thanks.  I applied it with a commit message.

-- 
Ricardo

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.