GNU bug report logs - #56100
[PATCH] gnu: Add r-arrayexpress.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-arrayexpress.
Date: Mon, 20 Jun 2022 00:33:46 +0200

* gnu/packages/bioconductor.scm (r-arrayexpress): New variable.
---
 gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..af486561e0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,31 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-arrayexpress
+  (package
+    (name "r-arrayexpress")
+    (version "1.56.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "ArrayExpress" version))
+              (sha256
+               (base32
+                "0v2v7v0gim0bsg34ciplapz6mjih68yqhcgzdlhcyj2d6vrgiad5"))))
+    (properties `((upstream-name . "ArrayExpress")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biobase
+           r-limma
+           r-oligo
+           r-xml))
+    (home-page "https://bioconductor.org/packages/ArrayExpress")
+    (synopsis "Building R objects from ArrayExpress datasets")
+    (description
+     "This package offers the possibility to access the ArrayExpress repository
+at @dfn{EBI} (European Bioinformatics Institute) and build Bioconductor data
+structures: @code{ExpressionSet}, @code{AffyBatch}, @code{NChannelSet}.")
+    (license license:artistic2.0)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")

base-commit: 73761d8049f483e6685c2c736872d0366e03238a
-- 
2.36.1

Message #10 received at 56100-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 56100-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-arrayexpress.
Date: Thu, 24 Nov 2022 15:00:13 +0100

Applied, thanks!

-- 
Ricardo

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