GNU bug report logs -
#56141
[PATCH] gnu: Add r-asafe.
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guix-patches <at> gnu.org
:
bug#56141
; Package
guix-patches
.
(Wed, 22 Jun 2022 13:47:02 GMT)
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Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
:
New bug report received and forwarded. Copy sent to
guix-patches <at> gnu.org
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(Wed, 22 Jun 2022 13:47:02 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/bioconductor.scm (r-asafe): New variable.
---
gnu/packages/bioconductor.scm | 22 ++++++++++++++++++++++
1 file changed, 22 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..2d199a79f2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,28 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-asafe
+ (package
+ (name "r-asafe")
+ (version "1.22.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ASAFE" version))
+ (sha256
+ (base32
+ "1l9iqw2imr6w2gwqrmg05jp6lj2xc7hbyhd144d4q8vw8z7ga4ns"))))
+ (properties `((upstream-name . "ASAFE")))
+ (build-system r-build-system)
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/ASAFE")
+ (synopsis "Ancestry Specific Allele Frequency Estimation")
+ (description
+ "The @code{ASAFE} package contains a collection of functions that can be used
+to carry out an @dfn{EM} (Expectation–maximization) algorithm to estimate ancestry
+-specific allele frequencies for a bi-allelic genetic marker, e.g. an @dfn{SNP}
+(single nucleotide polymorphism) from genotypes and ancestry pairs.")
+ (license license:artistic2.0)))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
--
2.36.1
Reply sent
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Ricardo Wurmus <rekado <at> elephly.net>
:
You have taken responsibility.
(Thu, 24 Nov 2022 14:04:02 GMT)
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Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
:
bug acknowledged by developer.
(Thu, 24 Nov 2022 14:04:02 GMT)
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Message #10 received at 56141-done <at> debbugs.gnu.org (full text, mbox):
Applied, thanks!
--
Ricardo
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
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internal_control <at> debbugs.gnu.org
.
(Fri, 23 Dec 2022 12:24:11 GMT)
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This bug report was last modified 1 year and 118 days ago.
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