GNU bug report logs -
#56142
[PATCH] gnu: Add r-aseb.
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Report forwarded
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guix-patches <at> gnu.org
:
bug#56142
; Package
guix-patches
.
(Wed, 22 Jun 2022 13:59:02 GMT)
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Acknowledgement sent
to
Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
:
New bug report received and forwarded. Copy sent to
guix-patches <at> gnu.org
.
(Wed, 22 Jun 2022 13:59:02 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/bioconductor.scm (r-aseb): New variable.
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..f961d201d2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,32 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-aseb
+ (package
+ (name "r-aseb")
+ (version "1.40.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ASEB" version))
+ (sha256
+ (base32
+ "1i0r4vimk6is4j4rr14ajp8papznpmmr0bhwd96s8w53cqdqph7p"))))
+ (properties `((upstream-name . "ASEB")))
+ (build-system r-build-system)
+ (home-page "https://bioconductor.org/packages/ASEB")
+ (synopsis "Predict acetylated lysine sites")
+ (description
+ "@code{ASEB} is an R package to predict lysine sites that can be acetylated
+by a specific @dfn{KAT}-family (K-acetyl-transferases). Lysine acetylation is
+a well-studied posttranslational modification on kinds of proteins. About four
+thousand lysine acetylation sites and over 20 lysine KATs have been identified.
+However, which KAT is responsible for a given protein or lysine site acetylation
+is mostly unknown. In this package, we use a @dfn{GSEA}-like (Gene Set Enrichment
+Analysis) method to make predictions. GSEA method was developed and successfully
+used to detect coordinated expression changes and find the putative functions
+of the long non-coding RNAs.")
+ (license license:gpl3+)))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
--
2.36.1
Reply sent
to
Ricardo Wurmus <rekado <at> elephly.net>
:
You have taken responsibility.
(Mon, 31 Oct 2022 20:47:02 GMT)
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Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
:
bug acknowledged by developer.
(Mon, 31 Oct 2022 20:47:02 GMT)
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Message #10 received at 56142-done <at> debbugs.gnu.org (full text, mbox):
Applied, thanks!
--
Ricardo
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
to
internal_control <at> debbugs.gnu.org
.
(Tue, 29 Nov 2022 12:24:07 GMT)
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This bug report was last modified 1 year and 148 days ago.
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